The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
183
|
sequence length |
549
|
structure length |
549
|
Chain Sequence |
REFMAVTANNSQLLTWWHNTGEINTQTPVADGNVRQSGLYSVKVQTTPASSSLYYDSFVYLAIPGNGMSDQLQYTQGYNQTQAWTSFLYSHDATVKISRNGSSANSNVVIRPTSLNFPVRYDNQSVYITVPYSPTGYRFSVEFDDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMYPGTILQDVFYHTDDDGLKMYYSNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQAYANAGNNPGIFGAVNNYLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQITVTDFSIEGFTVGNTTITASNAASVGRIDGVDPAYAGSVHYID
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Aspergillus niger
|
| molecule keywords |
Isopullulanase
|
| total genus |
183
|
| structure length |
549
|
| sequence length |
549
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.2.1.57: Isopullulanase. |
| pdb deposition date | 2007-09-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03718 | Glyco_hydro_49 | Glycosyl hydrolase family 49 |
| A | PF18783 | IPU_b_solenoid | Isopullulanase beta-solenoid repeat |
| A | PF18841 | B_solenoid_dext | Beta solenoid repeat from Dextranase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Dex49a from penicillium minioluteum complex, domain 1 | Dextranase, N-terminal | ||
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like |
#chains in the Genus database with same CATH superfamily 4Z03 A; 4I84 A; 1RWR A; 3GQ9 A; 2PEC A; 1H80 A; 2UVE A; 4XMY A; 2PYG A; 3ZSC A; 3EQO A; 4XOP A; 5AMV A; 3GQ8 A; 4NK6 A; 2INV A; 1PE9 A; 3VSV A; 4AVZ A; 3EQN A; 4Z05 A; 1BN8 A; 2VBM A; 2VBK A; 4YZA A; 2X6Y A; 3B4N A; 1HG8 A; 3UW0 A; 1OGM X; 1O8H A; 4HWV A; 4XLC A; 1WMR A; 1O8K A; 4W8S A; 2IQ7 A; 1VBL A; 1EE6 A; 4OJP A; 3FY3 A; 4PMH A; 4W8T A; 3SUC A; 3LMW A; 3VSU A; 2UVF A; 2X6X A; 4XOT A; 3VMW A; 2VJJ A; 2QY1 A; 3GQA A; 4XLF A; 2VJI A; 4URR A; 3VST A; 4W8Q A; 1CZF A; 4YEL A; 3GQ7 A; 1OGO X; 2QX3 A; 2O0W A; 1IB4 A; 4XM3 A; 4OJL A; 1JRG A; 2O04 A; 4MXN A; 2INU A; 1DBO A; 1O8E A; 1AIR A; 4XON A; 2X3H A; 2X6W A; 4C2L A; 2NTB A; 2EWE A; 1O8D A; 1O8G A; 2NST A; 1O8I A; 1O8F A; 1XG2 A; 1RU4 A; 2NSP A; 1OOC A; 4EW9 A; 2BSP A; 4XNF A; 4XKW A; 2VBE A; 1DBG A; 1O8L A; 1KCD A; 2O1D A; 2X85 A; 4XN0 A; 1IDJ A; 2O0V A; 4OJ6 A; 3ZPP A; 2O17 A; 1KTW A; 4XN3 A; 3B8Y A; 1O88 A; 4NK8 A; 1NHC A; 2ODL A; 5C1E A; 3KRG A; 1JTA A; 2NT6 A; 1KCC A; 4Z06 A; 3T9G A; 2NTQ A; 4XLA A; 1BHE A; 4XOR A; 4YZ0 A; 1OFM A; 1X0C A; 4YZQ A; 1OFL A; 4MR0 A; 2NT9 A; 4W8R A; 1RMG A; 1O8M A; 4OZZ A; 2QXZ A; 4XL9 A; 2NZM A; 2PYH A; 1PLU A; 1K5C A; 1IA5 A; 4YEJ A; 2Z8G A; 1QJV A; 3JUR A; 4OZY A; 4XLE A; 4YZX A; 1GQ8 A; 4U4B A; 4XLH A; 1IDK A; 3VMV A; 3WWG A; 1O8J A; 4XR6 A; 5C1C A; 1PXZ A; 4XKV A; 1QCX A; 2NTP A; 4XQF A; 4OJ5 A; 4OJO A; 3GRH A; 4U49 A; 3B90 A; #chains in the Genus database with same CATH topology 4Z03 A; 3PSZ A; 4I84 A; 1TYV A; 3SZE A; 1RWR A; 3GQ9 A; 4YC5 A; 2PEC A; 1WXR A; 1H80 A; 2UVE A; 4XMY A; 2PYG A; 3ZSC A; 3EQO A; 4YEI A; 4XOP A; 5AMV A; 3GQ8 A; 4NK6 A; 2QYU A; 2INV A; 1LLZ A; 1PE9 A; 3VSV A; 4AVZ A; 2XT2 A; 3PET A; 2BM5 A; 3EQN A; 4Z05 A; 1TYU A; 2VFQ A; 1BN8 A; 2F3L A; 2VBM A; 2VBK A; 4YZA A; 2X6Y A; 3B4N A; 1HG8 A; 3UW0 A; 1OGM X; 1LM1 A; 5JLV C; 5DNS A; 2QZA A; 1O8H A; 3NB2 A; 4HWV A; 4XLC A; 1QRB A; 1WMR A; 2B0R A; 1CLW A; 1O8K A; 1K4Z A; 1TYX A; 4W8S A; 3N6Z A; 2IQ7 A; 2XTX A; 1VBL A; 1EE6 A; 1OFE A; 4OJP A; 3FY3 A; 4PMH A; 4W8T A; 2J8K A; 3SUC A; 3LMW A; 3VSU A; 1K8F A; 1OFD A; 2UVF A; 2XTY A; 2VFO A; 2W7Z A; 2VFP A; 2X6X A; 1EA0 A; 4XOT A; 3VMW A; 2VJJ A; 2QY1 A; 3GQA A; 4XLF A; 1QQ1 A; 2VJI A; 4URR A; 3VST A; 1KQ5 A; 4W8Q A; 1CZF A; 1QRC A; 4YEL A; 2BM6 A; 3GQ7 A; 1OGO X; 2BX6 A; 2QX3 A; 5JMC B; 2O0W A; 1IB4 A; 4XM3 A; 3SYJ A; 3P4G A; 4OJL A; 1EZG A; 1JRG A; 2O04 A; 2INU A; 4MXN A; 3TH0 A; 1DBO A; 1O8E A; 1AIR A; 4XON A; 2X3H A; 2YUH A; 4KH3 A; 4OM9 A; 2X6W A; 4OPW A; 3SQV A; 4C2L A; 3RIQ A; 1DAB A; 2O6W A; 2XTW A; 2NTB A; 2EWE A; 1O8D A; 1O8G A; 2NST A; 1HF2 A; 1O8I A; 1O8F A; 4V02 C; 1XG2 A; 1RU4 A; 2NSP A; 1OOC A; 4EW9 A; 2BSP A; 3BH6 B; 4XNF A; 4XKW A; 2VBE A; 1DBG A; 3DU1 X; 1O8L A; 3H09 A; 1KCD A; 2O1D A; 3BH7 B; 3JX8 A; 2X85 A; 4XN0 A; 1IDJ A; 2O0V A; 4OJ6 A; 3ZPP A; 2O17 A; 1KTW A; 3AK5 A; 4XN3 A; 3B8Y A; 2IOU G; 1O88 A; 2J8I A; 1LLW A; 4NK8 A; 1NHC A; 2ODL A; 5C1E A; 3KRG A; 1QA2 A; 2VFN A; 1JTA A; 2NT6 A; 1KCC A; 1QA3 A; 4Z06 A; 3T9G A; 2NTQ A; 4XLA A; 1BHE A; 4XOR A; 4YZ0 A; 1OFM A; 1X0C A; 4YZQ A; 2G0Y A; 1OFL A; 4MR0 A; 2NT9 A; 4W8R A; 4JRA C; 1RMG A; 2XC1 A; 1O8M A; 4OZZ A; 4YCQ A; 2BM4 A; 2QXZ A; 4YFO A; 3SY2 A; 1TYW A; 4XL9 A; 2NZM A; 4YDT A; 2PYH A; 1PLU A; 1K5C A; 1IA5 A; 3PSS A; 3LYC A; 4YEJ A; 2Z8G A; 1QJV A; 3JUR A; 4OZY A; 4XLE A; 4YZX A; 1GQ8 A; 3LJY A; 4U4B A; 3NAW A; 4XLH A; 1TSP A; 2BM7 A; 1IDK A; 3VMV A; 2XT4 A; 3WWG A; 1O8J A; 4XR6 A; 5C1C A; 1PXZ A; 1QA1 A; 4XKV A; 1QCX A; 2NTP A; 4XQF A; 1L1I A; 2V5I A; 3N90 A; 4OJ5 A; 4OJO A; 3GRH A; 4U49 A; 2VFM A; 3B90 A; 3ML3 A; #chains in the Genus database with same CATH homology 4Z03 A; 4I84 A; 1RWR A; 3GQ9 A; 2PEC A; 1H80 A; 2UVE A; 4XMY A; 2PYG A; 3ZSC A; 3EQO A; 4XOP A; 5AMV A; 3GQ8 A; 4NK6 A; 2INV A; 1PE9 A; 3VSV A; 4AVZ A; 3EQN A; 4Z05 A; 1BN8 A; 2VBM A; 2VBK A; 4YZA A; 2X6Y A; 3B4N A; 1HG8 A; 3UW0 A; 1OGM X; 1O8H A; 4HWV A; 4XLC A; 1WMR A; 1O8K A; 4W8S A; 2IQ7 A; 1VBL A; 1EE6 A; 4OJP A; 3FY3 A; 4PMH A; 4W8T A; 3SUC A; 3LMW A; 3VSU A; 2UVF A; 2X6X A; 4XOT A; 3VMW A; 2VJJ A; 2QY1 A; 3GQA A; 4XLF A; 2VJI A; 4URR A; 3VST A; 4W8Q A; 1CZF A; 4YEL A; 3GQ7 A; 1OGO X; 2QX3 A; 2O0W A; 1IB4 A; 4XM3 A; 4OJL A; 1JRG A; 2O04 A; 4MXN A; 2INU A; 1DBO A; 1O8E A; 1AIR A; 4XON A; 2X3H A; 2X6W A; 4C2L A; 2NTB A; 2EWE A; 1O8D A; 1O8G A; 2NST A; 1O8I A; 1O8F A; 1XG2 A; 1RU4 A; 2NSP A; 1OOC A; 4EW9 A; 2BSP A; 4XNF A; 4XKW A; 2VBE A; 1DBG A; 1O8L A; 1KCD A; 2O1D A; 2X85 A; 4XN0 A; 1IDJ A; 2O0V A; 4OJ6 A; 3ZPP A; 2O17 A; 1KTW A; 4XN3 A; 3B8Y A; 1O88 A; 4NK8 A; 1NHC A; 2ODL A; 5C1E A; 3KRG A; 1JTA A; 2NT6 A; 1KCC A; 4Z06 A; 3T9G A; 2NTQ A; 4XLA A; 1BHE A; 4XOR A; 4YZ0 A; 1OFM A; 1X0C A; 4YZQ A; 1OFL A; 4MR0 A; 2NT9 A; 4W8R A; 1RMG A; 1O8M A; 4OZZ A; 2QXZ A; 4XL9 A; 2NZM A; 2PYH A; 1PLU A; 1K5C A; 1IA5 A; 4YEJ A; 2Z8G A; 1QJV A; 3JUR A; 4OZY A; 4XLE A; 4YZX A; 1GQ8 A; 4U4B A; 4XLH A; 1IDK A; 3VMV A; 3WWG A; 1O8J A; 4XR6 A; 5C1C A; 1PXZ A; 4XKV A; 1QCX A; 2NTP A; 4XQF A; 4OJ5 A; 4OJO A; 3GRH A; 4U49 A; 3B90 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
