3LMW | Genus

Total Genus 160

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	160
sequence length	472
structure length	472
Chain Sequence	VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYARGNGGTRWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWERLEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Alteromonas
publication title	Identification of catalytic residues and mechanistic analysis of family GH82 iota-carrageenases pubmed doi rcsb
molecule keywords	Iota-carrageenase, CgiA
total genus	160
structure length	472
sequence length	472
chains with identical sequence	B
ec nomenclature	ec 3.2.1.157: Iota-carrageenase.
pdb deposition date	2010-02-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12708	Pectate_lyase_3	Pectate lyase superfamily protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	3lmwA01

2O0WA 2QY1A 4XOTA 2O1DA 1KTWA 2NTPA 4XKVA 2INUA 1DBGA 2NSTA 1O88A 2VBKA 1PLUA 4XLFA 1BHEA 4XM3A 4XOPA 1OOCA 1GQ8A 1IDKA 4HWVA 4XR6A 4YZQA 4XLEA 4MXNA 4OZYA 3EQOA 4XLCA 1O8LA 1EE6A 3VSVA 1OFLA 2IQ7A 2VJJA 1CZFA 2VBMA 3KRGA 2NZMA 3LMWA 4AVZA 4URRA 1O8KA 4XN3A 4YEJA 5C1CA 2NTBA 1X0CA 2PECA 1PE9A 2X6XA 1OGOX 1AIRA 4OJ6A 1KCCA 1PXZA 4Z03A 3WWGA 3UW0A 4EW9A 2X6YA 2O0VA 1IA5A 4NK8A 4XKWA 2ODLA 1VBLA 1QJVA 2EWEA 4XONA 1NHCA 2BSPA 2NT6A 4U4BA 4Z05A 4OJPA 3T9GA 4U49A 1HG8A 3ZSCA 1RMGA 4W8RA 2O04A 3VSTA 4W8TA 4C2LA 1OFMA 3VMWA 2UVEA 4MR0A 1RU4A 1O8HA 3GQ7A 4OJOA 2VJIA 4W8QA 4XL9A 1RWRA 3GQAA 1WMRA 1O8GA 1OGMX 2NSPA 1O8IA 4XORA 4OZZA 3EQNA 4XMYA 3GRHA 2UVFA 4YZ0A 1BN8A 4YELA 1K5CA 4NK6A 5AMVA 3SUCA 4Z06A 4XQFA 1QCXA 3B90A 2X3HA 2Z8GA 4XLHA 2NT9A 4XNFA 2O17A 4W8SA 3ZPPA 1XG2A 2PYGA 1JTAA 3GQ8A 2QX3A 1IB4A 4OJ5A 1JRGA 4PMHA 2PYHA 3B8YA 4I84A 1O8FA 1DBOA 3B4NA 1IDJA 3FY3A 2X6WA 2X85A 1H80A 2INVA 3GQ9A 1O8EA 2NTQA 4YZXA 3JURA 2QXZA 4XN0A 3VSUA 1KCDA 4YZAA 1O8MA 1O8JA 1O8DA 4OJLA 2VBEA 4XLAA 3VMVA 5C1EA
chains in the Genus database with same CATH superfamily

2O0WA 2QY1A 2XC1A 4XOTA 2O1DA 1KTWA 3NB2A 2NTPA 3PSSA 2INUA 1DBGA 2NSTA 4XKVA 1O88A 1OFEA 2VBKA 2VFMA 1QA2A 1EA0A 1PLUA 2XT2A 4XLFA 1BHEA 2J8KA 2V5IA 4XM3A 4XOPA 3SY2A 2BX6A 1OOCA 1GQ8A 1IDKA 4HWVA 4OM9A 4XR6A 4YZQA 5DNSA 1L1IA 4XLEA 4JRAC 4MXNA 4OZYA 3EQOA 4XLCA 1O8LA 2BM5A 1EE6A 3VSVA 1WXRA 3JX8A 1OFLA 2IQ7A 2VJJA 1CZFA 4YFOA 2VBMA 2VFNA 2XT4A 3KRGA 2NZMA 3LMWA 3DU1X 1HF2A 4AVZA 2O6WA 1O8KA 4URRA 4XN3A 4YEJA 5C1CA 1CLWA 2NTBA 1X0CA 5JLVC 1TSPA 2PECA 1PE9A 2X6XA 1OGOX 1AIRA 4OJ6A 4V02C 1KCCA 1PXZA 4Z03A 2BM6A 3WWGA 2B0RA 3UW0A 4EW9A 2X6YA 1LM1A 3RIQA 1OFDA 3BH7B 3P4GA 1QQ1A 1TYVA 2O0VA 1IA5A 4NK8A 4XKWA 2F3LA 2ODLA 1VBLA 1QJVA 2EWEA 4XONA 1QRBA 1K8FA 2BSPA 3LJYA 1NHCA 1LLWA 2NT6A 3H09A 4U4BA 4Z05A 4OJPA 3T9GA 3ML3A 3LYCA 2QZAA 3BH6B 1DABA 4U49A 1HG8A 2W7ZA 1QA1A 3ZSCA 1RMGA 4W8RA 2O04A 2YUHA 2G0YA 3VSTA 4W8TA 4C2LA 1OFMA 3TH0A 1TYWA 3VMWA 2UVEA 4MR0A 1RU4A 1O8HA 3GQ7A 4OJOA 2VJIA 4W8QA 4YDTA 4XL9A 1RWRA 1QRCA 1WMRA 3GQAA 4YC5A 1O8GA 4YEIA 1OGMX 2NSPA 2VFOA 1O8IA 2BM7A 4OZZA 3EQNA 2J8IA 3GRHA 2XTWA 4XMYA 1LLZA 2UVFA 4XORA 4YCQA 3SYJA 4YZ0A 1BN8A 1EZGA 2BM4A 4NK6A 4YELA 1K5CA 5AMVA 3SUCA 4Z06A 4XQFA 1QCXA 3B90A 2IOUG 2X3HA 2Z8GA 4XLHA 2NT9A 2VFPA 2O17A 4XNFA 4W8SA 1QA3A 3ZPPA 3AK5A 1XG2A 1JTAA 2PYGA 3GQ8A 3N90A 4KH3A 2QX3A 2VFQA 2XTXA 1IB4A 4OJ5A 1JRGA 3PSZA 4PMHA 2PYHA 3B8YA 4I84A 1O8FA 1DBOA 3B4NA 1IDJA 2QYUA 3FY3A 3SZEA 1K4ZA 2X6WA 2X85A 1H80A 2INVA 3NAWA 3GQ9A 1O8EA 2NTQA 4YZXA 1TYXA 3JURA 2QXZA 4OPWA 4XN0A 3SQVA 3VSUA 1KCDA 4YZAA 1TYUA 1O8MA 5JMCB 1O8JA 1O8DA 4OJLA 2VBEA 2XTYA 3N6ZA 3PETA 4XLAA 3VMVA 1KQ5A 5C1EA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2O0W A;  2QY1 A;  4XOT A;  2O1D A;  1KTW A;  2NTP A;  4XKV A;  2INU A;  1DBG A;  2NST A;  1O88 A;  2VBK A;  1PLU A;  4XLF A;  1BHE A;  4XM3 A;  4XOP A;  1OOC A;  1GQ8 A;  1IDK A;  4HWV A;  4XR6 A;  4YZQ A;  4XLE A;  4MXN A;  4OZY A;  3EQO A;  4XLC A;  1O8L A;  1EE6 A;  3VSV A;  1OFL A;  2IQ7 A;  2VJJ A;  1CZF A;  2VBM A;  3KRG A;  2NZM A;  3LMW A;  4AVZ A;  4URR A;  1O8K A;  4XN3 A;  4YEJ A;  5C1C A;  2NTB A;  1X0C A;  2PEC A;  1PE9 A;  2X6X A;  1OGO X;  1AIR A;  4OJ6 A;  1KCC A;  1PXZ A;  4Z03 A;  3WWG A;  3UW0 A;  4EW9 A;  2X6Y A;  2O0V A;  1IA5 A;  4NK8 A;  4XKW A;  2ODL A;  1VBL A;  1QJV A;  2EWE A;  4XON A;  1NHC A;  2BSP A;  2NT6 A;  4U4B A;  4Z05 A;  4OJP A;  3T9G A;  4U49 A;  1HG8 A;  3ZSC A;  1RMG A;  4W8R A;  2O04 A;  3VST A;  4W8T A;  4C2L A;  1OFM A;  3VMW A;  2UVE A;  4MR0 A;  1RU4 A;  1O8H A;  3GQ7 A;  4OJO A;  2VJI A;  4W8Q A;  4XL9 A;  1RWR A;  3GQA A;  1WMR A;  1O8G A;  1OGM X;  2NSP A;  1O8I A;  4XOR A;  4OZZ A;  3EQN A;  4XMY A;  3GRH A;  2UVF A;  4YZ0 A;  1BN8 A;  4YEL A;  1K5C A;  4NK6 A;  5AMV A;  3SUC A;  4Z06 A;  4XQF A;  1QCX A;  3B90 A;  2X3H A;  2Z8G A;  4XLH A;  2NT9 A;  4XNF A;  2O17 A;  4W8S A;  3ZPP A;  1XG2 A;  2PYG A;  1JTA A;  3GQ8 A;  2QX3 A;  1IB4 A;  4OJ5 A;  1JRG A;  4PMH A;  2PYH A;  3B8Y A;  4I84 A;  1O8F A;  1DBO A;  3B4N A;  1IDJ A;  3FY3 A;  2X6W A;  2X85 A;  1H80 A;  2INV A;  3GQ9 A;  1O8E A;  2NTQ A;  4YZX A;  3JUR A;  2QXZ A;  4XN0 A;  3VSU A;  1KCD A;  4YZA A;  1O8M A;  1O8J A;  1O8D A;  4OJL A;  2VBE A;  4XLA A;  3VMV A;  5C1E A; 
#chains in the Genus database with same CATH topology
 2O0W A;  2QY1 A;  2XC1 A;  4XOT A;  2O1D A;  1KTW A;  3NB2 A;  2NTP A;  3PSS A;  2INU A;  1DBG A;  2NST A;  4XKV A;  1O88 A;  1OFE A;  2VBK A;  2VFM A;  1QA2 A;  1EA0 A;  1PLU A;  2XT2 A;  4XLF A;  1BHE A;  2J8K A;  2V5I A;  4XM3 A;  4XOP A;  3SY2 A;  2BX6 A;  1OOC A;  1GQ8 A;  1IDK A;  4HWV A;  4OM9 A;  4XR6 A;  4YZQ A;  5DNS A;  1L1I A;  4XLE A;  4JRA C;  4MXN A;  4OZY A;  3EQO A;  4XLC A;  1O8L A;  2BM5 A;  1EE6 A;  3VSV A;  1WXR A;  3JX8 A;  1OFL A;  2IQ7 A;  2VJJ A;  1CZF A;  4YFO A;  2VBM A;  2VFN A;  2XT4 A;  3KRG A;  2NZM A;  3LMW A;  3DU1 X;  1HF2 A;  4AVZ A;  2O6W A;  1O8K A;  4URR A;  4XN3 A;  4YEJ A;  5C1C A;  1CLW A;  2NTB A;  1X0C A;  5JLV C;  1TSP A;  2PEC A;  1PE9 A;  2X6X A;  1OGO X;  1AIR A;  4OJ6 A;  4V02 C;  1KCC A;  1PXZ A;  4Z03 A;  2BM6 A;  3WWG A;  2B0R A;  3UW0 A;  4EW9 A;  2X6Y A;  1LM1 A;  3RIQ A;  1OFD A;  3BH7 B;  3P4G A;  1QQ1 A;  1TYV A;  2O0V A;  1IA5 A;  4NK8 A;  4XKW A;  2F3L A;  2ODL A;  1VBL A;  1QJV A;  2EWE A;  4XON A;  1QRB A;  1K8F A;  2BSP A;  3LJY A;  1NHC A;  1LLW A;  2NT6 A;  3H09 A;  4U4B A;  4Z05 A;  4OJP A;  3T9G A;  3ML3 A;  3LYC A;  2QZA A;  3BH6 B;  1DAB A;  4U49 A;  1HG8 A;  2W7Z A;  1QA1 A;  3ZSC A;  1RMG A;  4W8R A;  2O04 A;  2YUH A;  2G0Y A;  3VST A;  4W8T A;  4C2L A;  1OFM A;  3TH0 A;  1TYW A;  3VMW A;  2UVE A;  4MR0 A;  1RU4 A;  1O8H A;  3GQ7 A;  4OJO A;  2VJI A;  4W8Q A;  4YDT A;  4XL9 A;  1RWR A;  1QRC A;  1WMR A;  3GQA A;  4YC5 A;  1O8G A;  4YEI A;  1OGM X;  2NSP A;  2VFO A;  1O8I A;  2BM7 A;  4OZZ A;  3EQN A;  2J8I A;  3GRH A;  2XTW A;  4XMY A;  1LLZ A;  2UVF A;  4XOR A;  4YCQ A;  3SYJ A;  4YZ0 A;  1BN8 A;  1EZG A;  2BM4 A;  4NK6 A;  4YEL A;  1K5C A;  5AMV A;  3SUC A;  4Z06 A;  4XQF A;  1QCX A;  3B90 A;  2IOU G;  2X3H A;  2Z8G A;  4XLH A;  2NT9 A;  2VFP A;  2O17 A;  4XNF A;  4W8S A;  1QA3 A;  3ZPP A;  3AK5 A;  1XG2 A;  1JTA A;  2PYG A;  3GQ8 A;  3N90 A;  4KH3 A;  2QX3 A;  2VFQ A;  2XTX A;  1IB4 A;  4OJ5 A;  1JRG A;  3PSZ A;  4PMH A;  2PYH A;  3B8Y A;  4I84 A;  1O8F A;  1DBO A;  3B4N A;  1IDJ A;  2QYU A;  3FY3 A;  3SZE A;  1K4Z A;  2X6W A;  2X85 A;  1H80 A;  2INV A;  3NAW A;  3GQ9 A;  1O8E A;  2NTQ A;  4YZX A;  1TYX A;  3JUR A;  2QXZ A;  4OPW A;  4XN0 A;  3SQV A;  3VSU A;  1KCD A;  4YZA A;  1TYU A;  1O8M A;  5JMC B;  1O8J A;  1O8D A;  4OJL A;  2VBE A;  2XTY A;  3N6Z A;  3PET A;  4XLA A;  3VMV A;  1KQ5 A;  5C1E A; 
#chains in the Genus database with same CATH homology
 2O0W A;  2QY1 A;  4XOT A;  2O1D A;  1KTW A;  2NTP A;  4XKV A;  2INU A;  1DBG A;  2NST A;  1O88 A;  2VBK A;  1PLU A;  4XLF A;  1BHE A;  4XM3 A;  4XOP A;  1OOC A;  1GQ8 A;  1IDK A;  4HWV A;  4XR6 A;  4YZQ A;  4XLE A;  4MXN A;  4OZY A;  3EQO A;  4XLC A;  1O8L A;  1EE6 A;  3VSV A;  1OFL A;  2IQ7 A;  2VJJ A;  1CZF A;  2VBM A;  3KRG A;  2NZM A;  3LMW A;  4AVZ A;  4URR A;  1O8K A;  4XN3 A;  4YEJ A;  5C1C A;  2NTB A;  1X0C A;  2PEC A;  1PE9 A;  2X6X A;  1OGO X;  1AIR A;  4OJ6 A;  1KCC A;  1PXZ A;  4Z03 A;  3WWG A;  3UW0 A;  4EW9 A;  2X6Y A;  2O0V A;  1IA5 A;  4NK8 A;  4XKW A;  2ODL A;  1VBL A;  1QJV A;  2EWE A;  4XON A;  1NHC A;  2BSP A;  2NT6 A;  4U4B A;  4Z05 A;  4OJP A;  3T9G A;  4U49 A;  1HG8 A;  3ZSC A;  1RMG A;  4W8R A;  2O04 A;  3VST A;  4W8T A;  4C2L A;  1OFM A;  3VMW A;  2UVE A;  4MR0 A;  1RU4 A;  1O8H A;  3GQ7 A;  4OJO A;  2VJI A;  4W8Q A;  4XL9 A;  1RWR A;  3GQA A;  1WMR A;  1O8G A;  1OGM X;  2NSP A;  1O8I A;  4XOR A;  4OZZ A;  3EQN A;  4XMY A;  3GRH A;  2UVF A;  4YZ0 A;  1BN8 A;  4YEL A;  1K5C A;  4NK6 A;  5AMV A;  3SUC A;  4Z06 A;  4XQF A;  1QCX A;  3B90 A;  2X3H A;  2Z8G A;  4XLH A;  2NT9 A;  4XNF A;  2O17 A;  4W8S A;  3ZPP A;  1XG2 A;  2PYG A;  1JTA A;  3GQ8 A;  2QX3 A;  1IB4 A;  4OJ5 A;  1JRG A;  4PMH A;  2PYH A;  3B8Y A;  4I84 A;  1O8F A;  1DBO A;  3B4N A;  1IDJ A;  3FY3 A;  2X6W A;  2X85 A;  1H80 A;  2INV A;  3GQ9 A;  1O8E A;  2NTQ A;  4YZX A;  3JUR A;  2QXZ A;  4XN0 A;  3VSU A;  1KCD A;  4YZA A;  1O8M A;  1O8J A;  1O8D A;  4OJL A;  2VBE A;  4XLA A;  3VMV A;  5C1E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3LMWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations