2VFP | Genus

Total Genus 208

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	208
sequence length	556
structure length	556
Chain Sequence	DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGLIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Enterobacteria phage p22
publication title	Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein rcsb
molecule keywords	P22 TAILSPIKE PROTEIN
total genus	208
structure length	556
sequence length	556
ec nomenclature	ec 3.2.1.-:
pdb deposition date	2007-11-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09251	PhageP22-tail	Salmonella phage P22 tail-spike

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	2vfpA00

3RIQA 1TYUA 1DABA 1QA1A 2V5IA 3H09A 2VFOA 1CLWA 1TYVA 4KH3A 1WXRA 1QA2A 3ML3A 4OM9A 2IOUG 1QQ1A 1TSPA 2VFMA 2VFNA 1QRCA 2VFQA 1TYWA 3AK5A 1TYXA 3SYJA 1QA3A 1QRBA 3SZEA 2VFPA 2XC1A 3TH0A
chains in the Genus database with same CATH superfamily

2BX6A 3UW0A 1O8LA 1TYUA 3ZPPA 3PSSA 2O1DA 4OJLA 1DABA 2V5IA 1K5CA 2VFOA 2QXZA 3EQOA 3PETA 1OFMA 3GQ9A 1O8KA 1KCDA 4MR0A 3VMVA 2EWEA 4I84A 1KQ5A 1TYVA 4KH3A 4YC5A 1LM1A 2XT4A 2NSTA 2O0WA 3GQ7A 1O8GA 3ML3A 1GQ8A 3B8YA 3FY3A 3GRHA 4U49A 4Z03A 1PLUA 1L1IA 3GQAA 1OOCA 3T9GA 5DNSA 2VJJA 5AMVA 4XKWA 4XM3A 1RWRA 2VBEA 2VFQA 3AK5A 2O0VA 4YDTA 1TYXA 1O8EA 4URRA 1XG2A 3LMWA 1O88A 3SUCA 2NSPA 2UVEA 1O8MA 1JRGA 1RMGA 2W7ZA 4XLHA 2BSPA 1CZFA 4XN3A 4NK8A 4YCQA 2B0RA 1BHEA 1EA0A 2O6WA 1CLWA 2IQ7A 4EW9A 1HG8A 1OGOX 4W8SA 1AIRA 2BM7A 2F3LA 2X6YA 4XQFA 1WXRA 3BH7B 1O8FA 2BM6A 4OPWA 1QA2A 4MXNA 1O8HA 2YUHA 4OJPA 1VBLA 1OFEA 2XTXA 2IOUG 2NZMA 1JTAA 4YEIA 2BM5A 4C2LA 3PSZA 2VFNA 3B4NA 4W8RA 1QJVA 1BN8A 1NHCA 1TYWA 1KCCA 3N90A 4W8TA 3SYJA 1LLZA 1QRBA 1KTWA 2BM4A 4XR6A 2VFPA 2O04A 4YELA 3WWGA 3DU1X 3N6ZA 3JURA 2X6XA 3GQ8A 1IDKA 4U4BA 1DBOA 1DBGA 4YEJA 3RIQA 2ODLA 3VSVA 4XLAA 4OJ6A 1QA1A 3H09A 3BH6B 5C1EA 1OFDA 1PE9A 4OJOA 1RU4A 4V02C 1LLWA 2INUA 2VJIA 4YZQA 1K4ZA 4YZAA 1K8FA 2XTWA 4OM9A 2NTBA 1QQ1A 2NT6A 4Z06A 4NK6A 4YZXA 4Z05A 1O8DA 1EZGA 2UVFA 2XTYA 3B90A 3ZSCA 4XN0A 1QA3A 4XOPA 2PECA 1HF2A 3SZEA 1O8IA 2X3HA 3TH0A 3VSTA 3LYCA 4OZZA 3JX8A 4OJ5A 2NT9A 4XONA 4XMYA 2NTQA 2PYHA 2NTPA 3NAWA 1O8JA 3SQVA 4OZYA 3SY2A 4XL9A 2J8KA 1QCXA 1H80A 4HWVA 5JLVC 2QYUA 4YFOA 1EE6A 1IDJA 3VMWA 1IA5A 4W8QA 4XKVA 2QY1A 1OFLA 4XLFA 4XLEA 1X0CA 2G0YA 4XOTA 1TSPA 2VBKA 5JMCB 2VFMA 4XLCA 2X6WA 3P4GA 2QZAA 3VSUA 1QRCA 4XORA 3KRGA 4XNFA 2Z8GA 1IB4A 2INVA 3LJYA 3EQNA 1OGMX 2O17A 1PXZA 4PMHA 4YZ0A 5C1CA 2XT2A 1WMRA 2QX3A 2VBMA 2J8IA 2X85A 2XC1A 3NB2A 2PYGA 4JRAC 4AVZA
chains in the Genus database with same CATH topology

4OJ5A 2W7ZA 2BX6A 3RIQA 1TYUA 4OJ6A 2B0RA 4OJLA 1DABA 1QA1A 2V5IA 3H09A 3BH6B 2VFOA 3PETA 1CLWA 5JLVC 4OJOA 1KQ5A 1TYVA 2BM7A 2F3LA 4KH3A 1WXRA 3N6ZA 3BH7B 4V02C 2BM6A 4OPWA 1QA2A 1K4ZA 3ML3A 1K8FA 2YUHA 4OJPA 2G0YA 4OM9A 2IOUG 1QQ1A 1TSPA 5JMCB 2VFMA 2BM5A 3P4GA 2VFNA 1QRCA 1TYWA 2VFQA 3AK5A 3LJYA 3N90A 1TYXA 3SYJA 1QA3A 1QRBA 3SZEA 1HF2A 2BM4A 2VFPA 2XC1A 4JRAC 3TH0A 2J8IA 3LYCA 3JX8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3RIQ A;  1TYU A;  1DAB A;  1QA1 A;  2V5I A;  3H09 A;  2VFO A;  1CLW A;  1TYV A;  4KH3 A;  1WXR A;  1QA2 A;  3ML3 A;  4OM9 A;  2IOU G;  1QQ1 A;  1TSP A;  2VFM A;  2VFN A;  1QRC A;  2VFQ A;  1TYW A;  3AK5 A;  1TYX A;  3SYJ A;  1QA3 A;  1QRB A;  3SZE A;  2VFP A;  2XC1 A;  3TH0 A; 
#chains in the Genus database with same CATH topology
 2BX6 A;  3UW0 A;  1O8L A;  1TYU A;  3ZPP A;  3PSS A;  2O1D A;  4OJL A;  1DAB A;  2V5I A;  1K5C A;  2VFO A;  2QXZ A;  3EQO A;  3PET A;  1OFM A;  3GQ9 A;  1O8K A;  1KCD A;  4MR0 A;  3VMV A;  2EWE A;  4I84 A;  1KQ5 A;  1TYV A;  4KH3 A;  4YC5 A;  1LM1 A;  2XT4 A;  2NST A;  2O0W A;  3GQ7 A;  1O8G A;  3ML3 A;  1GQ8 A;  3B8Y A;  3FY3 A;  3GRH A;  4U49 A;  4Z03 A;  1PLU A;  1L1I A;  3GQA A;  1OOC A;  3T9G A;  5DNS A;  2VJJ A;  5AMV A;  4XKW A;  4XM3 A;  1RWR A;  2VBE A;  2VFQ A;  3AK5 A;  2O0V A;  4YDT A;  1TYX A;  1O8E A;  4URR A;  1XG2 A;  3LMW A;  1O88 A;  3SUC A;  2NSP A;  2UVE A;  1O8M A;  1JRG A;  1RMG A;  2W7Z A;  4XLH A;  2BSP A;  1CZF A;  4XN3 A;  4NK8 A;  4YCQ A;  2B0R A;  1BHE A;  1EA0 A;  2O6W A;  1CLW A;  2IQ7 A;  4EW9 A;  1HG8 A;  1OGO X;  4W8S A;  1AIR A;  2BM7 A;  2F3L A;  2X6Y A;  4XQF A;  1WXR A;  3BH7 B;  1O8F A;  2BM6 A;  4OPW A;  1QA2 A;  4MXN A;  1O8H A;  2YUH A;  4OJP A;  1VBL A;  1OFE A;  2XTX A;  2IOU G;  2NZM A;  1JTA A;  4YEI A;  2BM5 A;  4C2L A;  3PSZ A;  2VFN A;  3B4N A;  4W8R A;  1QJV A;  1BN8 A;  1NHC A;  1TYW A;  1KCC A;  3N90 A;  4W8T A;  3SYJ A;  1LLZ A;  1QRB A;  1KTW A;  2BM4 A;  4XR6 A;  2VFP A;  2O04 A;  4YEL A;  3WWG A;  3DU1 X;  3N6Z A;  3JUR A;  2X6X A;  3GQ8 A;  1IDK A;  4U4B A;  1DBO A;  1DBG A;  4YEJ A;  3RIQ A;  2ODL A;  3VSV A;  4XLA A;  4OJ6 A;  1QA1 A;  3H09 A;  3BH6 B;  5C1E A;  1OFD A;  1PE9 A;  4OJO A;  1RU4 A;  4V02 C;  1LLW A;  2INU A;  2VJI A;  4YZQ A;  1K4Z A;  4YZA A;  1K8F A;  2XTW A;  4OM9 A;  2NTB A;  1QQ1 A;  2NT6 A;  4Z06 A;  4NK6 A;  4YZX A;  4Z05 A;  1O8D A;  1EZG A;  2UVF A;  2XTY A;  3B90 A;  3ZSC A;  4XN0 A;  1QA3 A;  4XOP A;  2PEC A;  1HF2 A;  3SZE A;  1O8I A;  2X3H A;  3TH0 A;  3VST A;  3LYC A;  4OZZ A;  3JX8 A;  4OJ5 A;  2NT9 A;  4XON A;  4XMY A;  2NTQ A;  2PYH A;  2NTP A;  3NAW A;  1O8J A;  3SQV A;  4OZY A;  3SY2 A;  4XL9 A;  2J8K A;  1QCX A;  1H80 A;  4HWV A;  5JLV C;  2QYU A;  4YFO A;  1EE6 A;  1IDJ A;  3VMW A;  1IA5 A;  4W8Q A;  4XKV A;  2QY1 A;  1OFL A;  4XLF A;  4XLE A;  1X0C A;  2G0Y A;  4XOT A;  1TSP A;  2VBK A;  5JMC B;  2VFM A;  4XLC A;  2X6W A;  3P4G A;  2QZA A;  3VSU A;  1QRC A;  4XOR A;  3KRG A;  4XNF A;  2Z8G A;  1IB4 A;  2INV A;  3LJY A;  3EQN A;  1OGM X;  2O17 A;  1PXZ A;  4PMH A;  4YZ0 A;  5C1C A;  2XT2 A;  1WMR A;  2QX3 A;  2VBM A;  2J8I A;  2X85 A;  2XC1 A;  3NB2 A;  2PYG A;  4JRA C;  4AVZ A; 
#chains in the Genus database with same CATH homology
 4OJ5 A;  2W7Z A;  2BX6 A;  3RIQ A;  1TYU A;  4OJ6 A;  2B0R A;  4OJL A;  1DAB A;  1QA1 A;  2V5I A;  3H09 A;  3BH6 B;  2VFO A;  3PET A;  1CLW A;  5JLV C;  4OJO A;  1KQ5 A;  1TYV A;  2BM7 A;  2F3L A;  4KH3 A;  1WXR A;  3N6Z A;  3BH7 B;  4V02 C;  2BM6 A;  4OPW A;  1QA2 A;  1K4Z A;  3ML3 A;  1K8F A;  2YUH A;  4OJP A;  2G0Y A;  4OM9 A;  2IOU G;  1QQ1 A;  1TSP A;  5JMC B;  2VFM A;  2BM5 A;  3P4G A;  2VFN A;  1QRC A;  1TYW A;  2VFQ A;  3AK5 A;  3LJY A;  3N90 A;  1TYX A;  3SYJ A;  1QA3 A;  1QRB A;  3SZE A;  1HF2 A;  2BM4 A;  2VFP A;  2XC1 A;  4JRA C;  3TH0 A;  2J8I A;  3LYC A;  3JX8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2VFPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations