3PSS | Genus

Total Genus 82

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	82
sequence length	216
structure length	213
Chain Sequence	MIDCFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGLIVFP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Aeromonas hydrophila
publication title	Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium pubmed doi rcsb
molecule keywords	Qnr
total genus	82
structure length	213
sequence length	216
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-12-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00805	Pentapeptide	Pentapeptide repeats (8 copies)
A	PF13599	Pentapeptide_4	Pentapeptide repeats (9 copies)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.80	Mainly Beta	3 Solenoid	Pectate Lyase C-like	E3 ubiquitin-protein ligase SopA	3pssA00

2XTXA 2O6WA 2QZAA 2J8KA 4YCQA 3SY2A 4YFOA 2XT2A 3NAWA 3NB2A 3PSSA 2QYUA 3PSZA 2XTYA 3DU1X 4YDTA 4YEIA 2XTWA 3SQVA 5DNSA 4YC5A 2XT4A
chains in the Genus database with same CATH superfamily

2V5IA 2XTXA 5JLVC 2O6WA 1JTAA 2J8KA 4YCQA 1RWRA 4U49A 4OZZA 3AK5A 2X6WA 3WWGA 2XT2A 2QX3A 2W7ZA 2QYUA 3TH0A 2BX6A 4YEJA 2XTYA 1LM1A 2VJJA 3JURA 4PMHA 1QA3A 1O8HA 2XC1A 4XR6A 4YEIA 4XKWA 2QY1A 4V02C 3PETA 1K5CA 4I84A 4OM9A 4OJ5A 4XNFA 1KTWA 1O8JA 2UVFA 4OJOA 1LLWA 1KQ5A 1L1IA 1CZFA 3VMVA 1CLWA 4XOTA 1QJVA 1O88A 1OGOX 1NHCA 1TYWA 1OGMX 1QQ1A 4OJLA 2VFQA 3SZEA 2NT6A 3ZSCA 4XL9A 3SYJA 1QRBA 3GQAA 1OOCA 2X6YA 4YFOA 1O8FA 1O8KA 4YELA 1PXZA 4YZXA 2F3LA 1H80A 3PSSA 1VBLA 4W8SA 4YZ0A 2O1DA 1TYXA 3GQ9A 2VFMA 1QA2A 2O04A 2PYGA 2BM6A 2BM4A 4YDTA 3RIQA 3T9GA 2NTPA 1K4ZA 2ODLA 2IOUG 1PE9A 2PECA 3LMWA 3B4NA 1TSPA 2G0YA 1HG8A 3LJYA 3H09A 3VMWA 1DBOA 4NK8A 1O8EA 4XLFA 5C1CA 1EZGA 4XLHA 3VSVA 5AMVA 2VFOA 4YZQA 1JRGA 2PYHA 2VFNA 4XQFA 1PLUA 2NSPA 1KCDA 2XT4A 3SUCA 3ZPPA 2EWEA 1EA0A 2UVEA 3ML3A 1OFLA 4URRA 2VJIA 1HF2A 4XM3A 2X85A 1DABA 4XLAA 3FY3A 4AVZA 4HWVA 4XONA 3PSZA 3LYCA 1QCXA 3KRGA 2BSPA 2X6XA 3DU1X 1KCCA 5C1EA 1X0CA 3EQOA 1O8IA 1K8FA 3GRHA 4OJ6A 1QA1A 1IDJA 3GQ8A 4MR0A 4XN3A 4Z05A 4C2LA 1AIRA 2BM5A 2YUHA 3B90A 2BM7A 3SQVA 3VSTA 4OZYA 4W8TA 4XN0A 2J8IA 4XKVA 4Z06A 1EE6A 1OFMA 2VBKA 4XLEA 4XOPA 3P4GA 2B0RA 3BH7B 4U4BA 2QXZA 1RU4A 2X3HA 4XMYA 1GQ8A 2QZAA 1OFEA 3SY2A 4YZAA 1O8LA 1TYVA 2NZMA 2Z8GA 4NK6A 3NAWA 3NB2A 4XLCA 1IDKA 3N90A 4EW9A 4MXNA 4XORA 2INVA 2O0VA 2VBEA 4OPWA 2INUA 4Z03A 2O0WA 4JRAC 5JMCB 1WXRA 1WMRA 2NSTA 3JX8A 1O8MA 2XTWA 2IQ7A 2NTBA 3BH6B 1RMGA 3GQ7A 1O8GA 3UW0A 2NT9A 1IA5A 1TYUA 2NTQA 2VBMA 2VFPA 3EQNA 1LLZA 4KH3A 4W8RA 5DNSA 1DBGA 3VSUA 1OFDA 3B8YA 3N6ZA 1QRCA 4W8QA 4OJPA 1BHEA 4YC5A 1XG2A 1IB4A 2O17A 1BN8A 1O8DA
chains in the Genus database with same CATH topology

2XTXA 2O6WA 2QZAA 2J8KA 4YCQA 3SY2A 4YFOA 2XT2A 3NAWA 3NB2A 3PSSA 2QYUA 3PSZA 2XTYA 3DU1X 4YDTA 4YEIA 2XTWA 3SQVA 5DNSA 4YC5A 2XT4A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2XTX A;  2O6W A;  2QZA A;  2J8K A;  4YCQ A;  3SY2 A;  4YFO A;  2XT2 A;  3NAW A;  3NB2 A;  3PSS A;  2QYU A;  3PSZ A;  2XTY A;  3DU1 X;  4YDT A;  4YEI A;  2XTW A;  3SQV A;  5DNS A;  4YC5 A;  2XT4 A; 
#chains in the Genus database with same CATH topology
 2V5I A;  2XTX A;  5JLV C;  2O6W A;  1JTA A;  2J8K A;  4YCQ A;  1RWR A;  4U49 A;  4OZZ A;  3AK5 A;  2X6W A;  3WWG A;  2XT2 A;  2QX3 A;  2W7Z A;  2QYU A;  3TH0 A;  2BX6 A;  4YEJ A;  2XTY A;  1LM1 A;  2VJJ A;  3JUR A;  4PMH A;  1QA3 A;  1O8H A;  2XC1 A;  4XR6 A;  4YEI A;  4XKW A;  2QY1 A;  4V02 C;  3PET A;  1K5C A;  4I84 A;  4OM9 A;  4OJ5 A;  4XNF A;  1KTW A;  1O8J A;  2UVF A;  4OJO A;  1LLW A;  1KQ5 A;  1L1I A;  1CZF A;  3VMV A;  1CLW A;  4XOT A;  1QJV A;  1O88 A;  1OGO X;  1NHC A;  1TYW A;  1OGM X;  1QQ1 A;  4OJL A;  2VFQ A;  3SZE A;  2NT6 A;  3ZSC A;  4XL9 A;  3SYJ A;  1QRB A;  3GQA A;  1OOC A;  2X6Y A;  4YFO A;  1O8F A;  1O8K A;  4YEL A;  1PXZ A;  4YZX A;  2F3L A;  1H80 A;  3PSS A;  1VBL A;  4W8S A;  4YZ0 A;  2O1D A;  1TYX A;  3GQ9 A;  2VFM A;  1QA2 A;  2O04 A;  2PYG A;  2BM6 A;  2BM4 A;  4YDT A;  3RIQ A;  3T9G A;  2NTP A;  1K4Z A;  2ODL A;  2IOU G;  1PE9 A;  2PEC A;  3LMW A;  3B4N A;  1TSP A;  2G0Y A;  1HG8 A;  3LJY A;  3H09 A;  3VMW A;  1DBO A;  4NK8 A;  1O8E A;  4XLF A;  5C1C A;  1EZG A;  4XLH A;  3VSV A;  5AMV A;  2VFO A;  4YZQ A;  1JRG A;  2PYH A;  2VFN A;  4XQF A;  1PLU A;  2NSP A;  1KCD A;  2XT4 A;  3SUC A;  3ZPP A;  2EWE A;  1EA0 A;  2UVE A;  3ML3 A;  1OFL A;  4URR A;  2VJI A;  1HF2 A;  4XM3 A;  2X85 A;  1DAB A;  4XLA A;  3FY3 A;  4AVZ A;  4HWV A;  4XON A;  3PSZ A;  3LYC A;  1QCX A;  3KRG A;  2BSP A;  2X6X A;  3DU1 X;  1KCC A;  5C1E A;  1X0C A;  3EQO A;  1O8I A;  1K8F A;  3GRH A;  4OJ6 A;  1QA1 A;  1IDJ A;  3GQ8 A;  4MR0 A;  4XN3 A;  4Z05 A;  4C2L A;  1AIR A;  2BM5 A;  2YUH A;  3B90 A;  2BM7 A;  3SQV A;  3VST A;  4OZY A;  4W8T A;  4XN0 A;  2J8I A;  4XKV A;  4Z06 A;  1EE6 A;  1OFM A;  2VBK A;  4XLE A;  4XOP A;  3P4G A;  2B0R A;  3BH7 B;  4U4B A;  2QXZ A;  1RU4 A;  2X3H A;  4XMY A;  1GQ8 A;  2QZA A;  1OFE A;  3SY2 A;  4YZA A;  1O8L A;  1TYV A;  2NZM A;  2Z8G A;  4NK6 A;  3NAW A;  3NB2 A;  4XLC A;  1IDK A;  3N90 A;  4EW9 A;  4MXN A;  4XOR A;  2INV A;  2O0V A;  2VBE A;  4OPW A;  2INU A;  4Z03 A;  2O0W A;  4JRA C;  5JMC B;  1WXR A;  1WMR A;  2NST A;  3JX8 A;  1O8M A;  2XTW A;  2IQ7 A;  2NTB A;  3BH6 B;  1RMG A;  3GQ7 A;  1O8G A;  3UW0 A;  2NT9 A;  1IA5 A;  1TYU A;  2NTQ A;  2VBM A;  2VFP A;  3EQN A;  1LLZ A;  4KH3 A;  4W8R A;  5DNS A;  1DBG A;  3VSU A;  1OFD A;  3B8Y A;  3N6Z A;  1QRC A;  4W8Q A;  4OJP A;  1BHE A;  4YC5 A;  1XG2 A;  1IB4 A;  2O17 A;  1BN8 A;  1O8D A; 
#chains in the Genus database with same CATH homology
 2XTX A;  2O6W A;  2QZA A;  2J8K A;  4YCQ A;  3SY2 A;  4YFO A;  2XT2 A;  3NAW A;  3NB2 A;  3PSS A;  2QYU A;  3PSZ A;  2XTY A;  3DU1 X;  4YDT A;  4YEI A;  2XTW A;  3SQV A;  5DNS A;  4YC5 A;  2XT4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3PSSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations