3P4G | Genus

Total Genus 109

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	109
sequence length	301
structure length	301
Chain Sequence	HSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADFADY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 301 atoms

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301 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Marinomonas primoryensis
publication title	Anchored clathrate waters bind antifreeze proteins to ice. pubmed doi rcsb
molecule keywords	Antifreeze protein
total genus	109
structure length	301
sequence length	301
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2010-10-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18815	AFP_2	Bacterial antifreeze protein repeat

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.160	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	3p4gA00

3P4GA
chains in the Genus database with same CATH superfamily

3EQNA 2VFPA 4YFOA 3UW0A 1CZFA 3RIQA 4OJOA 3NAWA 1IDJA 3ZPPA 2O0WA 2ODLA 2PYHA 2BM6A 4YZXA 4XOTA 4OJ5A 1IA5A 1HF2A 1OFDA 3SY2A 1QCXA 5JMCB 2BX6A 4XMYA 5AMVA 2BM4A 4XORA 4XKVA 1TYWA 4YELA 5C1CA 4NK8A 1O8EA 2NSPA 1RMGA 1BHEA 2QY1A 1JRGA 3JX8A 1RU4A 2VBEA 1KQ5A 4XN0A 2X3HA 3VMVA 3H09A 1O8GA 2VJJA 2J8IA 1EZGA 2UVEA 2XTYA 4XOPA 2PYGA 3GQ7A 1K4ZA 2B0RA 2BSPA 4MR0A 1O8JA 1X0CA 3LMWA 4YC5A 4Z06A 1NHCA 2X6XA 5JLVC 4Z03A 1O8FA 4YZQA 1O88A 3SQVA 2QXZA 2INVA 4XLFA 2NTBA 1PXZA 1AIRA 1PLUA 2VBMA 4XLEA 2PECA 2QYUA 1PE9A 1QJVA 4OJLA 4W8SA 4XLAA 2X6YA 3SZEA 4C2LA 3VSUA 1OOCA 3AK5A 1QA2A 1DBGA 3GRHA 4PMHA 4YZ0A 1JTAA 1CLWA 1WMRA 4OM9A 2EWEA 2VFMA 4W8RA 2VBKA 3BH7B 3ZSCA 2O04A 1L1IA 2NTPA 3GQ9A 1KTWA 1O8DA 2NT6A 1LM1A 4JRAC 3T9GA 1OGMX 4XNFA 2QX3A 5DNSA 2YUHA 1RWRA 3SUCA 5C1EA 3BH6B 3B8YA 3TH0A 1GQ8A 2BM7A 4OJPA 4XKWA 3LYCA 2NSTA 4YEIA 2VFNA 4YDTA 3GQ8A 2Z8GA 3GQAA 4XLCA 3VSVA 3N90A 1WXRA 2IOUG 4W8TA 1K8FA 1TSPA 2INUA 3NB2A 3VMWA 1QA3A 1O8KA 1OGOX 3JURA 3WWGA 1KCDA 3N6ZA 1O8IA 2X85A 3P4GA 3PSSA 2UVFA 1OFLA 4XR6A 1QQ1A 3PETA 1QRBA 1O8MA 1LLZA 1H80A 2VFQA 2NZMA 2J8KA 4OPWA 2O6WA 1O8LA 3FY3A 4XM3A 2XC1A 4XL9A 4YZAA 1K5CA 4XQFA 1TYXA 3PSZA 4HWVA 4OZZA 2XT2A 4OZYA 4XLHA 1TYVA 2O0VA 3SYJA 4AVZA 4U49A 4Z05A 1BN8A 1DBOA 2NT9A 4KH3A 2IQ7A 3VSTA 2NTQA 2F3LA 2XTXA 3DU1X 2X6WA 4URRA 4W8QA 1IB4A 3EQOA 2BM5A 1O8HA 2VFOA 1KCCA 4YEJA 1DABA 4YCQA 1EA0A 1TYUA 2QZAA 2O1DA 3KRGA 4V02C 1OFMA 2XTWA 3LJYA 4EW9A 1QA1A 4XN3A 1XG2A 4MXNA 3B90A 2VJIA 2W7ZA 2V5IA 1VBLA 4U4BA 1QRCA 4I84A 4XONA 2O17A 1HG8A 3B4NA 4NK6A 4OJ6A 1IDKA 1OFEA 3ML3A 2XT4A 1LLWA 2G0YA 1EE6A
chains in the Genus database with same CATH topology

2VFPA 1K4ZA 2B0RA 3RIQA 4KH3A 4OJOA 3BH6B 5JLVC 3TH0A 2F3LA 4OJPA 2BM7A 3LYCA 2BM6A 2VFNA 1WXRA 2BM5A 2VFOA 2IOUG 3N90A 4OJ5A 1K8FA 1HF2A 1TSPA 4OJLA 5JMCB 1DABA 1QA3A 1TYUA 2BX6A 3N6ZA 3SZEA 4V02C 3LJYA 2BM4A 3P4GA 1TYWA 1QA1A 3AK5A 1QQ1A 3PETA 1QA2A 1QRBA 2W7ZA 2V5IA 1CLWA 2VFQA 3JX8A 4OPWA 4OM9A 1QRCA 1KQ5A 2VFMA 3BH7B 3H09A 4OJ6A 2J8IA 2XC1A 4JRAC 3ML3A 1TYXA 2G0YA 1TYVA 3SYJA 2YUHA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3P4G A; 
#chains in the Genus database with same CATH topology
 3EQN A;  2VFP A;  4YFO A;  3UW0 A;  1CZF A;  3RIQ A;  4OJO A;  3NAW A;  1IDJ A;  3ZPP A;  2O0W A;  2ODL A;  2PYH A;  2BM6 A;  4YZX A;  4XOT A;  4OJ5 A;  1IA5 A;  1HF2 A;  1OFD A;  3SY2 A;  1QCX A;  5JMC B;  2BX6 A;  4XMY A;  5AMV A;  2BM4 A;  4XOR A;  4XKV A;  1TYW A;  4YEL A;  5C1C A;  4NK8 A;  1O8E A;  2NSP A;  1RMG A;  1BHE A;  2QY1 A;  1JRG A;  3JX8 A;  1RU4 A;  2VBE A;  1KQ5 A;  4XN0 A;  2X3H A;  3VMV A;  3H09 A;  1O8G A;  2VJJ A;  2J8I A;  1EZG A;  2UVE A;  2XTY A;  4XOP A;  2PYG A;  3GQ7 A;  1K4Z A;  2B0R A;  2BSP A;  4MR0 A;  1O8J A;  1X0C A;  3LMW A;  4YC5 A;  4Z06 A;  1NHC A;  2X6X A;  5JLV C;  4Z03 A;  1O8F A;  4YZQ A;  1O88 A;  3SQV A;  2QXZ A;  2INV A;  4XLF A;  2NTB A;  1PXZ A;  1AIR A;  1PLU A;  2VBM A;  4XLE A;  2PEC A;  2QYU A;  1PE9 A;  1QJV A;  4OJL A;  4W8S A;  4XLA A;  2X6Y A;  3SZE A;  4C2L A;  3VSU A;  1OOC A;  3AK5 A;  1QA2 A;  1DBG A;  3GRH A;  4PMH A;  4YZ0 A;  1JTA A;  1CLW A;  1WMR A;  4OM9 A;  2EWE A;  2VFM A;  4W8R A;  2VBK A;  3BH7 B;  3ZSC A;  2O04 A;  1L1I A;  2NTP A;  3GQ9 A;  1KTW A;  1O8D A;  2NT6 A;  1LM1 A;  4JRA C;  3T9G A;  1OGM X;  4XNF A;  2QX3 A;  5DNS A;  2YUH A;  1RWR A;  3SUC A;  5C1E A;  3BH6 B;  3B8Y A;  3TH0 A;  1GQ8 A;  2BM7 A;  4OJP A;  4XKW A;  3LYC A;  2NST A;  4YEI A;  2VFN A;  4YDT A;  3GQ8 A;  2Z8G A;  3GQA A;  4XLC A;  3VSV A;  3N90 A;  1WXR A;  2IOU G;  4W8T A;  1K8F A;  1TSP A;  2INU A;  3NB2 A;  3VMW A;  1QA3 A;  1O8K A;  1OGO X;  3JUR A;  3WWG A;  1KCD A;  3N6Z A;  1O8I A;  2X85 A;  3P4G A;  3PSS A;  2UVF A;  1OFL A;  4XR6 A;  1QQ1 A;  3PET A;  1QRB A;  1O8M A;  1LLZ A;  1H80 A;  2VFQ A;  2NZM A;  2J8K A;  4OPW A;  2O6W A;  1O8L A;  3FY3 A;  4XM3 A;  2XC1 A;  4XL9 A;  4YZA A;  1K5C A;  4XQF A;  1TYX A;  3PSZ A;  4HWV A;  4OZZ A;  2XT2 A;  4OZY A;  4XLH A;  1TYV A;  2O0V A;  3SYJ A;  4AVZ A;  4U49 A;  4Z05 A;  1BN8 A;  1DBO A;  2NT9 A;  4KH3 A;  2IQ7 A;  3VST A;  2NTQ A;  2F3L A;  2XTX A;  3DU1 X;  2X6W A;  4URR A;  4W8Q A;  1IB4 A;  3EQO A;  2BM5 A;  1O8H A;  2VFO A;  1KCC A;  4YEJ A;  1DAB A;  4YCQ A;  1EA0 A;  1TYU A;  2QZA A;  2O1D A;  3KRG A;  4V02 C;  1OFM A;  2XTW A;  3LJY A;  4EW9 A;  1QA1 A;  4XN3 A;  1XG2 A;  4MXN A;  3B90 A;  2VJI A;  2W7Z A;  2V5I A;  1VBL A;  4U4B A;  1QRC A;  4I84 A;  4XON A;  2O17 A;  1HG8 A;  3B4N A;  4NK6 A;  4OJ6 A;  1IDK A;  1OFE A;  3ML3 A;  2XT4 A;  1LLW A;  2G0Y A;  1EE6 A; 
#chains in the Genus database with same CATH homology
 2VFP A;  1K4Z A;  2B0R A;  3RIQ A;  4KH3 A;  4OJO A;  3BH6 B;  5JLV C;  3TH0 A;  2F3L A;  4OJP A;  2BM7 A;  3LYC A;  2BM6 A;  2VFN A;  1WXR A;  2BM5 A;  2VFO A;  2IOU G;  3N90 A;  4OJ5 A;  1K8F A;  1HF2 A;  1TSP A;  4OJL A;  5JMC B;  1DAB A;  1QA3 A;  1TYU A;  2BX6 A;  3N6Z A;  3SZE A;  4V02 C;  3LJY A;  2BM4 A;  3P4G A;  1TYW A;  1QA1 A;  3AK5 A;  1QQ1 A;  3PET A;  1QA2 A;  1QRB A;  2W7Z A;  2V5I A;  1CLW A;  2VFQ A;  3JX8 A;  4OPW A;  4OM9 A;  1QRC A;  1KQ5 A;  2VFM A;  3BH7 B;  3H09 A;  4OJ6 A;  2J8I A;  2XC1 A;  4JRA C;  3ML3 A;  1TYX A;  2G0Y A;  1TYV A;  3SYJ A;  2YUH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3P4GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations