2YUH | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	179
structure length	179
Chain Sequence	GSSGSSGSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWDSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Homo sapiens
publication title	Solution structure of the C-terminal region in human tubulin folding cofactor C rcsb
molecule keywords	Tubulin-specific chaperone C
total genus	27
structure length	179
sequence length	179
ec nomenclature
pdb deposition date	2007-04-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07986	TBCC	Tubulin binding cofactor C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.70	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	2yuhA01

3BH6B 1K8FA 4V02C 2BX6A 2YUHA 2B0RA 3BH7B 1HF2A 1K4ZA 1KQ5A
chains in the Genus database with same CATH superfamily

4XLFA 2NSPA 2BSPA 4YELA 5C1CA 1QA2A 2VJJA 4YC5A 4NK6A 4XNFA 1JTAA 3GQAA 1DABA 3GQ7A 4XOTA 4MR0A 3SYJA 3VSTA 2X6XA 1KTWA 1O8MA 2QZAA 2XTYA 4XLHA 2BM6A 2QYUA 4Z05A 2INVA 3PETA 1TYXA 1RMGA 2XTWA 2NSTA 2QX3A 3TH0A 1K4ZA 1X0CA 1TYUA 4XMYA 3FY3A 3P4GA 2VFQA 3DU1X 4XM3A 1IDKA 4XONA 4Z06A 1OFLA 1WMRA 2VBMA 1RU4A 2VBKA 4XQFA 1K5CA 3RIQA 2O0WA 2VFNA 2XC1A 1BHEA 1QA3A 3BH6B 4YFOA 2X6YA 3T9GA 1RWRA 1DBOA 3GRHA 1PXZA 5JLVC 4W8RA 4XN0A 2EWEA 4I84A 1KCDA 2O17A 4OJ5A 1QRCA 4YEJA 4PMHA 2X3HA 2X6WA 1EE6A 4OZZA 4U4BA 2UVEA 4YDTA 4V02C 4W8TA 1NHCA 4NK8A 4OZYA 2XT4A 4W8QA 4JRAC 2YUHA 1O8DA 2O1DA 2BM7A 1QA1A 4C2LA 4OJPA 3ZPPA 3BH7B 4XKWA 2NTQA 1IA5A 2V5IA 3NB2A 3VSUA 1VBLA 3GQ8A 2NT9A 2XT2A 2IQ7A 1TSPA 3AK5A 1L1IA 1WXRA 2VFOA 1OFDA 3EQNA 4XORA 3WWGA 1OFMA 3N6ZA 4U49A 4XOPA 3ZSCA 2NTBA 2BM4A 2J8IA 1XG2A 1O88A 3LMWA 3PSSA 3NAWA 1O8FA 3VSVA 1AIRA 1K8FA 2J8KA 2ODLA 2VFPA 4OJLA 4OPWA 1O8HA 1OGOX 1LLWA 4YZ0A 1O8LA 1QCXA 3B90A 3SZEA 1KCCA 2B0RA 2PYGA 1JRGA 4XLAA 4XL9A 1EA0A 3SUCA 1QRBA 4URRA 2G0YA 4XKVA 3SY2A 1TYWA 5C1EA 3H09A 1OOCA 1O8KA 1O8JA 4YEIA 2VFMA 1CZFA 1DBGA 1LLZA 4YZAA 5JMCB 1PE9A 3PSZA 2INUA 4YCQA 4YZXA 1KQ5A 3B4NA 1GQ8A 4KH3A 1H80A 2NT6A 2W7ZA 1O8IA 2VBEA 1O8EA 4XN3A 5AMVA 2Z8GA 4OJOA 2XTXA 1IDJA 1OFEA 2IOUG 2VJIA 2O04A 1IB4A 1LM1A 3JX8A 2UVFA 3VMVA 2BX6A 1O8GA 4XLCA 5DNSA 1PLUA 2NZMA 3ML3A 2O6WA 4MXNA 3UW0A 3LJYA 3SQVA 3JURA 1BN8A 2BM5A 3B8YA 3N90A 4XLEA 2PYHA 4Z03A 2O0VA 1HG8A 1EZGA 1TYVA 2PECA 2NTPA 4OM9A 3VMWA 3KRGA 3EQOA 3GQ9A 3LYCA 4W8SA 4XR6A 2QY1A 4HWVA 1OGMX 2F3LA 4AVZA 4OJ6A 1QQ1A 4YZQA 1QJVA 2QXZA 2X85A 1HF2A 1CLWA 4EW9A
chains in the Genus database with same CATH topology

2VFOA 3BH6B 3N6ZA 1QA2A 2BM4A 2J8IA 2W7ZA 5JLVC 2VFPA 1K8FA 1DABA 4OJ5A 1QRCA 4OJOA 3AK5A 4OJLA 4OPWA 2IOUG 4V02C 3SYJA 3SZEA 3JX8A 4KH3A 2B0RA 2BX6A 4JRAC 2YUHA 1WXRA 2BM7A 2BM6A 1QRBA 3ML3A 2G0YA 3LJYA 1QA1A 3PETA 1TYXA 1TYWA 2BM5A 4OJPA 3H09A 2VFNA 3BH7B 3N90A 3TH0A 1K4ZA 1TYVA 2V5IA 2VFMA 4OM9A 1TYUA 3P4GA 3LYCA 2VFQA 5JMCB 2F3LA 4OJ6A 1QQ1A 3RIQA 1TSPA 1HF2A 2XC1A 1CLWA 1KQ5A 1QA3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3BH6 B;  1K8F A;  4V02 C;  2BX6 A;  2YUH A;  2B0R A;  3BH7 B;  1HF2 A;  1K4Z A;  1KQ5 A; 
#chains in the Genus database with same CATH topology
 4XLF A;  2NSP A;  2BSP A;  4YEL A;  5C1C A;  1QA2 A;  2VJJ A;  4YC5 A;  4NK6 A;  4XNF A;  1JTA A;  3GQA A;  1DAB A;  3GQ7 A;  4XOT A;  4MR0 A;  3SYJ A;  3VST A;  2X6X A;  1KTW A;  1O8M A;  2QZA A;  2XTY A;  4XLH A;  2BM6 A;  2QYU A;  4Z05 A;  2INV A;  3PET A;  1TYX A;  1RMG A;  2XTW A;  2NST A;  2QX3 A;  3TH0 A;  1K4Z A;  1X0C A;  1TYU A;  4XMY A;  3FY3 A;  3P4G A;  2VFQ A;  3DU1 X;  4XM3 A;  1IDK A;  4XON A;  4Z06 A;  1OFL A;  1WMR A;  2VBM A;  1RU4 A;  2VBK A;  4XQF A;  1K5C A;  3RIQ A;  2O0W A;  2VFN A;  2XC1 A;  1BHE A;  1QA3 A;  3BH6 B;  4YFO A;  2X6Y A;  3T9G A;  1RWR A;  1DBO A;  3GRH A;  1PXZ A;  5JLV C;  4W8R A;  4XN0 A;  2EWE A;  4I84 A;  1KCD A;  2O17 A;  4OJ5 A;  1QRC A;  4YEJ A;  4PMH A;  2X3H A;  2X6W A;  1EE6 A;  4OZZ A;  4U4B A;  2UVE A;  4YDT A;  4V02 C;  4W8T A;  1NHC A;  4NK8 A;  4OZY A;  2XT4 A;  4W8Q A;  4JRA C;  2YUH A;  1O8D A;  2O1D A;  2BM7 A;  1QA1 A;  4C2L A;  4OJP A;  3ZPP A;  3BH7 B;  4XKW A;  2NTQ A;  1IA5 A;  2V5I A;  3NB2 A;  3VSU A;  1VBL A;  3GQ8 A;  2NT9 A;  2XT2 A;  2IQ7 A;  1TSP A;  3AK5 A;  1L1I A;  1WXR A;  2VFO A;  1OFD A;  3EQN A;  4XOR A;  3WWG A;  1OFM A;  3N6Z A;  4U49 A;  4XOP A;  3ZSC A;  2NTB A;  2BM4 A;  2J8I A;  1XG2 A;  1O88 A;  3LMW A;  3PSS A;  3NAW A;  1O8F A;  3VSV A;  1AIR A;  1K8F A;  2J8K A;  2ODL A;  2VFP A;  4OJL A;  4OPW A;  1O8H A;  1OGO X;  1LLW A;  4YZ0 A;  1O8L A;  1QCX A;  3B90 A;  3SZE A;  1KCC A;  2B0R A;  2PYG A;  1JRG A;  4XLA A;  4XL9 A;  1EA0 A;  3SUC A;  1QRB A;  4URR A;  2G0Y A;  4XKV A;  3SY2 A;  1TYW A;  5C1E A;  3H09 A;  1OOC A;  1O8K A;  1O8J A;  4YEI A;  2VFM A;  1CZF A;  1DBG A;  1LLZ A;  4YZA A;  5JMC B;  1PE9 A;  3PSZ A;  2INU A;  4YCQ A;  4YZX A;  1KQ5 A;  3B4N A;  1GQ8 A;  4KH3 A;  1H80 A;  2NT6 A;  2W7Z A;  1O8I A;  2VBE A;  1O8E A;  4XN3 A;  5AMV A;  2Z8G A;  4OJO A;  2XTX A;  1IDJ A;  1OFE A;  2IOU G;  2VJI A;  2O04 A;  1IB4 A;  1LM1 A;  3JX8 A;  2UVF A;  3VMV A;  2BX6 A;  1O8G A;  4XLC A;  5DNS A;  1PLU A;  2NZM A;  3ML3 A;  2O6W A;  4MXN A;  3UW0 A;  3LJY A;  3SQV A;  3JUR A;  1BN8 A;  2BM5 A;  3B8Y A;  3N90 A;  4XLE A;  2PYH A;  4Z03 A;  2O0V A;  1HG8 A;  1EZG A;  1TYV A;  2PEC A;  2NTP A;  4OM9 A;  3VMW A;  3KRG A;  3EQO A;  3GQ9 A;  3LYC A;  4W8S A;  4XR6 A;  2QY1 A;  4HWV A;  1OGM X;  2F3L A;  4AVZ A;  4OJ6 A;  1QQ1 A;  4YZQ A;  1QJV A;  2QXZ A;  2X85 A;  1HF2 A;  1CLW A;  4EW9 A; 
#chains in the Genus database with same CATH homology
 2VFO A;  3BH6 B;  3N6Z A;  1QA2 A;  2BM4 A;  2J8I A;  2W7Z A;  5JLV C;  2VFP A;  1K8F A;  1DAB A;  4OJ5 A;  1QRC A;  4OJO A;  3AK5 A;  4OJL A;  4OPW A;  2IOU G;  4V02 C;  3SYJ A;  3SZE A;  3JX8 A;  4KH3 A;  2B0R A;  2BX6 A;  4JRA C;  2YUH A;  1WXR A;  2BM7 A;  2BM6 A;  1QRB A;  3ML3 A;  2G0Y A;  3LJY A;  1QA1 A;  3PET A;  1TYX A;  1TYW A;  2BM5 A;  4OJP A;  3H09 A;  2VFN A;  3BH7 B;  3N90 A;  3TH0 A;  1K4Z A;  1TYV A;  2V5I A;  2VFM A;  4OM9 A;  1TYU A;  3P4G A;  3LYC A;  2VFQ A;  5JMC B;  2F3L A;  4OJ6 A;  1QQ1 A;  3RIQ A;  1TSP A;  1HF2 A;  2XC1 A;  1CLW A;  1KQ5 A;  1QA3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2YUHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations