3FY3 | Genus

Total Genus 77

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	77
sequence length	234
structure length	234
Chain Sequence	NGIVPDAGHQGPDVSAVNGGTQVINIVTPNNEGISHNQYQDFNVGKPGAVFNNALEAGQSQLAGHLNANSNLNGQAASLILNEVVSRNPSFLLGQQEVFGIAAEYVLSNPNGITCDGCGFINTSRSSLVVGNPLFENGQLKGYSTLNNTNLLSLGKNGLNTTGLLDLIAPRIDSRGKITAAEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQSGRIRIINTAEGSGVKL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin
source organism	Proteus mirabilis
publication title	Structural and functional studies of truncated hemolysin A from Proteus mirabilis. pubmed doi rcsb
molecule keywords	Hemolysin
total genus	77
structure length	234
sequence length	234
ec nomenclature
pdb deposition date	2009-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05860	Haemagg_act	haemagglutination activity domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	3fy3A00

2NZMA 3B4NA 3EQNA 4MXNA 3VSVA 1GQ8A 2X6WA 4OJOA 2NTQA 2IQ7A 1X0CA 1OFLA 1IDJA 1OOCA 4OJ5A 4U49A 1O8LA 2ODLA 4OJ6A 1O8DA 1OFMA 4XONA 1BN8A 4XLCA 1HG8A 3B90A 4PMHA 1AIRA 4I84A 4W8RA 3KRGA 3JURA 3ZPPA 4YZAA 3WWGA 4XM3A 1O88A 4OZZA 4AVZA 2VJIA 1DBGA 4YZQA 4XLFA 5C1EA 3GQ9A 4Z06A 4W8SA 4HWVA 3ZSCA 2X85A 2QXZA 2NT9A 4NK6A 4XMYA 1RWRA 3VMWA 4XORA 2X3HA 5AMVA 1PE9A 1BHEA 2X6YA 4U4BA 1O8IA 1KTWA 1NHCA 4NK8A 2X6XA 3FY3A 2Z8GA 4YZXA 4XN3A 4OJPA 4XLEA 4MR0A 1K5CA 1QCXA 3GQAA 4URRA 2QX3A 2EWEA 2VBKA 1JTAA 3UW0A 2O0VA 3VSTA 4OJLA 1RMGA 1O8HA 3VSUA 2O0WA 1O8GA 1H80A 2PECA 4XR6A 1IB4A 2VJJA 1CZFA 1RU4A 1WMRA 2O04A 1IDKA 2NSPA 1EE6A 1OGMX 1O8JA 4XN0A 3VMVA 4W8QA 2O17A 2INVA 2BSPA 4Z03A 3T9GA 2PYHA 3SUCA 1OGOX 1O8FA 4Z05A 3GQ7A 2NTBA 4XKVA 3LMWA 4XOTA 4W8TA 4XL9A 1IA5A 2NT6A 4YELA 1PXZA 1VBLA 4C2LA 4XNFA 2NSTA 2UVEA 5C1CA 2NTPA 2PYGA 3GQ8A 1O8MA 2VBMA 1PLUA 1JRGA 3GRHA 4YEJA 1KCDA 2INUA 1DBOA 3B8YA 2QY1A 3EQOA 4XLAA 1XG2A 2UVFA 4XLHA 1QJVA 4OZYA 1O8EA 4XQFA 4YZ0A 2VBEA 1KCCA 4XKWA 4EW9A 1O8KA 4XOPA 2O1DA
chains in the Genus database with same CATH superfamily

3LJYA 2VFMA 4YCQA 2XT2A 5JLVC 2NZMA 3B4NA 3EQNA 1TYUA 4MXNA 2BM4A 3BH6B 3VSVA 1GQ8A 2X6WA 2XTYA 4OJOA 2NTQA 2IQ7A 1X0CA 2QYUA 1OFLA 2BM6A 1IDJA 1OOCA 1QA1A 4OJ5A 4U49A 1O8LA 2ODLA 4OJ6A 1LLZA 1O8DA 1QA3A 2W7ZA 2VFPA 1OFMA 4XONA 1BN8A 4XLCA 1HG8A 2VFQA 3B90A 4PMHA 4V02C 1AIRA 3DU1X 4I84A 4W8RA 3KRGA 3JURA 3BH7B 3ZPPA 4YZAA 3WWGA 4XM3A 1O88A 1LLWA 4OZZA 1K4ZA 4AVZA 1DABA 2VJIA 2XC1A 1DBGA 4YZQA 4XLFA 2J8KA 3PSZA 3GQ9A 5C1EA 4Z06A 3NAWA 4W8SA 4HWVA 3ZSCA 2X85A 2QXZA 1LM1A 2NT9A 1QRCA 2VFOA 1RWRA 2J8IA 4NK6A 4XMYA 4YFOA 3VMWA 4XORA 2X3HA 5AMVA 1PE9A 1BHEA 2X6YA 4U4BA 1K8FA 1O8IA 3SQVA 1KTWA 3SY2A 1KQ5A 2QZAA 1NHCA 4NK8A 2X6XA 1OFDA 3FY3A 5DNSA 2Z8GA 3PETA 4XN3A 4OJPA 4YZXA 1TSPA 4MR0A 2YUHA 4XLEA 1K5CA 2BM7A 1QCXA 3GQAA 4URRA 2QX3A 2EWEA 3PSSA 5JMCB 4JRAC 2BX6A 1OFEA 2VBKA 3N90A 4YC5A 1JTAA 1CLWA 3UW0A 2O0VA 2V5IA 3VSTA 2B0RA 4OJLA 3P4GA 1RMGA 3AK5A 1O8HA 3VSUA 1WXRA 2O0WA 1O8GA 3SZEA 1H80A 2PECA 4KH3A 4XR6A 1IB4A 2VJJA 1CZFA 1RU4A 1WMRA 2O04A 1IDKA 2NSPA 1EE6A 1OGMX 2XTXA 3SYJA 1HF2A 1O8JA 4XN0A 3VMVA 4W8QA 1TYWA 2O17A 2INVA 2BSPA 4Z03A 3JX8A 2PYHA 3T9GA 3SUCA 1OGOX 1TYXA 1O8FA 2G0YA 2IOUG 3H09A 2VFNA 4Z05A 3GQ7A 3ML3A 3NB2A 2NTBA 4XKVA 4YEIA 3LMWA 4XOTA 4W8TA 4XL9A 1IA5A 2NT6A 4YELA 1PXZA 1VBLA 4C2LA 4XNFA 1QQ1A 2NSTA 2XTWA 2UVEA 5C1CA 2NTPA 1L1IA 2PYGA 3GQ8A 3LYCA 1O8MA 3N6ZA 2VBMA 1TYVA 1PLUA 1JRGA 2O6WA 3GRHA 4YEJA 2INUA 1KCDA 1QA2A 1DBOA 3B8YA 2QY1A 4YDTA 2F3LA 3EQOA 4XLAA 1XG2A 2UVFA 4XLHA 1QJVA 2XT4A 1O8EA 2BM5A 4OZYA 2VBEA 4XQFA 4YZ0A 1KCCA 1QRBA 3RIQA 3TH0A 4OPWA 1EZGA 4XKWA 4EW9A 1O8KA 4XOPA 1EA0A 4OM9A 2O1DA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2NZM A;  3B4N A;  3EQN A;  4MXN A;  3VSV A;  1GQ8 A;  2X6W A;  4OJO A;  2NTQ A;  2IQ7 A;  1X0C A;  1OFL A;  1IDJ A;  1OOC A;  4OJ5 A;  4U49 A;  1O8L A;  2ODL A;  4OJ6 A;  1O8D A;  1OFM A;  4XON A;  1BN8 A;  4XLC A;  1HG8 A;  3B90 A;  4PMH A;  1AIR A;  4I84 A;  4W8R A;  3KRG A;  3JUR A;  3ZPP A;  4YZA A;  3WWG A;  4XM3 A;  1O88 A;  4OZZ A;  4AVZ A;  2VJI A;  1DBG A;  4YZQ A;  4XLF A;  5C1E A;  3GQ9 A;  4Z06 A;  4W8S A;  4HWV A;  3ZSC A;  2X85 A;  2QXZ A;  2NT9 A;  4NK6 A;  4XMY A;  1RWR A;  3VMW A;  4XOR A;  2X3H A;  5AMV A;  1PE9 A;  1BHE A;  2X6Y A;  4U4B A;  1O8I A;  1KTW A;  1NHC A;  4NK8 A;  2X6X A;  3FY3 A;  2Z8G A;  4YZX A;  4XN3 A;  4OJP A;  4XLE A;  4MR0 A;  1K5C A;  1QCX A;  3GQA A;  4URR A;  2QX3 A;  2EWE A;  2VBK A;  1JTA A;  3UW0 A;  2O0V A;  3VST A;  4OJL A;  1RMG A;  1O8H A;  3VSU A;  2O0W A;  1O8G A;  1H80 A;  2PEC A;  4XR6 A;  1IB4 A;  2VJJ A;  1CZF A;  1RU4 A;  1WMR A;  2O04 A;  1IDK A;  2NSP A;  1EE6 A;  1OGM X;  1O8J A;  4XN0 A;  3VMV A;  4W8Q A;  2O17 A;  2INV A;  2BSP A;  4Z03 A;  3T9G A;  2PYH A;  3SUC A;  1OGO X;  1O8F A;  4Z05 A;  3GQ7 A;  2NTB A;  4XKV A;  3LMW A;  4XOT A;  4W8T A;  4XL9 A;  1IA5 A;  2NT6 A;  4YEL A;  1PXZ A;  1VBL A;  4C2L A;  4XNF A;  2NST A;  2UVE A;  5C1C A;  2NTP A;  2PYG A;  3GQ8 A;  1O8M A;  2VBM A;  1PLU A;  1JRG A;  3GRH A;  4YEJ A;  1KCD A;  2INU A;  1DBO A;  3B8Y A;  2QY1 A;  3EQO A;  4XLA A;  1XG2 A;  2UVF A;  4XLH A;  1QJV A;  4OZY A;  1O8E A;  4XQF A;  4YZ0 A;  2VBE A;  1KCC A;  4XKW A;  4EW9 A;  1O8K A;  4XOP A;  2O1D A; 
#chains in the Genus database with same CATH topology
 3LJY A;  2VFM A;  4YCQ A;  2XT2 A;  5JLV C;  2NZM A;  3B4N A;  3EQN A;  1TYU A;  4MXN A;  2BM4 A;  3BH6 B;  3VSV A;  1GQ8 A;  2X6W A;  2XTY A;  4OJO A;  2NTQ A;  2IQ7 A;  1X0C A;  2QYU A;  1OFL A;  2BM6 A;  1IDJ A;  1OOC A;  1QA1 A;  4OJ5 A;  4U49 A;  1O8L A;  2ODL A;  4OJ6 A;  1LLZ A;  1O8D A;  1QA3 A;  2W7Z A;  2VFP A;  1OFM A;  4XON A;  1BN8 A;  4XLC A;  1HG8 A;  2VFQ A;  3B90 A;  4PMH A;  4V02 C;  1AIR A;  3DU1 X;  4I84 A;  4W8R A;  3KRG A;  3JUR A;  3BH7 B;  3ZPP A;  4YZA A;  3WWG A;  4XM3 A;  1O88 A;  1LLW A;  4OZZ A;  1K4Z A;  4AVZ A;  1DAB A;  2VJI A;  2XC1 A;  1DBG A;  4YZQ A;  4XLF A;  2J8K A;  3PSZ A;  3GQ9 A;  5C1E A;  4Z06 A;  3NAW A;  4W8S A;  4HWV A;  3ZSC A;  2X85 A;  2QXZ A;  1LM1 A;  2NT9 A;  1QRC A;  2VFO A;  1RWR A;  2J8I A;  4NK6 A;  4XMY A;  4YFO A;  3VMW A;  4XOR A;  2X3H A;  5AMV A;  1PE9 A;  1BHE A;  2X6Y A;  4U4B A;  1K8F A;  1O8I A;  3SQV A;  1KTW A;  3SY2 A;  1KQ5 A;  2QZA A;  1NHC A;  4NK8 A;  2X6X A;  1OFD A;  3FY3 A;  5DNS A;  2Z8G A;  3PET A;  4XN3 A;  4OJP A;  4YZX A;  1TSP A;  4MR0 A;  2YUH A;  4XLE A;  1K5C A;  2BM7 A;  1QCX A;  3GQA A;  4URR A;  2QX3 A;  2EWE A;  3PSS A;  5JMC B;  4JRA C;  2BX6 A;  1OFE A;  2VBK A;  3N90 A;  4YC5 A;  1JTA A;  1CLW A;  3UW0 A;  2O0V A;  2V5I A;  3VST A;  2B0R A;  4OJL A;  3P4G A;  1RMG A;  3AK5 A;  1O8H A;  3VSU A;  1WXR A;  2O0W A;  1O8G A;  3SZE A;  1H80 A;  2PEC A;  4KH3 A;  4XR6 A;  1IB4 A;  2VJJ A;  1CZF A;  1RU4 A;  1WMR A;  2O04 A;  1IDK A;  2NSP A;  1EE6 A;  1OGM X;  2XTX A;  3SYJ A;  1HF2 A;  1O8J A;  4XN0 A;  3VMV A;  4W8Q A;  1TYW A;  2O17 A;  2INV A;  2BSP A;  4Z03 A;  3JX8 A;  2PYH A;  3T9G A;  3SUC A;  1OGO X;  1TYX A;  1O8F A;  2G0Y A;  2IOU G;  3H09 A;  2VFN A;  4Z05 A;  3GQ7 A;  3ML3 A;  3NB2 A;  2NTB A;  4XKV A;  4YEI A;  3LMW A;  4XOT A;  4W8T A;  4XL9 A;  1IA5 A;  2NT6 A;  4YEL A;  1PXZ A;  1VBL A;  4C2L A;  4XNF A;  1QQ1 A;  2NST A;  2XTW A;  2UVE A;  5C1C A;  2NTP A;  1L1I A;  2PYG A;  3GQ8 A;  3LYC A;  1O8M A;  3N6Z A;  2VBM A;  1TYV A;  1PLU A;  1JRG A;  2O6W A;  3GRH A;  4YEJ A;  2INU A;  1KCD A;  1QA2 A;  1DBO A;  3B8Y A;  2QY1 A;  4YDT A;  2F3L A;  3EQO A;  4XLA A;  1XG2 A;  2UVF A;  4XLH A;  1QJV A;  2XT4 A;  1O8E A;  2BM5 A;  4OZY A;  2VBE A;  4XQF A;  4YZ0 A;  1KCC A;  1QRB A;  3RIQ A;  3TH0 A;  4OPW A;  1EZG A;  4XKW A;  4EW9 A;  1O8K A;  4XOP A;  1EA0 A;  4OM9 A;  2O1D A; 
#chains in the Genus database with same CATH homology
 2NZM A;  3B4N A;  3EQN A;  4MXN A;  3VSV A;  1GQ8 A;  2X6W A;  4OJO A;  2NTQ A;  2IQ7 A;  1X0C A;  1OFL A;  1IDJ A;  1OOC A;  4OJ5 A;  4U49 A;  1O8L A;  2ODL A;  4OJ6 A;  1O8D A;  1OFM A;  4XON A;  1BN8 A;  4XLC A;  1HG8 A;  3B90 A;  4PMH A;  1AIR A;  4I84 A;  4W8R A;  3KRG A;  3JUR A;  3ZPP A;  4YZA A;  3WWG A;  4XM3 A;  1O88 A;  4OZZ A;  4AVZ A;  2VJI A;  1DBG A;  4YZQ A;  4XLF A;  5C1E A;  3GQ9 A;  4Z06 A;  4W8S A;  4HWV A;  3ZSC A;  2X85 A;  2QXZ A;  2NT9 A;  4NK6 A;  4XMY A;  1RWR A;  3VMW A;  4XOR A;  2X3H A;  5AMV A;  1PE9 A;  1BHE A;  2X6Y A;  4U4B A;  1O8I A;  1KTW A;  1NHC A;  4NK8 A;  2X6X A;  3FY3 A;  2Z8G A;  4YZX A;  4XN3 A;  4OJP A;  4XLE A;  4MR0 A;  1K5C A;  1QCX A;  3GQA A;  4URR A;  2QX3 A;  2EWE A;  2VBK A;  1JTA A;  3UW0 A;  2O0V A;  3VST A;  4OJL A;  1RMG A;  1O8H A;  3VSU A;  2O0W A;  1O8G A;  1H80 A;  2PEC A;  4XR6 A;  1IB4 A;  2VJJ A;  1CZF A;  1RU4 A;  1WMR A;  2O04 A;  1IDK A;  2NSP A;  1EE6 A;  1OGM X;  1O8J A;  4XN0 A;  3VMV A;  4W8Q A;  2O17 A;  2INV A;  2BSP A;  4Z03 A;  3T9G A;  2PYH A;  3SUC A;  1OGO X;  1O8F A;  4Z05 A;  3GQ7 A;  2NTB A;  4XKV A;  3LMW A;  4XOT A;  4W8T A;  4XL9 A;  1IA5 A;  2NT6 A;  4YEL A;  1PXZ A;  1VBL A;  4C2L A;  4XNF A;  2NST A;  2UVE A;  5C1C A;  2NTP A;  2PYG A;  3GQ8 A;  1O8M A;  2VBM A;  1PLU A;  1JRG A;  3GRH A;  4YEJ A;  1KCD A;  2INU A;  1DBO A;  3B8Y A;  2QY1 A;  3EQO A;  4XLA A;  1XG2 A;  2UVF A;  4XLH A;  1QJV A;  4OZY A;  1O8E A;  4XQF A;  4YZ0 A;  2VBE A;  1KCC A;  4XKW A;  4EW9 A;  1O8K A;  4XOP A;  2O1D A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3FY3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations