3JX8A

Crystal structure of putative lipid binding protein (yp_001304415.1) from parabacteroides distasonis atcc 8503 at 2.16 a resolution
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
247
structure length
247
Chain Sequence
DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (25-27)S5 (63-69)S2 (32-37)S7 (84-89)TVIII1 (105-108)S6 (76-81)3H1 (73-75)TI1 (69-72)TIV1 (80-83)TII1 (92-95)S10 (119-124)TI'2 (95-98)S9 (108-114)S12 (134-136)S11 (127-130)S14 (148-151)S15 (155-162)S13 (141-145)S16 (169-172)TIV2 (172-175)S19 (194-204)S17 (175-182)EMPTYS18 (189-191)S20 (208-210)TI3 (211-214)S21 (214-225)S22 (228-243)S4 (52-57)S3 (44-48)S8 (102-104)Updating...
connected with : NaN
molecule tags Cell adhesion
source organism Parabacteroides distasonis atcc 8503
publication title Crystal structure of Putative lipid binding protein (YP_001304415.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution
rcsb
molecule keywords Putative lipoprotein
total genus 88
structure length 247
sequence length 247
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2009-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10988 DUF2807 Putative auto-transporter adhesin, head GIN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.120 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3jx8A00
3LJYA 3LYCA 4OPWA 3JX8A 3PETA
chains in the Genus database with same CATH superfamily
1EZGA 1XG2A 3SQVA 1EA0A 5C1EA 3KRGA 3PSZA 4XONA 4YZAA 1IB4A 4HWVA 1OGOX 4OPWA 2NTBA 3BH7B 2QX3A 1QA2A 1CLWA 4AVZA 3VMWA 2O17A 1KTWA 2EWEA 1O8JA 4OJPA 1OFMA 4XM3A 2INUA 2VFPA 2O0VA 2VFQA 2G0YA 2ODLA 2VBEA 4XKVA 1O8DA 4YCQA 1DBOA 2VFOA 2XTXA 1IDKA 1BHEA 2F3LA 3DU1X 3GRHA 3VSVA 2XT2A 2O1DA 2UVEA 1OGMX 1QCXA 1O8MA 2BM6A 3FY3A 2BSPA 1PXZA 2IOUG 2QXZA 2VBMA 4XR6A 1O8KA 1IA5A 3VSTA 2X85A 1K4ZA 2PYGA 4Z05A 2Z8GA 1OFLA 3GQ7A 1QRBA 4MXNA 4YC5A 1QA3A 4OZYA 4YZ0A 1EE6A 1RU4A 4URRA 4W8TA 1TYWA 3B8YA 3GQ9A 2O04A 2IQ7A 1TYUA 1QA1A 1O88A 2J8IA 1IDJA 2NSTA 3RIQA 2XTYA 2O6WA 1X0CA 1K5CA 1KCCA 4V02C 1PLUA 2NT6A 3B4NA 4XMYA 3SY2A 4YEJA 2W7ZA 4XN3A 4W8SA 2VBKA 1WMRA 1OFEA 2INVA 3N90A 5DNSA 4I84A 4JRAC 3TH0A 4XQFA 4KH3A 1O8IA 4XLEA 4YDTA 4XN0A 2NTPA 5JMCB 2BX6A 1RWRA 3GQAA 3N6ZA 3LYCA 5JLVC 2O0WA 3NAWA 1KQ5A 1WXRA 2QYUA 1O8HA 4OJOA 4YZXA 2NZMA 4U49A 1PE9A 3LJYA 4NK8A 1QRCA 1TYXA 2B0RA 4XKWA 2X6XA 2X3HA 2J8KA 2BM4A 2QZAA 3BH6B 3EQOA 1L1IA 1OOCA 1LLWA 1JTAA 4W8RA 1AIRA 1VBLA 4OJ6A 1QJVA 1HG8A 4C2LA 3SZEA 4OJLA 3EQNA 1RMGA 2VFMA 2PYHA 3JX8A 1O8LA 4MR0A 1CZFA 3SUCA 3VMVA 3WWGA 4XL9A 3AK5A 2NTQA 3ZPPA 1O8FA 2XT4A 4YEIA 4U4BA 4XLCA 4XNFA 1BN8A 4XORA 3VSUA 1O8EA 4EW9A 3PSSA 4NK6A 3T9GA 2UVFA 1O8GA 4OZZA 4XOTA 1KCDA 5AMVA 1H80A 4OJ5A 3LMWA 2NSPA 1QQ1A 4XOPA 2BM5A 4Z03A 3B90A 4PMHA 3PETA 1DABA 1TYVA 2XTWA 4YELA 1HF2A 2NT9A 3SYJA 3UW0A 1LM1A 1NHCA 4OM9A 4Z06A 1DBGA 3GQ8A 4XLHA 2VJJA 1LLZA 4XLFA 2VFNA 4YFOA 2V5IA 2BM7A 2X6WA 2XC1A 5C1CA 1GQ8A 2VJIA 1OFDA 3P4GA 4YZQA 2QY1A 2X6YA 1JRGA 1K8FA 3H09A 3JURA 3NB2A 4W8QA 2PECA 1TSPA 3ZSCA 4XLAA 2YUHA 3ML3A
chains in the Genus database with same CATH topology
3LJYA 1QRCA 1TYXA 2B0RA 4OJ5A 1QA3A 1TYWA 2BM4A 4OPWA 1QQ1A 2BM5A 1TYUA 3BH7B 3BH6B 1QA1A 1QA2A 2J8IA 1CLWA 1DABA 3PETA 1TYVA 3RIQA 1HF2A 3SYJA 4OJ6A 4OJPA 4OM9A 4V02C 3SZEA 2VFPA 4OJLA 2VFQA 2VFMA 2G0YA 2W7ZA 3JX8A 2VFOA 2VFNA 2F3LA 2V5IA 2BM7A 2XC1A 3N90A 4JRAC 3AK5A 3TH0A 3P4GA 2BM6A 4KH3A 3ML3A 2IOUG 1K8FA 3H09A 2BX6A 3N6ZA 5JLVC 5JMCB 3LYCA 1K4ZA 1KQ5A 1TSPA 1WXRA 4OJOA 2YUHA 1QRBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LJY A;  3LYC A;  4OPW A;  3JX8 A;  3PET A; 
#chains in the Genus database with same CATH topology
 1EZG A;  1XG2 A;  3SQV A;  1EA0 A;  5C1E A;  3KRG A;  3PSZ A;  4XON A;  4YZA A;  1IB4 A;  4HWV A;  1OGO X;  4OPW A;  2NTB A;  3BH7 B;  2QX3 A;  1QA2 A;  1CLW A;  4AVZ A;  3VMW A;  2O17 A;  1KTW A;  2EWE A;  1O8J A;  4OJP A;  1OFM A;  4XM3 A;  2INU A;  2VFP A;  2O0V A;  2VFQ A;  2G0Y A;  2ODL A;  2VBE A;  4XKV A;  1O8D A;  4YCQ A;  1DBO A;  2VFO A;  2XTX A;  1IDK A;  1BHE A;  2F3L A;  3DU1 X;  3GRH A;  3VSV A;  2XT2 A;  2O1D A;  2UVE A;  1OGM X;  1QCX A;  1O8M A;  2BM6 A;  3FY3 A;  2BSP A;  1PXZ A;  2IOU G;  2QXZ A;  2VBM A;  4XR6 A;  1O8K A;  1IA5 A;  3VST A;  2X85 A;  1K4Z A;  2PYG A;  4Z05 A;  2Z8G A;  1OFL A;  3GQ7 A;  1QRB A;  4MXN A;  4YC5 A;  1QA3 A;  4OZY A;  4YZ0 A;  1EE6 A;  1RU4 A;  4URR A;  4W8T A;  1TYW A;  3B8Y A;  3GQ9 A;  2O04 A;  2IQ7 A;  1TYU A;  1QA1 A;  1O88 A;  2J8I A;  1IDJ A;  2NST A;  3RIQ A;  2XTY A;  2O6W A;  1X0C A;  1K5C A;  1KCC A;  4V02 C;  1PLU A;  2NT6 A;  3B4N A;  4XMY A;  3SY2 A;  4YEJ A;  2W7Z A;  4XN3 A;  4W8S A;  2VBK A;  1WMR A;  1OFE A;  2INV A;  3N90 A;  5DNS A;  4I84 A;  4JRA C;  3TH0 A;  4XQF A;  4KH3 A;  1O8I A;  4XLE A;  4YDT A;  4XN0 A;  2NTP A;  5JMC B;  2BX6 A;  1RWR A;  3GQA A;  3N6Z A;  3LYC A;  5JLV C;  2O0W A;  3NAW A;  1KQ5 A;  1WXR A;  2QYU A;  1O8H A;  4OJO A;  4YZX A;  2NZM A;  4U49 A;  1PE9 A;  3LJY A;  4NK8 A;  1QRC A;  1TYX A;  2B0R A;  4XKW A;  2X6X A;  2X3H A;  2J8K A;  2BM4 A;  2QZA A;  3BH6 B;  3EQO A;  1L1I A;  1OOC A;  1LLW A;  1JTA A;  4W8R A;  1AIR A;  1VBL A;  4OJ6 A;  1QJV A;  1HG8 A;  4C2L A;  3SZE A;  4OJL A;  3EQN A;  1RMG A;  2VFM A;  2PYH A;  3JX8 A;  1O8L A;  4MR0 A;  1CZF A;  3SUC A;  3VMV A;  3WWG A;  4XL9 A;  3AK5 A;  2NTQ A;  3ZPP A;  1O8F A;  2XT4 A;  4YEI A;  4U4B A;  4XLC A;  4XNF A;  1BN8 A;  4XOR A;  3VSU A;  1O8E A;  4EW9 A;  3PSS A;  4NK6 A;  3T9G A;  2UVF A;  1O8G A;  4OZZ A;  4XOT A;  1KCD A;  5AMV A;  1H80 A;  4OJ5 A;  3LMW A;  2NSP A;  1QQ1 A;  4XOP A;  2BM5 A;  4Z03 A;  3B90 A;  4PMH A;  3PET A;  1DAB A;  1TYV A;  2XTW A;  4YEL A;  1HF2 A;  2NT9 A;  3SYJ A;  3UW0 A;  1LM1 A;  1NHC A;  4OM9 A;  4Z06 A;  1DBG A;  3GQ8 A;  4XLH A;  2VJJ A;  1LLZ A;  4XLF A;  2VFN A;  4YFO A;  2V5I A;  2BM7 A;  2X6W A;  2XC1 A;  5C1C A;  1GQ8 A;  2VJI A;  1OFD A;  3P4G A;  4YZQ A;  2QY1 A;  2X6Y A;  1JRG A;  1K8F A;  3H09 A;  3JUR A;  3NB2 A;  4W8Q A;  2PEC A;  1TSP A;  3ZSC A;  4XLA A;  2YUH A;  3ML3 A; 
#chains in the Genus database with same CATH homology
 3LJY A;  1QRC A;  1TYX A;  2B0R A;  4OJ5 A;  1QA3 A;  1TYW A;  2BM4 A;  4OPW A;  1QQ1 A;  2BM5 A;  1TYU A;  3BH7 B;  3BH6 B;  1QA1 A;  1QA2 A;  2J8I A;  1CLW A;  1DAB A;  3PET A;  1TYV A;  3RIQ A;  1HF2 A;  3SYJ A;  4OJ6 A;  4OJP A;  4OM9 A;  4V02 C;  3SZE A;  2VFP A;  4OJL A;  2VFQ A;  2VFM A;  2G0Y A;  2W7Z A;  3JX8 A;  2VFO A;  2VFN A;  2F3L A;  2V5I A;  2BM7 A;  2XC1 A;  3N90 A;  4JRA C;  3AK5 A;  3TH0 A;  3P4G A;  2BM6 A;  4KH3 A;  3ML3 A;  2IOU G;  1K8F A;  3H09 A;  2BX6 A;  3N6Z A;  5JLV C;  5JMC B;  3LYC A;  1K4Z A;  1KQ5 A;  1TSP A;  1WXR A;  4OJO A;  2YUH A;  1QRB A; 
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similar chains in the pdb database (?% sequence similarity)

 
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