3KRGA

Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Total Genus 153
50100150200250300350020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Bacillus subtilis
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2009-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3krgA00
2NTPA 1KCCA 1K5CA 3EQOA 3VMWA 4OJ6A 4XKVA 1X0CA 1NHCA 4YZXA 1O88A 4Z03A 4YZQA 1IB4A 4XOPA 3ZSCA 1IDJA 2QXZA 4I84A 4OJ5A 2VBMA 4XLHA 1QCXA 1HG8A 4W8QA 2IQ7A 4XLAA 2NSTA 4C2LA 4XLEA 1RMGA 1BN8A 2QY1A 3LMWA 4XONA 3T9GA 1KCDA 1KTWA 2O04A 2O0WA 4HWVA 2NTQA 4YEJA 2O0VA 1GQ8A 5C1EA 2X85A 1DBGA 1IA5A 2NTBA 3GRHA 3B8YA 5AMVA 2PYHA 4W8RA 3VSUA 4XR6A 1OOCA 2NT9A 1O8DA 1PLUA 2VBKA 2X3HA 1RWRA 1VBLA 2PYGA 4XMYA 4XQFA 2INVA 1JTAA 3VSTA 2NSPA 1DBOA 1IDKA 4YELA 4MXNA 4Z05A 1O8IA 1JRGA 1CZFA 2X6WA 1PXZA 3B4NA 3ZPPA 4XNFA 2VJJA 1RU4A 2UVFA 3GQ8A 4NK8A 2O1DA 3GQ9A 3B90A 4U49A 1O8JA 2BSPA 4MR0A 1O8HA 2INUA 2NZMA 4XN3A 2PECA 4EW9A 1O8MA 3JURA 2NT6A 4XORA 1AIRA 1BHEA 3EQNA 4XN0A 3VMVA 1OFLA 2UVEA 4XLFA 2VBEA 4PMHA 2X6XA 1O8GA 4XL9A 4OJOA 1O8FA 4NK6A 2EWEA 4W8SA 1QJVA 4OZYA 3VSVA 3KRGA 1O8LA 2O17A 2ODLA 3FY3A 1OGMX 3WWGA 4YZ0A 4XOTA 4OZZA 4OJLA 1O8KA 1OGOX 4OJPA 3UW0A 2X6YA 4U4BA 4AVZA 4Z06A 3GQAA 1O8EA 1XG2A 3SUCA 4YZAA 1OFMA 4W8TA 2QX3A 4XKWA 1EE6A 1H80A 1WMRA 4URRA 2VJIA 2Z8GA 3GQ7A 4XM3A 5C1CA 4XLCA 1PE9A
chains in the Genus database with same CATH superfamily
2NTPA 1KQ5A 1KCCA 1K5CA 2VFOA 3EQOA 3VMWA 4OJ6A 4XKVA 1X0CA 1NHCA 4OPWA 1QQ1A 4YZXA 1O88A 4Z03A 4YZQA 1IB4A 2G0YA 4XOPA 3ZSCA 2QYUA 1IDJA 2QXZA 3PETA 1TYVA 4I84A 3AK5A 4OJ5A 2VBMA 2XTYA 4XLHA 2O6WA 1QCXA 1HG8A 4W8QA 2IQ7A 4XLAA 2NSTA 2IOUG 3P4GA 4YC5A 3SQVA 4XLEA 4C2LA 1RMGA 1BN8A 2QY1A 3LMWA 2BM6A 4XONA 4YCQA 3T9GA 1KTWA 2O04A 2XC1A 1KCDA 2O0WA 4HWVA 2NTQA 4YEJA 1GQ8A 2O0VA 5C1EA 2X85A 4YEIA 1DBGA 2QZAA 1EZGA 1IA5A 2NTBA 3GRHA 3B8YA 2VFMA 2XTWA 2PYHA 5AMVA 4W8RA 2VFQA 3VSUA 2BM7A 1EA0A 4XR6A 1OOCA 3BH6B 2F3LA 1LLZA 2NT9A 2J8IA 1O8DA 1PLUA 2VBKA 2X3HA 1RWRA 1VBLA 2PYGA 4XMYA 4XQFA 2INVA 1JTAA 3ML3A 3PSZA 5JLVC 3VSTA 1HF2A 2XTXA 3SYJA 2NSPA 1DBOA 1IDKA 2YUHA 4YELA 2J8KA 4MXNA 4Z05A 1QA3A 1O8IA 1JRGA 3RIQA 1CZFA 2X6WA 2BM5A 1PXZA 2BM4A 1QRBA 3B4NA 3ZPPA 2W7ZA 3TH0A 4XNFA 2VJJA 1DABA 1RU4A 2UVFA 3GQ8A 3DU1X 1K8FA 4NK8A 2O1DA 3GQ9A 1WXRA 3BH7B 3B90A 5DNSA 4U49A 2VFPA 4OM9A 1O8JA 1QRCA 2BSPA 1OFDA 4MR0A 1O8HA 2INUA 2NZMA 3JX8A 2PECA 4XN3A 1O8MA 2BX6A 2NT6A 3JURA 4XORA 4EW9A 1AIRA 1BHEA 1TSPA 4JRAC 3EQNA 2B0RA 4XN0A 3VMVA 1TYWA 3N6ZA 1OFLA 2UVEA 4XLFA 4YDTA 2VBEA 4PMHA 2X6XA 2VFNA 1O8GA 4XL9A 3SZEA 1OFEA 4OJOA 1O8FA 1TYXA 3H09A 4NK6A 2EWEA 4V02C 4W8SA 1QJVA 4OZYA 1L1IA 3LYCA 3VSVA 1LLWA 3KRGA 3SY2A 1O8LA 2O17A 2ODLA 3FY3A 1K4ZA 3PSSA 1OGMX 3WWGA 4YZ0A 4XOTA 4OZZA 4OJLA 1O8KA 1OGOX 2XT2A 4OJPA 2X6YA 4U4BA 3UW0A 2V5IA 3N90A 4AVZA 4Z06A 3GQAA 1O8EA 3NB2A 1XG2A 2XT4A 3NAWA 4YFOA 3SUCA 4YZAA 1CLWA 1QA1A 1OFMA 4W8TA 2QX3A 4XKWA 1EE6A 1H80A 1WMRA 4URRA 1QA2A 2VJIA 1TYUA 4KH3A 1LM1A 2Z8GA 3GQ7A 4XM3A 5JMCB 5C1CA 4XLCA 3LJYA 1PE9A
chains in the Genus database with same CATH topology
2NTPA 1KCCA 1K5CA 3EQOA 3VMWA 4OJ6A 4XKVA 1X0CA 1NHCA 4YZXA 1O88A 4Z03A 4YZQA 1IB4A 4XOPA 3ZSCA 1IDJA 2QXZA 4I84A 4OJ5A 2VBMA 4XLHA 1QCXA 1HG8A 4W8QA 2IQ7A 4XLAA 2NSTA 4C2LA 4XLEA 1RMGA 1BN8A 2QY1A 3LMWA 4XONA 3T9GA 1KCDA 1KTWA 2O04A 2O0WA 4HWVA 2NTQA 4YEJA 2O0VA 1GQ8A 5C1EA 2X85A 1DBGA 1IA5A 2NTBA 3GRHA 3B8YA 5AMVA 2PYHA 4W8RA 3VSUA 4XR6A 1OOCA 2NT9A 1O8DA 1PLUA 2VBKA 2X3HA 1RWRA 1VBLA 2PYGA 4XMYA 4XQFA 2INVA 1JTAA 3VSTA 2NSPA 1DBOA 1IDKA 4YELA 4MXNA 4Z05A 1O8IA 1JRGA 1CZFA 2X6WA 1PXZA 3B4NA 3ZPPA 4XNFA 2VJJA 1RU4A 2UVFA 3GQ8A 4NK8A 2O1DA 3GQ9A 3B90A 4U49A 1O8JA 2BSPA 4MR0A 1O8HA 2INUA 2NZMA 4XN3A 2PECA 4EW9A 1O8MA 3JURA 2NT6A 4XORA 1AIRA 1BHEA 3EQNA 4XN0A 3VMVA 1OFLA 2UVEA 4XLFA 2VBEA 4PMHA 2X6XA 1O8GA 4XL9A 4OJOA 1O8FA 4NK6A 2EWEA 4W8SA 1QJVA 4OZYA 3VSVA 3KRGA 1O8LA 2O17A 2ODLA 3FY3A 1OGMX 3WWGA 4YZ0A 4XOTA 4OZZA 4OJLA 1O8KA 1OGOX 4OJPA 3UW0A 2X6YA 4U4BA 4AVZA 4Z06A 3GQAA 1O8EA 1XG2A 3SUCA 4YZAA 1OFMA 4W8TA 2QX3A 4XKWA 1EE6A 1H80A 1WMRA 4URRA 2VJIA 2Z8GA 3GQ7A 4XM3A 5C1CA 4XLCA 1PE9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NTP A;  1KCC A;  1K5C A;  3EQO A;  3VMW A;  4OJ6 A;  4XKV A;  1X0C A;  1NHC A;  4YZX A;  1O88 A;  4Z03 A;  4YZQ A;  1IB4 A;  4XOP A;  3ZSC A;  1IDJ A;  2QXZ A;  4I84 A;  4OJ5 A;  2VBM A;  4XLH A;  1QCX A;  1HG8 A;  4W8Q A;  2IQ7 A;  4XLA A;  2NST A;  4C2L A;  4XLE A;  1RMG A;  1BN8 A;  2QY1 A;  3LMW A;  4XON A;  3T9G A;  1KCD A;  1KTW A;  2O04 A;  2O0W A;  4HWV A;  2NTQ A;  4YEJ A;  2O0V A;  1GQ8 A;  5C1E A;  2X85 A;  1DBG A;  1IA5 A;  2NTB A;  3GRH A;  3B8Y A;  5AMV A;  2PYH A;  4W8R A;  3VSU A;  4XR6 A;  1OOC A;  2NT9 A;  1O8D A;  1PLU A;  2VBK A;  2X3H A;  1RWR A;  1VBL A;  2PYG A;  4XMY A;  4XQF A;  2INV A;  1JTA A;  3VST A;  2NSP A;  1DBO A;  1IDK A;  4YEL A;  4MXN A;  4Z05 A;  1O8I A;  1JRG A;  1CZF A;  2X6W A;  1PXZ A;  3B4N A;  3ZPP A;  4XNF A;  2VJJ A;  1RU4 A;  2UVF A;  3GQ8 A;  4NK8 A;  2O1D A;  3GQ9 A;  3B90 A;  4U49 A;  1O8J A;  2BSP A;  4MR0 A;  1O8H A;  2INU A;  2NZM A;  4XN3 A;  2PEC A;  4EW9 A;  1O8M A;  3JUR A;  2NT6 A;  4XOR A;  1AIR A;  1BHE A;  3EQN A;  4XN0 A;  3VMV A;  1OFL A;  2UVE A;  4XLF A;  2VBE A;  4PMH A;  2X6X A;  1O8G A;  4XL9 A;  4OJO A;  1O8F A;  4NK6 A;  2EWE A;  4W8S A;  1QJV A;  4OZY A;  3VSV A;  3KRG A;  1O8L A;  2O17 A;  2ODL A;  3FY3 A;  1OGM X;  3WWG A;  4YZ0 A;  4XOT A;  4OZZ A;  4OJL A;  1O8K A;  1OGO X;  4OJP A;  3UW0 A;  2X6Y A;  4U4B A;  4AVZ A;  4Z06 A;  3GQA A;  1O8E A;  1XG2 A;  3SUC A;  4YZA A;  1OFM A;  4W8T A;  2QX3 A;  4XKW A;  1EE6 A;  1H80 A;  1WMR A;  4URR A;  2VJI A;  2Z8G A;  3GQ7 A;  4XM3 A;  5C1C A;  4XLC A;  1PE9 A; 
#chains in the Genus database with same CATH topology
 2NTP A;  1KQ5 A;  1KCC A;  1K5C A;  2VFO A;  3EQO A;  3VMW A;  4OJ6 A;  4XKV A;  1X0C A;  1NHC A;  4OPW A;  1QQ1 A;  4YZX A;  1O88 A;  4Z03 A;  4YZQ A;  1IB4 A;  2G0Y A;  4XOP A;  3ZSC A;  2QYU A;  1IDJ A;  2QXZ A;  3PET A;  1TYV A;  4I84 A;  3AK5 A;  4OJ5 A;  2VBM A;  2XTY A;  4XLH A;  2O6W A;  1QCX A;  1HG8 A;  4W8Q A;  2IQ7 A;  4XLA A;  2NST A;  2IOU G;  3P4G A;  4YC5 A;  3SQV A;  4XLE A;  4C2L A;  1RMG A;  1BN8 A;  2QY1 A;  3LMW A;  2BM6 A;  4XON A;  4YCQ A;  3T9G A;  1KTW A;  2O04 A;  2XC1 A;  1KCD A;  2O0W A;  4HWV A;  2NTQ A;  4YEJ A;  1GQ8 A;  2O0V A;  5C1E A;  2X85 A;  4YEI A;  1DBG A;  2QZA A;  1EZG A;  1IA5 A;  2NTB A;  3GRH A;  3B8Y A;  2VFM A;  2XTW A;  2PYH A;  5AMV A;  4W8R A;  2VFQ A;  3VSU A;  2BM7 A;  1EA0 A;  4XR6 A;  1OOC A;  3BH6 B;  2F3L A;  1LLZ A;  2NT9 A;  2J8I A;  1O8D A;  1PLU A;  2VBK A;  2X3H A;  1RWR A;  1VBL A;  2PYG A;  4XMY A;  4XQF A;  2INV A;  1JTA A;  3ML3 A;  3PSZ A;  5JLV C;  3VST A;  1HF2 A;  2XTX A;  3SYJ A;  2NSP A;  1DBO A;  1IDK A;  2YUH A;  4YEL A;  2J8K A;  4MXN A;  4Z05 A;  1QA3 A;  1O8I A;  1JRG A;  3RIQ A;  1CZF A;  2X6W A;  2BM5 A;  1PXZ A;  2BM4 A;  1QRB A;  3B4N A;  3ZPP A;  2W7Z A;  3TH0 A;  4XNF A;  2VJJ A;  1DAB A;  1RU4 A;  2UVF A;  3GQ8 A;  3DU1 X;  1K8F A;  4NK8 A;  2O1D A;  3GQ9 A;  1WXR A;  3BH7 B;  3B90 A;  5DNS A;  4U49 A;  2VFP A;  4OM9 A;  1O8J A;  1QRC A;  2BSP A;  1OFD A;  4MR0 A;  1O8H A;  2INU A;  2NZM A;  3JX8 A;  2PEC A;  4XN3 A;  1O8M A;  2BX6 A;  2NT6 A;  3JUR A;  4XOR A;  4EW9 A;  1AIR A;  1BHE A;  1TSP A;  4JRA C;  3EQN A;  2B0R A;  4XN0 A;  3VMV A;  1TYW A;  3N6Z A;  1OFL A;  2UVE A;  4XLF A;  4YDT A;  2VBE A;  4PMH A;  2X6X A;  2VFN A;  1O8G A;  4XL9 A;  3SZE A;  1OFE A;  4OJO A;  1O8F A;  1TYX A;  3H09 A;  4NK6 A;  2EWE A;  4V02 C;  4W8S A;  1QJV A;  4OZY A;  1L1I A;  3LYC A;  3VSV A;  1LLW A;  3KRG A;  3SY2 A;  1O8L A;  2O17 A;  2ODL A;  3FY3 A;  1K4Z A;  3PSS A;  1OGM X;  3WWG A;  4YZ0 A;  4XOT A;  4OZZ A;  4OJL A;  1O8K A;  1OGO X;  2XT2 A;  4OJP A;  2X6Y A;  4U4B A;  3UW0 A;  2V5I A;  3N90 A;  4AVZ A;  4Z06 A;  3GQA A;  1O8E A;  3NB2 A;  1XG2 A;  2XT4 A;  3NAW A;  4YFO A;  3SUC A;  4YZA A;  1CLW A;  1QA1 A;  1OFM A;  4W8T A;  2QX3 A;  4XKW A;  1EE6 A;  1H80 A;  1WMR A;  4URR A;  1QA2 A;  2VJI A;  1TYU A;  4KH3 A;  1LM1 A;  2Z8G A;  3GQ7 A;  4XM3 A;  5JMC B;  5C1C A;  4XLC A;  3LJY A;  1PE9 A; 
#chains in the Genus database with same CATH homology
 2NTP A;  1KCC A;  1K5C A;  3EQO A;  3VMW A;  4OJ6 A;  4XKV A;  1X0C A;  1NHC A;  4YZX A;  1O88 A;  4Z03 A;  4YZQ A;  1IB4 A;  4XOP A;  3ZSC A;  1IDJ A;  2QXZ A;  4I84 A;  4OJ5 A;  2VBM A;  4XLH A;  1QCX A;  1HG8 A;  4W8Q A;  2IQ7 A;  4XLA A;  2NST A;  4C2L A;  4XLE A;  1RMG A;  1BN8 A;  2QY1 A;  3LMW A;  4XON A;  3T9G A;  1KCD A;  1KTW A;  2O04 A;  2O0W A;  4HWV A;  2NTQ A;  4YEJ A;  2O0V A;  1GQ8 A;  5C1E A;  2X85 A;  1DBG A;  1IA5 A;  2NTB A;  3GRH A;  3B8Y A;  5AMV A;  2PYH A;  4W8R A;  3VSU A;  4XR6 A;  1OOC A;  2NT9 A;  1O8D A;  1PLU A;  2VBK A;  2X3H A;  1RWR A;  1VBL A;  2PYG A;  4XMY A;  4XQF A;  2INV A;  1JTA A;  3VST A;  2NSP A;  1DBO A;  1IDK A;  4YEL A;  4MXN A;  4Z05 A;  1O8I A;  1JRG A;  1CZF A;  2X6W A;  1PXZ A;  3B4N A;  3ZPP A;  4XNF A;  2VJJ A;  1RU4 A;  2UVF A;  3GQ8 A;  4NK8 A;  2O1D A;  3GQ9 A;  3B90 A;  4U49 A;  1O8J A;  2BSP A;  4MR0 A;  1O8H A;  2INU A;  2NZM A;  4XN3 A;  2PEC A;  4EW9 A;  1O8M A;  3JUR A;  2NT6 A;  4XOR A;  1AIR A;  1BHE A;  3EQN A;  4XN0 A;  3VMV A;  1OFL A;  2UVE A;  4XLF A;  2VBE A;  4PMH A;  2X6X A;  1O8G A;  4XL9 A;  4OJO A;  1O8F A;  4NK6 A;  2EWE A;  4W8S A;  1QJV A;  4OZY A;  3VSV A;  3KRG A;  1O8L A;  2O17 A;  2ODL A;  3FY3 A;  1OGM X;  3WWG A;  4YZ0 A;  4XOT A;  4OZZ A;  4OJL A;  1O8K A;  1OGO X;  4OJP A;  3UW0 A;  2X6Y A;  4U4B A;  4AVZ A;  4Z06 A;  3GQA A;  1O8E A;  1XG2 A;  3SUC A;  4YZA A;  1OFM A;  4W8T A;  2QX3 A;  4XKW A;  1EE6 A;  1H80 A;  1WMR A;  4URR A;  2VJI A;  2Z8G A;  3GQ7 A;  4XM3 A;  5C1C A;  4XLC A;  1PE9 A; 
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