2XT4 | Genus

Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	76
sequence length	185
structure length	185
Chain Sequence	KDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQAGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSLDIELS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfdf7da8cd2652c390cc589/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5cfdf7da8cd2652c390cc589/pdb.gz): 1543 ms

reading 185 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

185 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

Adding embedded #jmolscript: select ({0:184});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Xanthomonas albilineans
publication title	Pentapeptide-Repeat Proteins that Act as Topoisomerase Poison Resistance Factors Have a Common Dimer Interface. pubmed doi rcsb
molecule keywords	MCBG-LIKE PROTEIN
total genus	76
structure length	185
sequence length	185
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-10-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13599	Pentapeptide_4	Pentapeptide repeats (9 copies)
A	PF13599	Pentapeptide_4	Pentapeptide repeats (9 copies)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.80	Mainly Beta	3 Solenoid	Pectate Lyase C-like	E3 ubiquitin-protein ligase SopA	2xt4A00

2O6WA 2QZAA 2QYUA 4YC5A 3PSSA 3PSZA 2XT2A 4YDTA 2XTXA 2XTYA 2XTWA 4YCQA 3NB2A 3DU1X 5DNSA 3SY2A 3SQVA 3NAWA 2XT4A 2J8KA 4YFOA 4YEIA
chains in the Genus database with same CATH superfamily

3BH7B 1QQ1A 4XN3A 1HF2A 2EWEA 5AMVA 1K4ZA 2B0RA 2O6WA 2QYUA 5C1EA 1K5CA 4YC5A 3PSSA 3PSZA 3LYCA 3GQAA 4U4BA 4Z06A 1O8KA 2PYHA 2XTYA 3LJYA 4W8QA 1QRCA 4HWVA 4YZAA 2PYGA 1PXZA 4YZ0A 2QX3A 3SY2A 3LMWA 1TYVA 4OJOA 3FY3A 1XG2A 2VJJA 1CLWA 1QA3A 1TYUA 1QJVA 1AIRA 2ODLA 1KCCA 2NT9A 1KCDA 4XLCA 3SZEA 2YUHA 1O8HA 2W7ZA 1QA2A 4XONA 1JRGA 1BN8A 1KQ5A 4XKWA 2XT4A 2J8KA 3VMWA 4U49A 4Z05A 1IDKA 2BM7A 2VBKA 1DBOA 2X6XA 3EQOA 2O0WA 3VSTA 1L1IA 2NSPA 1O8JA 3GQ7A 3H09A 2X85A 4OJ6A 1LLWA 4XKVA 3RIQA 3GQ8A 2VFPA 1CZFA 4OZYA 1O8IA 4YDTA 2XTXA 3VMVA 1RU4A 4XORA 2XTWA 4YCQA 3NB2A 2IQ7A 2VJIA 3TH0A 2O04A 1EA0A 1LM1A 1QCXA 1IDJA 2VFMA 4W8RA 5JLVC 3SQVA 1OFLA 2Z8GA 4W8TA 4XLEA 2X6YA 1O8EA 4XLHA 1PLUA 4OM9A 1QRBA 3NAWA 2NSTA 1JTAA 2UVFA 4YZXA 3VSVA 4YELA 1OGMX 2NTPA 3AK5A 1PE9A 1EZGA 2NTQA 4EW9A 3PETA 4URRA 3KRGA 3SYJA 4YEIA 2VFQA 3BH6B 4NK6A 4NK8A 4YEJA 1RMGA 2G0YA 2XT2A 4OJLA 3VSUA 1DBGA 3B90A 2PECA 1IB4A 1NHCA 3EQNA 3SUCA 4OJ5A 1BHEA 2NT6A 3DU1X 2BX6A 4XL9A 4XQFA 3P4GA 5C1CA 1HG8A 1OOCA 3T9GA 1OGOX 1RWRA 2VFOA 2QXZA 4OPWA 3B4NA 4KH3A 1WXRA 1O8FA 2O1DA 1IA5A 4XM3A 4Z03A 1QA1A 3N6ZA 2O17A 4AVZA 2X6WA 2NZMA 2F3LA 1O88A 2INUA 2VBEA 4XMYA 4OZZA 2BM6A 1X0CA 2INVA 4XR6A 4OJPA 3ML3A 4W8SA 1GQ8A 2QY1A 5JMCB 2QZAA 3N90A 4XOTA 1LLZA 2X3HA 2O0VA 2VFNA 3UW0A 2VBMA 4YZQA 2V5IA 3GQ9A 5DNSA 2UVEA 1O8MA 4PMHA 1TYXA 3WWGA 1O8LA 1VBLA 1WMRA 1OFEA 4V02C 1H80A 3JX8A 1TYWA 3JURA 1EE6A 4I84A 4XLFA 1K8FA 4C2LA 2IOUG 1TSPA 4MR0A 3B8YA 4XN0A 1O8DA 4XOPA 2J8IA 3ZSCA 3ZPPA 2XC1A 1OFMA 2BSPA 4XNFA 1DABA 4JRAC 4MXNA 4XLAA 1OFDA 4YFOA 2BM5A 2NTBA 1KTWA 3GRHA 1O8GA 2BM4A
chains in the Genus database with same CATH topology

2O6WA 2QZAA 2QYUA 4YC5A 3PSSA 3PSZA 2XT2A 4YDTA 2XTXA 2XTYA 2XTWA 4YCQA 3NB2A 3DU1X 5DNSA 3SY2A 3SQVA 3NAWA 2XT4A 2J8KA 4YFOA 4YEIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2O6W A;  2QZA A;  2QYU A;  4YC5 A;  3PSS A;  3PSZ A;  2XT2 A;  4YDT A;  2XTX A;  2XTY A;  2XTW A;  4YCQ A;  3NB2 A;  3DU1 X;  5DNS A;  3SY2 A;  3SQV A;  3NAW A;  2XT4 A;  2J8K A;  4YFO A;  4YEI A; 
#chains in the Genus database with same CATH topology
 3BH7 B;  1QQ1 A;  4XN3 A;  1HF2 A;  2EWE A;  5AMV A;  1K4Z A;  2B0R A;  2O6W A;  2QYU A;  5C1E A;  1K5C A;  4YC5 A;  3PSS A;  3PSZ A;  3LYC A;  3GQA A;  4U4B A;  4Z06 A;  1O8K A;  2PYH A;  2XTY A;  3LJY A;  4W8Q A;  1QRC A;  4HWV A;  4YZA A;  2PYG A;  1PXZ A;  4YZ0 A;  2QX3 A;  3SY2 A;  3LMW A;  1TYV A;  4OJO A;  3FY3 A;  1XG2 A;  2VJJ A;  1CLW A;  1QA3 A;  1TYU A;  1QJV A;  1AIR A;  2ODL A;  1KCC A;  2NT9 A;  1KCD A;  4XLC A;  3SZE A;  2YUH A;  1O8H A;  2W7Z A;  1QA2 A;  4XON A;  1JRG A;  1BN8 A;  1KQ5 A;  4XKW A;  2XT4 A;  2J8K A;  3VMW A;  4U49 A;  4Z05 A;  1IDK A;  2BM7 A;  2VBK A;  1DBO A;  2X6X A;  3EQO A;  2O0W A;  3VST A;  1L1I A;  2NSP A;  1O8J A;  3GQ7 A;  3H09 A;  2X85 A;  4OJ6 A;  1LLW A;  4XKV A;  3RIQ A;  3GQ8 A;  2VFP A;  1CZF A;  4OZY A;  1O8I A;  4YDT A;  2XTX A;  3VMV A;  1RU4 A;  4XOR A;  2XTW A;  4YCQ A;  3NB2 A;  2IQ7 A;  2VJI A;  3TH0 A;  2O04 A;  1EA0 A;  1LM1 A;  1QCX A;  1IDJ A;  2VFM A;  4W8R A;  5JLV C;  3SQV A;  1OFL A;  2Z8G A;  4W8T A;  4XLE A;  2X6Y A;  1O8E A;  4XLH A;  1PLU A;  4OM9 A;  1QRB A;  3NAW A;  2NST A;  1JTA A;  2UVF A;  4YZX A;  3VSV A;  4YEL A;  1OGM X;  2NTP A;  3AK5 A;  1PE9 A;  1EZG A;  2NTQ A;  4EW9 A;  3PET A;  4URR A;  3KRG A;  3SYJ A;  4YEI A;  2VFQ A;  3BH6 B;  4NK6 A;  4NK8 A;  4YEJ A;  1RMG A;  2G0Y A;  2XT2 A;  4OJL A;  3VSU A;  1DBG A;  3B90 A;  2PEC A;  1IB4 A;  1NHC A;  3EQN A;  3SUC A;  4OJ5 A;  1BHE A;  2NT6 A;  3DU1 X;  2BX6 A;  4XL9 A;  4XQF A;  3P4G A;  5C1C A;  1HG8 A;  1OOC A;  3T9G A;  1OGO X;  1RWR A;  2VFO A;  2QXZ A;  4OPW A;  3B4N A;  4KH3 A;  1WXR A;  1O8F A;  2O1D A;  1IA5 A;  4XM3 A;  4Z03 A;  1QA1 A;  3N6Z A;  2O17 A;  4AVZ A;  2X6W A;  2NZM A;  2F3L A;  1O88 A;  2INU A;  2VBE A;  4XMY A;  4OZZ A;  2BM6 A;  1X0C A;  2INV A;  4XR6 A;  4OJP A;  3ML3 A;  4W8S A;  1GQ8 A;  2QY1 A;  5JMC B;  2QZA A;  3N90 A;  4XOT A;  1LLZ A;  2X3H A;  2O0V A;  2VFN A;  3UW0 A;  2VBM A;  4YZQ A;  2V5I A;  3GQ9 A;  5DNS A;  2UVE A;  1O8M A;  4PMH A;  1TYX A;  3WWG A;  1O8L A;  1VBL A;  1WMR A;  1OFE A;  4V02 C;  1H80 A;  3JX8 A;  1TYW A;  3JUR A;  1EE6 A;  4I84 A;  4XLF A;  1K8F A;  4C2L A;  2IOU G;  1TSP A;  4MR0 A;  3B8Y A;  4XN0 A;  1O8D A;  4XOP A;  2J8I A;  3ZSC A;  3ZPP A;  2XC1 A;  1OFM A;  2BSP A;  4XNF A;  1DAB A;  4JRA C;  4MXN A;  4XLA A;  1OFD A;  4YFO A;  2BM5 A;  2NTB A;  1KTW A;  3GRH A;  1O8G A;  2BM4 A; 
#chains in the Genus database with same CATH homology
 2O6W A;  2QZA A;  2QYU A;  4YC5 A;  3PSS A;  3PSZ A;  2XT2 A;  4YDT A;  2XTX A;  2XTY A;  2XTW A;  4YCQ A;  3NB2 A;  3DU1 X;  5DNS A;  3SY2 A;  3SQV A;  3NAW A;  2XT4 A;  2J8K A;  4YFO A;  4YEI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XT4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations