2VFQ | Genus

Total Genus 202

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	202
sequence length	556
structure length	556
Chain Sequence	DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYASNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Enterobacteria phage p22
publication title	Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein rcsb
molecule keywords	P22 TAILSPIKE PROTEIN,
total genus	202
structure length	556
sequence length	556
ec nomenclature	ec 3.2.1.-:
pdb deposition date	2007-11-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09251	PhageP22-tail	Salmonella phage P22 tail-spike

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	2vfqA00

1QQ1A 1TYVA 2VFMA 3SYJA 3AK5A 3ML3A 1CLWA 1QA2A 2VFNA 4KH3A 4OM9A 1DABA 1WXRA 1QRBA 3SZEA 3H09A 2V5IA 2VFQA 1TYWA 1TYXA 2XC1A 1TSPA 2VFPA 1QA1A 2VFOA 3RIQA 3TH0A 1QRCA 1TYUA 1QA3A 2IOUG
chains in the Genus database with same CATH superfamily

3SUCA 3SYJA 1O88A 4YC5A 1CLWA 3EQNA 4XLFA 1VBLA 4MR0A 4XKVA 1IA5A 1OOCA 4OJPA 1HF2A 1JRGA 4YEIA 1OFLA 2INUA 3B4NA 4HWVA 2VFQA 4OJ6A 2X3HA 4YDTA 3SZEA 4OPWA 3GQ7A 2XC1A 4XL9A 5DNSA 4YELA 5JMCB 3BH7B 3LMWA 4C2LA 3FY3A 3P4GA 1QA1A 1O8FA 1O8EA 4XLCA 4YFOA 3VSVA 4NK6A 1OFEA 3JURA 4Z03A 2XT2A 1BHEA 4XQFA 3LJYA 1KCDA 1O8DA 4Z06A 1DBOA 5C1EA 4XOPA 4OZYA 2QX3A 1K5CA 1H80A 3N90A 1BN8A 4XMYA 4YCQA 1DBGA 3ML3A 1RWRA 2QYUA 1OFMA 3EQOA 1QA2A 3VMWA 3ZSCA 2VFNA 3VMVA 1WXRA 2QXZA 1GQ8A 4W8RA 3H09A 4PMHA 1LLZA 2YUHA 1K8FA 1TYWA 3PSSA 1O8HA 2BM4A 1PLUA 1TSPA 2Z8GA 4XONA 1KTWA 3N6ZA 2VFOA 1KQ5A 1LLWA 2W7ZA 2PYGA 2XTWA 3KRGA 4W8QA 2QY1A 3TH0A 1QRCA 1TYUA 3SY2A 3VSUA 2XT4A 1XG2A 2O17A 2X6YA 3GQ9A 2VBMA 4XNFA 4YZQA 4URRA 2PECA 1OGOX 2VJIA 2BM6A 3WWGA 2XTXA 1AIRA 1PE9A 2IOUG 2NT9A 1TYVA 2G0YA 2VBKA 3GQ8A 4XOTA 1X0CA 2BM7A 4JRAC 1K4ZA 2X6XA 4XLAA 1RMGA 1OFDA 3AK5A 4YZ0A 4V02C 3LYCA 2NTBA 2O6WA 1QCXA 4YZXA 4OM9A 1DABA 1IDJA 1EZGA 2VJJA 2O0VA 2V5IA 3DU1X 1TYXA 2UVEA 2BM5A 1EE6A 4U4BA 3UW0A 2O04A 4U49A 2O1DA 5AMVA 4OJLA 3B90A 3SQVA 4MXNA 1O8LA 2B0RA 5JLVC 4XR6A 1IDKA 2IQ7A 3PSZA 1O8KA 4OJ5A 2J8KA 4NK8A 4OZZA 1EA0A 1NHCA 1HG8A 4YEJA 4EW9A 2BX6A 2F3LA 2PYHA 4W8SA 2UVFA 2NT6A 2J8IA 1KCCA 4XORA 4XM3A 1QQ1A 1RU4A 3NAWA 2VFMA 4XKWA 2X85A 2BSPA 4I84A 1OGMX 4W8TA 2NTPA 1IB4A 2NTQA 3PETA 2VBEA 4Z05A 1CZFA 3GQAA 4OJOA 4KH3A 1QJVA 1L1IA 1WMRA 1PXZA 1O8MA 1QRBA 3JX8A 4XN0A 4AVZA 2EWEA 2ODLA 1O8JA 2NZMA 5C1CA 2VFPA 3GRHA 1O8IA 3RIQA 1LM1A 2X6WA 3ZPPA 4YZAA 2QZAA 4XLHA 4XLEA 3BH6B 2NSPA 1O8GA 3T9GA 4XN3A 1JTAA 2INVA 2O0WA 2NSTA 3NB2A 2XTYA 3B8YA 1QA3A 3VSTA
chains in the Genus database with same CATH topology

1QQ1A 1TYVA 2G0YA 2VFMA 3N90A 2BM7A 4JRAC 3SYJA 1K4ZA 3ML3A 3AK5A 1CLWA 3PETA 4V02C 3LYCA 4OJOA 1QA2A 4OJPA 2VFNA 4KH3A 4OM9A 1DABA 1HF2A 1WXRA 1QRBA 4OJ6A 3H09A 2V5IA 2VFQA 2YUHA 3JX8A 1K8FA 3SZEA 1TYWA 1TYXA 4OPWA 2XC1A 2BM5A 2BM4A 5JMCB 1TSPA 3BH7B 2VFPA 4OJLA 3P4GA 1QA1A 3N6ZA 2VFOA 3RIQA 2B0RA 1KQ5A 2W7ZA 3TH0A 5JLVC 4OJ5A 1QRCA 1TYUA 3BH6B 1QA3A 2BX6A 2F3LA 3LJYA 2BM6A 2J8IA 2IOUG
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1QQ1 A;  1TYV A;  2VFM A;  3SYJ A;  3AK5 A;  3ML3 A;  1CLW A;  1QA2 A;  2VFN A;  4KH3 A;  4OM9 A;  1DAB A;  1WXR A;  1QRB A;  3SZE A;  3H09 A;  2V5I A;  2VFQ A;  1TYW A;  1TYX A;  2XC1 A;  1TSP A;  2VFP A;  1QA1 A;  2VFO A;  3RIQ A;  3TH0 A;  1QRC A;  1TYU A;  1QA3 A;  2IOU G; 
#chains in the Genus database with same CATH topology
 3SUC A;  3SYJ A;  1O88 A;  4YC5 A;  1CLW A;  3EQN A;  4XLF A;  1VBL A;  4MR0 A;  4XKV A;  1IA5 A;  1OOC A;  4OJP A;  1HF2 A;  1JRG A;  4YEI A;  1OFL A;  2INU A;  3B4N A;  4HWV A;  2VFQ A;  4OJ6 A;  2X3H A;  4YDT A;  3SZE A;  4OPW A;  3GQ7 A;  2XC1 A;  4XL9 A;  5DNS A;  4YEL A;  5JMC B;  3BH7 B;  3LMW A;  4C2L A;  3FY3 A;  3P4G A;  1QA1 A;  1O8F A;  1O8E A;  4XLC A;  4YFO A;  3VSV A;  4NK6 A;  1OFE A;  3JUR A;  4Z03 A;  2XT2 A;  1BHE A;  4XQF A;  3LJY A;  1KCD A;  1O8D A;  4Z06 A;  1DBO A;  5C1E A;  4XOP A;  4OZY A;  2QX3 A;  1K5C A;  1H80 A;  3N90 A;  1BN8 A;  4XMY A;  4YCQ A;  1DBG A;  3ML3 A;  1RWR A;  2QYU A;  1OFM A;  3EQO A;  1QA2 A;  3VMW A;  3ZSC A;  2VFN A;  3VMV A;  1WXR A;  2QXZ A;  1GQ8 A;  4W8R A;  3H09 A;  4PMH A;  1LLZ A;  2YUH A;  1K8F A;  1TYW A;  3PSS A;  1O8H A;  2BM4 A;  1PLU A;  1TSP A;  2Z8G A;  4XON A;  1KTW A;  3N6Z A;  2VFO A;  1KQ5 A;  1LLW A;  2W7Z A;  2PYG A;  2XTW A;  3KRG A;  4W8Q A;  2QY1 A;  3TH0 A;  1QRC A;  1TYU A;  3SY2 A;  3VSU A;  2XT4 A;  1XG2 A;  2O17 A;  2X6Y A;  3GQ9 A;  2VBM A;  4XNF A;  4YZQ A;  4URR A;  2PEC A;  1OGO X;  2VJI A;  2BM6 A;  3WWG A;  2XTX A;  1AIR A;  1PE9 A;  2IOU G;  2NT9 A;  1TYV A;  2G0Y A;  2VBK A;  3GQ8 A;  4XOT A;  1X0C A;  2BM7 A;  4JRA C;  1K4Z A;  2X6X A;  4XLA A;  1RMG A;  1OFD A;  3AK5 A;  4YZ0 A;  4V02 C;  3LYC A;  2NTB A;  2O6W A;  1QCX A;  4YZX A;  4OM9 A;  1DAB A;  1IDJ A;  1EZG A;  2VJJ A;  2O0V A;  2V5I A;  3DU1 X;  1TYX A;  2UVE A;  2BM5 A;  1EE6 A;  4U4B A;  3UW0 A;  2O04 A;  4U49 A;  2O1D A;  5AMV A;  4OJL A;  3B90 A;  3SQV A;  4MXN A;  1O8L A;  2B0R A;  5JLV C;  4XR6 A;  1IDK A;  2IQ7 A;  3PSZ A;  1O8K A;  4OJ5 A;  2J8K A;  4NK8 A;  4OZZ A;  1EA0 A;  1NHC A;  1HG8 A;  4YEJ A;  4EW9 A;  2BX6 A;  2F3L A;  2PYH A;  4W8S A;  2UVF A;  2NT6 A;  2J8I A;  1KCC A;  4XOR A;  4XM3 A;  1QQ1 A;  1RU4 A;  3NAW A;  2VFM A;  4XKW A;  2X85 A;  2BSP A;  4I84 A;  1OGM X;  4W8T A;  2NTP A;  1IB4 A;  2NTQ A;  3PET A;  2VBE A;  4Z05 A;  1CZF A;  3GQA A;  4OJO A;  4KH3 A;  1QJV A;  1L1I A;  1WMR A;  1PXZ A;  1O8M A;  1QRB A;  3JX8 A;  4XN0 A;  4AVZ A;  2EWE A;  2ODL A;  1O8J A;  2NZM A;  5C1C A;  2VFP A;  3GRH A;  1O8I A;  3RIQ A;  1LM1 A;  2X6W A;  3ZPP A;  4YZA A;  2QZA A;  4XLH A;  4XLE A;  3BH6 B;  2NSP A;  1O8G A;  3T9G A;  4XN3 A;  1JTA A;  2INV A;  2O0W A;  2NST A;  3NB2 A;  2XTY A;  3B8Y A;  1QA3 A;  3VST A; 
#chains in the Genus database with same CATH homology
 1QQ1 A;  1TYV A;  2G0Y A;  2VFM A;  3N90 A;  2BM7 A;  4JRA C;  3SYJ A;  1K4Z A;  3ML3 A;  3AK5 A;  1CLW A;  3PET A;  4V02 C;  3LYC A;  4OJO A;  1QA2 A;  4OJP A;  2VFN A;  4KH3 A;  4OM9 A;  1DAB A;  1HF2 A;  1WXR A;  1QRB A;  4OJ6 A;  3H09 A;  2V5I A;  2VFQ A;  2YUH A;  3JX8 A;  1K8F A;  3SZE A;  1TYW A;  1TYX A;  4OPW A;  2XC1 A;  2BM5 A;  2BM4 A;  5JMC B;  1TSP A;  3BH7 B;  2VFP A;  4OJL A;  3P4G A;  1QA1 A;  3N6Z A;  2VFO A;  3RIQ A;  2B0R A;  1KQ5 A;  2W7Z A;  3TH0 A;  5JLV C;  4OJ5 A;  1QRC A;  1TYU A;  3BH6 B;  1QA3 A;  2BX6 A;  2F3L A;  3LJY A;  2BM6 A;  2J8I A;  2IOU G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2VFQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations