The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
397
|
structure length |
397
|
Chain Sequence |
YFQSMQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8.
pubmed doi rcsb |
| molecule keywords |
Acyl-CoA thioester hydrolase ybgC
|
| molecule tags |
Hydrolase
|
| source organism |
Escherichia coli k-12
|
| total genus |
139
|
| structure length |
397
|
| sequence length |
397
|
| ec nomenclature | |
| pdb deposition date | 2009-03-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01095 | Pectinesterase | Pectinesterase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like |
#chains in the Genus database with same CATH superfamily 1O88 A; 2X6W A; 4MR0 A; 3T9G A; 4YZ0 A; 4Z06 A; 1K5C A; 2PEC A; 1RMG A; 4XNF A; 2X6Y A; 4NK6 A; 4C2L A; 2O0V A; 4XQF A; 5AMV A; 1GQ8 A; 1X0C A; 1OGO X; 3WWG A; 3VMV A; 1DBO A; 2UVF A; 4YZA A; 1JRG A; 4Z05 A; 1EE6 A; 2VBM A; 3GQ7 A; 2Z8G A; 2NZM A; 3GQ8 A; 1OGM X; 2NTP A; 2X6X A; 1O8L A; 3ZSC A; 2IQ7 A; 4YZQ A; 4W8Q A; 2NST A; 4URR A; 3FY3 A; 1PXZ A; 1KTW A; 4MXN A; 2NTQ A; 4I84 A; 4PMH A; 3VST A; 1AIR A; 2ODL A; 2VJJ A; 4U4B A; 4XN3 A; 4XKV A; 1OFL A; 4XOR A; 2NTB A; 2QX3 A; 1RU4 A; 4XMY A; 2VBK A; 2VJI A; 2PYH A; 3B90 A; 4OJ5 A; 2PYG A; 4XLF A; 4XLE A; 1QCX A; 5C1E A; 3LMW A; 4EW9 A; 1RWR A; 4W8T A; 4YZX A; 3ZPP A; 2O0W A; 3GQA A; 2UVE A; 1XG2 A; 4HWV A; 2NT6 A; 3GQ9 A; 4XLA A; 2NSP A; 2QXZ A; 4OZZ A; 1OFM A; 1O8E A; 1VBL A; 4XOP A; 3EQN A; 1O8D A; 4W8S A; 1OOC A; 3VSV A; 4XN0 A; 4YEL A; 2EWE A; 4XLH A; 4NK8 A; 2QY1 A; 4XON A; 3KRG A; 4U49 A; 1WMR A; 1H80 A; 3UW0 A; 1O8F A; 1DBG A; 1QJV A; 1PLU A; 3GRH A; 2INU A; 2INV A; 3JUR A; 1O8I A; 1O8H A; 1O8J A; 2O04 A; 1O8G A; 2X85 A; 4OJP A; 4XL9 A; 2VBE A; 1IDJ A; 3SUC A; 4XR6 A; 1CZF A; 1NHC A; 2NT9 A; 1BHE A; 2BSP A; 3B4N A; 4XOT A; 4XM3 A; 1KCC A; 4XKW A; 1KCD A; 2O17 A; 3B8Y A; 1JTA A; 2O1D A; 4XLC A; 4OZY A; 1O8M A; 4Z03 A; 4W8R A; 4YEJ A; 4OJO A; 1PE9 A; 1O8K A; 1BN8 A; 3VSU A; 3VMW A; 5C1C A; 1HG8 A; 1IDK A; 4AVZ A; 4OJ6 A; 1IA5 A; 3EQO A; 2X3H A; 1IB4 A; 4OJL A; #chains in the Genus database with same CATH topology 1TYV A; 1O88 A; 2VFN A; 1QA3 A; 2X6W A; 1WXR A; 4MR0 A; 3PET A; 3T9G A; 4YZ0 A; 2BM6 A; 4Z06 A; 4YDT A; 1K5C A; 2PEC A; 1DAB A; 1RMG A; 4XNF A; 1KQ5 A; 2X6Y A; 3NB2 A; 4NK6 A; 4C2L A; 3LYC A; 2O0V A; 2VFQ A; 4XQF A; 1K4Z A; 1OFD A; 1L1I A; 2J8K A; 5AMV A; 3BH7 B; 4OPW A; 1GQ8 A; 1X0C A; 1OGO X; 2QYU A; 3WWG A; 3NAW A; 3VMV A; 1DBO A; 2UVF A; 4YZA A; 2XT2 A; 1EZG A; 1JRG A; 4Z05 A; 1EA0 A; 1EE6 A; 2VBM A; 3BH6 B; 3GQ7 A; 2Z8G A; 4JRA C; 2NZM A; 4YEI A; 1QQ1 A; 3GQ8 A; 1OGM X; 2NTP A; 2X6X A; 1O8L A; 3ZSC A; 2IQ7 A; 2VFM A; 4YZQ A; 4W8Q A; 2W7Z A; 2NST A; 2J8I A; 3FY3 A; 4URR A; 1PXZ A; 1KTW A; 4MXN A; 3LJY A; 2NTQ A; 4I84 A; 2VFO A; 4PMH A; 3VST A; 3RIQ A; 2B0R A; 2IOU G; 5JLV C; 1AIR A; 1LM1 A; 2ODL A; 2VJJ A; 3PSZ A; 4U4B A; 4XKV A; 1OFL A; 2XTY A; 2NTB A; 4XN3 A; 4XOR A; 5JMC B; 2QX3 A; 1RU4 A; 4XMY A; 2VBK A; 2VJI A; 2VFP A; 1TYX A; 1TYW A; 2PYH A; 3B90 A; 4OJ5 A; 2PYG A; 4XLF A; 4XLE A; 1QCX A; 5C1E A; 2BX6 A; 3LMW A; 1RWR A; 4W8T A; 4EW9 A; 4YZX A; 3ZPP A; 2O0W A; 3SQV A; 1HF2 A; 3DU1 X; 3GQA A; 2UVE A; 1XG2 A; 4HWV A; 2NT6 A; 3GQ9 A; 4XLA A; 2NSP A; 3SZE A; 2XTW A; 1TYU A; 2QXZ A; 4OZZ A; 1OFM A; 1O8E A; 1VBL A; 1LLZ A; 2O6W A; 4XOP A; 2XT4 A; 3EQN A; 1O8D A; 4W8S A; 1OOC A; 3H09 A; 3VSV A; 4XN0 A; 4YEL A; 2EWE A; 4XLH A; 4NK8 A; 2QY1 A; 4XON A; 3KRG A; 3N6Z A; 4U49 A; 3AK5 A; 1WMR A; 1H80 A; 5DNS A; 3UW0 A; 1QA2 A; 2YUH A; 1O8F A; 1DBG A; 1QJV A; 1PLU A; 1LLW A; 3GRH A; 2INU A; 2INV A; 3JUR A; 1O8I A; 1O8H A; 1O8J A; 2O04 A; 1O8G A; 2X85 A; 4OJP A; 4XL9 A; 2VBE A; 2V5I A; 2QZA A; 4V02 C; 1IDJ A; 1TSP A; 3JX8 A; 4YCQ A; 3SUC A; 1OFE A; 2F3L A; 4XR6 A; 1CZF A; 3PSS A; 1NHC A; 2G0Y A; 2NT9 A; 1BHE A; 2BSP A; 3B4N A; 4XOT A; 4XM3 A; 1KCC A; 4XKW A; 1KCD A; 2O17 A; 4OM9 A; 3B8Y A; 1JTA A; 1QRB A; 3N90 A; 2O1D A; 1QRC A; 4OZY A; 4XLC A; 1O8M A; 4Z03 A; 4W8R A; 4YEJ A; 3SY2 A; 3P4G A; 4OJO A; 1PE9 A; 1O8K A; 4YFO A; 2XC1 A; 1BN8 A; 3VSU A; 3VMW A; 5C1C A; 1HG8 A; 1IDK A; 1K8F A; 3TH0 A; 4KH3 A; 2BM7 A; 2BM4 A; 4AVZ A; 4OJ6 A; 1IA5 A; 3EQO A; 4YC5 A; 3ML3 A; 3SYJ A; 2X3H A; 2XTX A; 1IB4 A; 1QA1 A; 1CLW A; 4OJL A; 2BM5 A; #chains in the Genus database with same CATH homology 1O88 A; 2X6W A; 4MR0 A; 3T9G A; 4YZ0 A; 4Z06 A; 1K5C A; 2PEC A; 1RMG A; 4XNF A; 2X6Y A; 4NK6 A; 4C2L A; 2O0V A; 4XQF A; 5AMV A; 1GQ8 A; 1X0C A; 1OGO X; 3WWG A; 3VMV A; 1DBO A; 2UVF A; 4YZA A; 1JRG A; 4Z05 A; 1EE6 A; 2VBM A; 3GQ7 A; 2Z8G A; 2NZM A; 3GQ8 A; 1OGM X; 2NTP A; 2X6X A; 1O8L A; 3ZSC A; 2IQ7 A; 4YZQ A; 4W8Q A; 2NST A; 4URR A; 3FY3 A; 1PXZ A; 1KTW A; 4MXN A; 2NTQ A; 4I84 A; 4PMH A; 3VST A; 1AIR A; 2ODL A; 2VJJ A; 4U4B A; 4XN3 A; 4XKV A; 1OFL A; 4XOR A; 2NTB A; 2QX3 A; 1RU4 A; 4XMY A; 2VBK A; 2VJI A; 2PYH A; 3B90 A; 4OJ5 A; 2PYG A; 4XLF A; 4XLE A; 1QCX A; 5C1E A; 3LMW A; 4EW9 A; 1RWR A; 4W8T A; 4YZX A; 3ZPP A; 2O0W A; 3GQA A; 2UVE A; 1XG2 A; 4HWV A; 2NT6 A; 3GQ9 A; 4XLA A; 2NSP A; 2QXZ A; 4OZZ A; 1OFM A; 1O8E A; 1VBL A; 4XOP A; 3EQN A; 1O8D A; 4W8S A; 1OOC A; 3VSV A; 4XN0 A; 4YEL A; 2EWE A; 4XLH A; 4NK8 A; 2QY1 A; 4XON A; 3KRG A; 4U49 A; 1WMR A; 1H80 A; 3UW0 A; 1O8F A; 1DBG A; 1QJV A; 1PLU A; 3GRH A; 2INU A; 2INV A; 3JUR A; 1O8I A; 1O8H A; 1O8J A; 2O04 A; 1O8G A; 2X85 A; 4OJP A; 4XL9 A; 2VBE A; 1IDJ A; 3SUC A; 4XR6 A; 1CZF A; 1NHC A; 2NT9 A; 1BHE A; 2BSP A; 3B4N A; 4XOT A; 4XM3 A; 1KCC A; 4XKW A; 1KCD A; 2O17 A; 3B8Y A; 1JTA A; 2O1D A; 4XLC A; 4OZY A; 1O8M A; 4Z03 A; 4W8R A; 4YEJ A; 4OJO A; 1PE9 A; 1O8K A; 1BN8 A; 3VSU A; 3VMW A; 5C1C A; 1HG8 A; 1IDK A; 4AVZ A; 4OJ6 A; 1IA5 A; 3EQO A; 2X3H A; 1IB4 A; 4OJL A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
