2XTX | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	216
structure length	207
Chain Sequence	GSHMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFRCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGIAVI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Klebsiella pneumoniae
publication title	Structure of Qnrb1, a Plasmid-Mediated Fluoroquinolone Resistance Factor. pubmed doi rcsb
molecule keywords	QNRB1
total genus	83
structure length	207
sequence length	216
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-10-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13599	Pentapeptide_4	Pentapeptide repeats (9 copies)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.80	Mainly Beta	3 Solenoid	Pectate Lyase C-like	E3 ubiquitin-protein ligase SopA	2xtxA00

3DU1X 3SQVA 4YCQA 2XTXA 4YDTA 2J8KA 5DNSA 3NAWA 4YC5A 3NB2A 3PSSA 2XTWA 4YFOA 3PSZA 2XT4A 4YEIA 2QZAA 2XT2A 2QYUA 2XTYA 3SY2A 2O6WA
chains in the Genus database with same CATH superfamily

4XL9A 2BX6A 4JRAC 4XOTA 2VFNA 2VFQA 3DU1X 1KCDA 2IOUG 2PYGA 2NT9A 4OJOA 5C1EA 3SQVA 3B8YA 3KRGA 4AVZA 1DBGA 3EQNA 4Z06A 5JLVC 1TYWA 3WWGA 2VBMA 2V5IA 2X3HA 4V02C 4YDTA 1QRCA 3UW0A 4XM3A 3SZEA 3VMWA 4C2LA 5DNSA 1O8LA 1KCCA 2NSTA 1KTWA 3NB2A 1OFMA 4OM9A 3JX8A 2W7ZA 4KH3A 4XONA 1O8GA 2F3LA 2B0RA 3PSZA 1O8DA 3T9GA 3TH0A 1PLUA 4YZXA 3VSUA 4YEIA 2NSPA 1LM1A 1O8FA 1K8FA 2NZMA 2VJIA 1VBLA 1IDKA 4MR0A 4OJPA 4OJLA 1PXZA 4XR6A 2ODLA 1LLWA 2PYHA 1HG8A 4XLHA 1LLZA 3AK5A 2BM5A 1EZGA 1JRGA 3GQAA 1DBOA 2VJJA 4EW9A 4NK6A 4XMYA 4XLAA 4OPWA 3GRHA 1HF2A 1DABA 3PETA 1PE9A 4XLCA 3NAWA 1O8KA 3GQ8A 4YC5A 3N6ZA 4YZ0A 3FY3A 2NTBA 2EWEA 4OZYA 4URRA 2QXZA 1RU4A 2VFMA 1K5CA 4XKVA 1O8IA 1RMGA 4OZZA 4OJ6A 2NT6A 2XTWA 1WMRA 1IA5A 4YEJA 3B4NA 1OFDA 3EQOA 1RWRA 2BM4A 2O0VA 1QA3A 1CLWA 2QYUA 1TYXA 4XOPA 3GQ7A 1OGOX 2IQ7A 2VBKA 2XC1A 4W8SA 4YELA 4XLFA 3ML3A 4W8QA 1O8EA 1BHEA 2NTPA 4YZQA 4XORA 2NTQA 2Z8GA 4W8RA 2XTXA 1O8MA 3BH6B 4OJ5A 4XN3A 4XKWA 2O17A 4XNFA 4W8TA 1QA1A 3RIQA 5JMCB 1O8JA 1IB4A 3P4GA 1K4ZA 2O04A 3ZPPA 4MXNA 2X6YA 1BN8A 1EA0A 3BH7B 3LJYA 3VSTA 4YZAA 2QY1A 1QJVA 2INVA 4Z05A 2J8IA 1EE6A 3JURA 2VFPA 3SYJA 5C1CA 1QA2A 4YFOA 1OGMX 2X6XA 2XT4A 1JTAA 1AIRA 1OFEA 1O88A 4PMHA 2XT2A 1QQ1A 1L1IA 1WXRA 3ZSCA 2XTYA 1O8HA 3LMWA 2UVFA 4I84A 4XQFA 2BM6A 3GQ9A 4XN0A 3H09A 3N90A 1X0CA 3VSVA 2UVEA 4YCQA 1CZFA 2VBEA 3VMVA 1TYUA 1QCXA 1H80A 4U49A 1NHCA 1XG2A 2J8KA 2VFOA 3B90A 2QX3A 1GQ8A 1IDJA 1OOCA 2O1DA 2X85A 4HWVA 4NK8A 3SUCA 2INUA 2PECA 1KQ5A 1TYVA 3PSSA 2O0WA 5AMVA 2X6WA 1TSPA 2BM7A 4XLEA 1QRBA 2BSPA 2YUHA 2QZAA 4Z03A 3LYCA 2G0YA 4U4BA 1OFLA 3SY2A 2O6WA
chains in the Genus database with same CATH topology

3DU1X 3SQVA 4YCQA 2XTXA 4YDTA 2J8KA 5DNSA 3NAWA 4YC5A 3NB2A 3PSSA 2XTWA 4YFOA 3PSZA 2XT4A 4YEIA 2QZAA 2XT2A 2QYUA 2XTYA 3SY2A 2O6WA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DU1 X;  3SQV A;  4YCQ A;  2XTX A;  4YDT A;  2J8K A;  5DNS A;  3NAW A;  4YC5 A;  3NB2 A;  3PSS A;  2XTW A;  4YFO A;  3PSZ A;  2XT4 A;  4YEI A;  2QZA A;  2XT2 A;  2QYU A;  2XTY A;  3SY2 A;  2O6W A; 
#chains in the Genus database with same CATH topology
 4XL9 A;  2BX6 A;  4JRA C;  4XOT A;  2VFN A;  2VFQ A;  3DU1 X;  1KCD A;  2IOU G;  2PYG A;  2NT9 A;  4OJO A;  5C1E A;  3SQV A;  3B8Y A;  3KRG A;  4AVZ A;  1DBG A;  3EQN A;  4Z06 A;  5JLV C;  1TYW A;  3WWG A;  2VBM A;  2V5I A;  2X3H A;  4V02 C;  4YDT A;  1QRC A;  3UW0 A;  4XM3 A;  3SZE A;  3VMW A;  4C2L A;  5DNS A;  1O8L A;  1KCC A;  2NST A;  1KTW A;  3NB2 A;  1OFM A;  4OM9 A;  3JX8 A;  2W7Z A;  4KH3 A;  4XON A;  1O8G A;  2F3L A;  2B0R A;  3PSZ A;  1O8D A;  3T9G A;  3TH0 A;  1PLU A;  4YZX A;  3VSU A;  4YEI A;  2NSP A;  1LM1 A;  1O8F A;  1K8F A;  2NZM A;  2VJI A;  1VBL A;  1IDK A;  4MR0 A;  4OJP A;  4OJL A;  1PXZ A;  4XR6 A;  2ODL A;  1LLW A;  2PYH A;  1HG8 A;  4XLH A;  1LLZ A;  3AK5 A;  2BM5 A;  1EZG A;  1JRG A;  3GQA A;  1DBO A;  2VJJ A;  4EW9 A;  4NK6 A;  4XMY A;  4XLA A;  4OPW A;  3GRH A;  1HF2 A;  1DAB A;  3PET A;  1PE9 A;  4XLC A;  3NAW A;  1O8K A;  3GQ8 A;  4YC5 A;  3N6Z A;  4YZ0 A;  3FY3 A;  2NTB A;  2EWE A;  4OZY A;  4URR A;  2QXZ A;  1RU4 A;  2VFM A;  1K5C A;  4XKV A;  1O8I A;  1RMG A;  4OZZ A;  4OJ6 A;  2NT6 A;  2XTW A;  1WMR A;  1IA5 A;  4YEJ A;  3B4N A;  1OFD A;  3EQO A;  1RWR A;  2BM4 A;  2O0V A;  1QA3 A;  1CLW A;  2QYU A;  1TYX A;  4XOP A;  3GQ7 A;  1OGO X;  2IQ7 A;  2VBK A;  2XC1 A;  4W8S A;  4YEL A;  4XLF A;  3ML3 A;  4W8Q A;  1O8E A;  1BHE A;  2NTP A;  4YZQ A;  4XOR A;  2NTQ A;  2Z8G A;  4W8R A;  2XTX A;  1O8M A;  3BH6 B;  4OJ5 A;  4XN3 A;  4XKW A;  2O17 A;  4XNF A;  4W8T A;  1QA1 A;  3RIQ A;  5JMC B;  1O8J A;  1IB4 A;  3P4G A;  1K4Z A;  2O04 A;  3ZPP A;  4MXN A;  2X6Y A;  1BN8 A;  1EA0 A;  3BH7 B;  3LJY A;  3VST A;  4YZA A;  2QY1 A;  1QJV A;  2INV A;  4Z05 A;  2J8I A;  1EE6 A;  3JUR A;  2VFP A;  3SYJ A;  5C1C A;  1QA2 A;  4YFO A;  1OGM X;  2X6X A;  2XT4 A;  1JTA A;  1AIR A;  1OFE A;  1O88 A;  4PMH A;  2XT2 A;  1QQ1 A;  1L1I A;  1WXR A;  3ZSC A;  2XTY A;  1O8H A;  3LMW A;  2UVF A;  4I84 A;  4XQF A;  2BM6 A;  3GQ9 A;  4XN0 A;  3H09 A;  3N90 A;  1X0C A;  3VSV A;  2UVE A;  4YCQ A;  1CZF A;  2VBE A;  3VMV A;  1TYU A;  1QCX A;  1H80 A;  4U49 A;  1NHC A;  1XG2 A;  2J8K A;  2VFO A;  3B90 A;  2QX3 A;  1GQ8 A;  1IDJ A;  1OOC A;  2O1D A;  2X85 A;  4HWV A;  4NK8 A;  3SUC A;  2INU A;  2PEC A;  1KQ5 A;  1TYV A;  3PSS A;  2O0W A;  5AMV A;  2X6W A;  1TSP A;  2BM7 A;  4XLE A;  1QRB A;  2BSP A;  2YUH A;  2QZA A;  4Z03 A;  3LYC A;  2G0Y A;  4U4B A;  1OFL A;  3SY2 A;  2O6W A; 
#chains in the Genus database with same CATH homology
 3DU1 X;  3SQV A;  4YCQ A;  2XTX A;  4YDT A;  2J8K A;  5DNS A;  3NAW A;  4YC5 A;  3NB2 A;  3PSS A;  2XTW A;  4YFO A;  3PSZ A;  2XT4 A;  4YEI A;  2QZA A;  2XT2 A;  2QYU A;  2XTY A;  3SY2 A;  2O6W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XTXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations