The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
81
|
sequence length |
216
|
structure length |
213
|
Chain Sequence |
MIKDKFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAERFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGLIVFP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium
pubmed doi rcsb |
| molecule keywords |
Qnr
|
| molecule tags |
Cell cycle
|
| source organism |
Aeromonas hydrophila
|
| total genus |
81
|
| structure length |
213
|
| sequence length |
216
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-12-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00805 | Pentapeptide | Pentapeptide repeats (8 copies) |
| A | PF13599 | Pentapeptide_4 | Pentapeptide repeats (9 copies) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | E3 ubiquitin-protein ligase SopA |
#chains in the Genus database with same CATH superfamily 5DNS A; 2XTY A; 2QZA A; 4YCQ A; 2XTX A; 3PSZ A; 2QYU A; 2XT2 A; 3DU1 X; 2XT4 A; 3SY2 A; 4YC5 A; 4YEI A; 4YDT A; 4YFO A; 3NAW A; 3NB2 A; 2XTW A; 2O6W A; 2J8K A; 3SQV A; 3PSS A; #chains in the Genus database with same CATH topology 1L1I A; 1LLW A; 1KCD A; 4OJP A; 4OJ6 A; 2BX6 A; 4XKW A; 1LLZ A; 1QJV A; 1O8H A; 3VMW A; 2NT9 A; 1DBO A; 4PMH A; 1K5C A; 4YZA A; 2YUH A; 4XLH A; 2X6X A; 2XTX A; 2VFP A; 3SUC A; 3T9G A; 1AIR A; 4U49 A; 3TH0 A; 3GQ7 A; 1DAB A; 3B8Y A; 1CLW A; 2O1D A; 2QYU A; 1QCX A; 1KQ5 A; 1OOC A; 4XL9 A; 2W7Z A; 1NHC A; 4XNF A; 4C2L A; 2XT4 A; 1OGM X; 1GQ8 A; 2BM4 A; 1O8M A; 4XMY A; 2PYG A; 1VBL A; 4MR0 A; 3VSU A; 4OJO A; 4YZ0 A; 4YFO A; 3NAW A; 3NB2 A; 1QA2 A; 3SZE A; 1BHE A; 1O8J A; 1QRC A; 2O6W A; 4NK8 A; 3ZPP A; 3EQO A; 4I84 A; 4Z05 A; 1O8G A; 1EE6 A; 3N6Z A; 1O8K A; 4Z06 A; 2PYH A; 1EA0 A; 1LM1 A; 5DNS A; 2UVE A; 2XTY A; 4MXN A; 2NTB A; 4AVZ A; 2J8I A; 4XON A; 5JLV C; 4YZX A; 1IA5 A; 3GRH A; 4OPW A; 3GQ9 A; 5AMV A; 3GQA A; 4W8Q A; 1KTW A; 2O17 A; 2X3H A; 4YEJ A; 4XLC A; 2BM5 A; 2BM7 A; 1PXZ A; 2F3L A; 4XN3 A; 1BN8 A; 1TYU A; 1RWR A; 4XLA A; 1IDK A; 2IQ7 A; 2INU A; 2NST A; 4OJL A; 2VBK A; 1QA1 A; 4OZY A; 2BM6 A; 3SYJ A; 1IB4 A; 2XC1 A; 3N90 A; 3SY2 A; 1XG2 A; 2Z8G A; 1H80 A; 1TYV A; 3AK5 A; 1O8E A; 2B0R A; 2O0V A; 4XN0 A; 3JX8 A; 1HG8 A; 4XR6 A; 1QRB A; 1OFE A; 1OGO X; 2VFM A; 2J8K A; 3KRG A; 3B4N A; 3PSS A; 4HWV A; 4OZZ A; 3LJY A; 1RMG A; 1TSP A; 4XKV A; 3ML3 A; 2NTP A; 4W8R A; 2O04 A; 2QZA A; 2VFN A; 4W8T A; 4XLF A; 5C1C A; 2X6Y A; 2PEC A; 1PLU A; 4YZQ A; 3RIQ A; 1WXR A; 4OM9 A; 2O0W A; 2QX3 A; 2INV A; 4OJ5 A; 3UW0 A; 2NZM A; 4V02 C; 1HF2 A; 2QXZ A; 3DU1 X; 3EQN A; 2X85 A; 5JMC B; 2VJI A; 1RU4 A; 1CZF A; 1OFL A; 2VJJ A; 4YEI A; 2X6W A; 3LYC A; 3FY3 A; 1X0C A; 3P4G A; 4YDT A; 2EWE A; 1O88 A; 4W8S A; 4URR A; 3ZSC A; 2VFQ A; 2NSP A; 4YEL A; 3JUR A; 2QY1 A; 4XLE A; 4XOR A; 3SQV A; 4XQF A; 1K8F A; 4U4B A; 3H09 A; 1PE9 A; 2VBM A; 1IDJ A; 1O8D A; 1O8L A; 5C1E A; 4Z03 A; 1WMR A; 2G0Y A; 1O8F A; 1DBG A; 1O8I A; 2VBE A; 3VMV A; 1TYW A; 4YCQ A; 1TYX A; 3WWG A; 1OFD A; 1KCC A; 1K4Z A; 1EZG A; 3PSZ A; 1JTA A; 4XM3 A; 2NT6 A; 3VST A; 2XT2 A; 4KH3 A; 2V5I A; 1OFM A; 2NTQ A; 2VFO A; 4YC5 A; 3PET A; 2UVF A; 1QQ1 A; 3GQ8 A; 3LMW A; 4EW9 A; 2ODL A; 4NK6 A; 2IOU G; 3B90 A; 4XOP A; 1QA3 A; 2XTW A; 3BH6 B; 3VSV A; 2BSP A; 4JRA C; 4XOT A; 1JRG A; 3BH7 B; #chains in the Genus database with same CATH homology 5DNS A; 2XTY A; 2QZA A; 4YCQ A; 2XTX A; 3PSZ A; 2QYU A; 2XT2 A; 3DU1 X; 2XT4 A; 3SY2 A; 4YC5 A; 4YEI A; 4YDT A; 4YFO A; 3NAW A; 3NB2 A; 2XTW A; 2O6W A; 2J8K A; 3SQV A; 3PSS A;
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