3T9GA

The crystal structure of family 3 pectate lyase from caldicellulosiruptor bescii
Total Genus 79
2040608010012014016018001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
196
structure length
196
Chain Sequence
VGTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAADKVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-8)TI1 (-1-2)TII1 (1-4)TI'1 (22-25)S4 (26-29)EMPTYS5 (45-47)TII2 (15-18)S3 (19-21)TII3 (48-51)S6 (52-58)TIV2 (59-62)TIV4 (82-85)S7 (66-68)S8 (72-79)S9 (87-89)S10 (93-98)S11 (101-112)S13 (142-160)S12 (116-134)TII4 (135-138)S14 (168-170)TI2 (163-166)TIV9 (170-173)S15 (190-192)TIV11 (178-181)TVIII9 (184-187)3H1 (187-189)TIV1 (29-32)S2 (12-14)TVIII2 (79-82)TII'1 (62-65)TVIII1 (43-46)TIV10 (175-178)Updating...
connected with : NaN
publication title A 1.5 A resolution X-ray structure of the catalytic module of Caldicellulosiruptor bescii family 3 pectate lyase.
pubmed doi rcsb
molecule tags Lyase
source organism Caldicellulosiruptor bescii
molecule keywords Pectate lyase
total genus 79
structure length 196
sequence length 196
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2011-08-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3t9gA00
2QX3A 4NK6A 1O8EA 1RU4A 4XR6A 1AIRA 3KRGA 4XOPA 1OFLA 3ZPPA 4XLFA 1O8JA 3VSUA 3VSVA 4XLAA 3ZSCA 1KCDA 4XKWA 2X6YA 4XOTA 2O04A 1VBLA 2O0WA 4Z05A 4XN0A 2X6WA 1IDJA 3GQ7A 3VMVA 4Z06A 2PYGA 1OFMA 4MR0A 1H80A 3SUCA 1OGMX 3UW0A 4EW9A 1O8KA 4XM3A 1KCCA 5C1EA 3JURA 1O8HA 1EE6A 1O88A 1XG2A 1OGOX 1HG8A 4XL9A 2O17A 2NTBA 1IDKA 4W8SA 5C1CA 5AMVA 2BSPA 2NSTA 4XLHA 2NZMA 3B90A 1DBGA 2VBEA 2X85A 1IB4A 1JTAA 4OJLA 2UVEA 4U49A 2QXZA 1QJVA 3B4NA 4XKVA 4HWVA 1O8FA 4OZZA 4YELA 3EQOA 4XNFA 4YZXA 3T9GA 2NTQA 2EWEA 2X6XA 4YEJA 2X3HA 4YZAA 2PECA 3EQNA 4OJ6A 2UVFA 4C2LA 4NK8A 1PE9A 1O8DA 4W8TA 1O8MA 4XN3A 1X0CA 1BHEA 4OJPA 2O1DA 1KTWA 3VSTA 1DBOA 2ODLA 3B8YA 4Z03A 3VMWA 1IA5A 4XLEA 2VBKA 1GQ8A 3FY3A 4I84A 1CZFA 1NHCA 3WWGA 4OJOA 2VBMA 4W8RA 4PMHA 1O8GA 1PLUA 1RMGA 2NTPA 4AVZA 3GRHA 4U4BA 1QCXA 1K5CA 2IQ7A 2NSPA 1O8LA 3LMWA 4XLCA 2INUA 2PYHA 3GQ9A 2Z8GA 2QY1A 4OJ5A 4XORA 2NT9A 2INVA 3GQ8A 4W8QA 2VJIA 1JRGA 4XQFA 2VJJA 4URRA 4XMYA 1BN8A 3GQAA 1O8IA 1WMRA 4OZYA 1PXZA 2NT6A 4XONA 2O0VA 1OOCA 1RWRA 4MXNA 4YZ0A 4YZQA
chains in the Genus database with same CATH superfamily
2QX3A 3JX8A 4NK6A 1O8EA 2BM6A 2BM4A 1RU4A 4KH3A 4XR6A 1EZGA 4YFOA 3ML3A 1AIRA 4YC5A 3KRGA 4XOPA 1QA3A 3SQVA 1OFLA 3ZPPA 4XLFA 2B0RA 1O8JA 2VFPA 1LLZA 3VSUA 3VSVA 4XLAA 3ZSCA 1KCDA 4XKWA 2X6YA 4XOTA 2O04A 1VBLA 2O0WA 4Z05A 4XN0A 2X6WA 1IDJA 3GQ7A 3VMVA 4Z06A 2PYGA 1OFMA 3SY2A 4MR0A 2G0YA 4YZQA 1H80A 2XT2A 3SUCA 1OGMX 3UW0A 2VFOA 4EW9A 1O8KA 4XM3A 1KCCA 5C1EA 1TSPA 3JURA 1O8HA 3LJYA 2BX6A 1CLWA 1EE6A 1HF2A 3BH7B 1O88A 2XC1A 2IOUG 3SYJA 1EA0A 5DNSA 3NAWA 1XG2A 1OGOX 1HG8A 1WXRA 4XL9A 2O17A 2NTBA 2XTWA 1IDKA 4W8SA 4YCQA 5C1CA 5AMVA 2BSPA 2NSTA 4XLHA 2NZMA 2QYUA 3B90A 1TYUA 1DBGA 5JLVC 1QRBA 2VBEA 2X85A 1IB4A 2YUHA 1JTAA 4OJLA 2UVEA 4U49A 2QXZA 2QZAA 1QJVA 3PETA 3B4NA 4XKVA 1K8FA 1TYWA 4HWVA 1O8FA 2W7ZA 4OZZA 4YELA 1OFDA 3AK5A 2VFQA 4V02C 3EQOA 2VFMA 4XNFA 4YZXA 3T9GA 2NTQA 2EWEA 2X6XA 4YEJA 2X3HA 4YZAA 2PECA 3EQNA 3PSZA 4OJ6A 1QRCA 2UVFA 3LYCA 4NK8A 4C2LA 1PE9A 1O8DA 3PSSA 1DABA 4W8TA 1O8MA 4XN3A 1X0CA 1BHEA 2F3LA 4OJPA 2O1DA 1KTWA 3VSTA 1DBOA 2ODLA 3B8YA 4Z03A 3SZEA 3VMWA 1IA5A 2BM5A 4XLEA 2VBKA 2XTYA 1GQ8A 4OM9A 1QQ1A 3FY3A 4I84A 1CZFA 1NHCA 1K4ZA 3WWGA 4OJOA 1QA2A 2VBMA 1L1IA 4W8RA 1OFEA 4PMHA 1O8GA 1PLUA 1RMGA 2NTPA 4AVZA 3NB2A 3GRHA 4U4BA 1LLWA 1QCXA 3H09A 1K5CA 2IQ7A 2NSPA 3TH0A 1O8LA 1LM1A 3LMWA 4XLCA 2INUA 3N90A 1KQ5A 5JMCB 2PYHA 3GQ9A 2Z8GA 2J8IA 2QY1A 4OPWA 3RIQA 4OJ5A 4XORA 2NT9A 2INVA 3GQ8A 2VFNA 4JRAC 4W8QA 2VJIA 1JRGA 4YEIA 4XQFA 2VJJA 4URRA 4XMYA 1BN8A 3GQAA 1QA1A 1TYVA 2O6WA 1O8IA 1TYXA 2XT4A 1WMRA 4OZYA 2V5IA 2J8KA 1PXZA 2NT6A 4XONA 2O0VA 1OOCA 3N6ZA 3P4GA 3BH6B 3DU1X 2XTXA 1RWRA 4MXNA 4YZ0A 2BM7A 4YDTA
chains in the Genus database with same CATH topology
2QX3A 4NK6A 1O8EA 1RU4A 4XR6A 1AIRA 3KRGA 4XOPA 1OFLA 3ZPPA 4XLFA 1O8JA 3VSUA 3VSVA 4XLAA 3ZSCA 1KCDA 4XKWA 2X6YA 4XOTA 2O04A 1VBLA 2O0WA 4Z05A 4XN0A 2X6WA 1IDJA 3GQ7A 3VMVA 4Z06A 2PYGA 1OFMA 4MR0A 1H80A 3SUCA 1OGMX 3UW0A 4EW9A 1O8KA 4XM3A 1KCCA 5C1EA 3JURA 1O8HA 1EE6A 1O88A 1XG2A 1OGOX 1HG8A 4XL9A 2O17A 2NTBA 1IDKA 4W8SA 5C1CA 5AMVA 2BSPA 2NSTA 4XLHA 2NZMA 3B90A 1DBGA 2VBEA 2X85A 1IB4A 1JTAA 4OJLA 2UVEA 4U49A 2QXZA 1QJVA 3B4NA 4XKVA 4HWVA 1O8FA 4OZZA 4YELA 3EQOA 4XNFA 4YZXA 3T9GA 2NTQA 2EWEA 2X6XA 4YEJA 2X3HA 4YZAA 2PECA 3EQNA 4OJ6A 2UVFA 4C2LA 4NK8A 1PE9A 1O8DA 4W8TA 1O8MA 4XN3A 1X0CA 1BHEA 4OJPA 2O1DA 1KTWA 3VSTA 1DBOA 2ODLA 3B8YA 4Z03A 3VMWA 1IA5A 4XLEA 2VBKA 1GQ8A 3FY3A 4I84A 1CZFA 1NHCA 3WWGA 4OJOA 2VBMA 4W8RA 4PMHA 1O8GA 1PLUA 1RMGA 2NTPA 4AVZA 3GRHA 4U4BA 1QCXA 1K5CA 2IQ7A 2NSPA 1O8LA 3LMWA 4XLCA 2INUA 2PYHA 3GQ9A 2Z8GA 2QY1A 4OJ5A 4XORA 2NT9A 2INVA 3GQ8A 4W8QA 2VJIA 1JRGA 4XQFA 2VJJA 4URRA 4XMYA 1BN8A 3GQAA 1O8IA 1WMRA 4OZYA 1PXZA 2NT6A 4XONA 2O0VA 1OOCA 1RWRA 4MXNA 4YZ0A 4YZQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QX3 A;  4NK6 A;  1O8E A;  1RU4 A;  4XR6 A;  1AIR A;  3KRG A;  4XOP A;  1OFL A;  3ZPP A;  4XLF A;  1O8J A;  3VSU A;  3VSV A;  4XLA A;  3ZSC A;  1KCD A;  4XKW A;  2X6Y A;  4XOT A;  2O04 A;  1VBL A;  2O0W A;  4Z05 A;  4XN0 A;  2X6W A;  1IDJ A;  3GQ7 A;  3VMV A;  4Z06 A;  2PYG A;  1OFM A;  4MR0 A;  1H80 A;  3SUC A;  1OGM X;  3UW0 A;  4EW9 A;  1O8K A;  4XM3 A;  1KCC A;  5C1E A;  3JUR A;  1O8H A;  1EE6 A;  1O88 A;  1XG2 A;  1OGO X;  1HG8 A;  4XL9 A;  2O17 A;  2NTB A;  1IDK A;  4W8S A;  5C1C A;  5AMV A;  2BSP A;  2NST A;  4XLH A;  2NZM A;  3B90 A;  1DBG A;  2VBE A;  2X85 A;  1IB4 A;  1JTA A;  4OJL A;  2UVE A;  4U49 A;  2QXZ A;  1QJV A;  3B4N A;  4XKV A;  4HWV A;  1O8F A;  4OZZ A;  4YEL A;  3EQO A;  4XNF A;  4YZX A;  3T9G A;  2NTQ A;  2EWE A;  2X6X A;  4YEJ A;  2X3H A;  4YZA A;  2PEC A;  3EQN A;  4OJ6 A;  2UVF A;  4C2L A;  4NK8 A;  1PE9 A;  1O8D A;  4W8T A;  1O8M A;  4XN3 A;  1X0C A;  1BHE A;  4OJP A;  2O1D A;  1KTW A;  3VST A;  1DBO A;  2ODL A;  3B8Y A;  4Z03 A;  3VMW A;  1IA5 A;  4XLE A;  2VBK A;  1GQ8 A;  3FY3 A;  4I84 A;  1CZF A;  1NHC A;  3WWG A;  4OJO A;  2VBM A;  4W8R A;  4PMH A;  1O8G A;  1PLU A;  1RMG A;  2NTP A;  4AVZ A;  3GRH A;  4U4B A;  1QCX A;  1K5C A;  2IQ7 A;  2NSP A;  1O8L A;  3LMW A;  4XLC A;  2INU A;  2PYH A;  3GQ9 A;  2Z8G A;  2QY1 A;  4OJ5 A;  4XOR A;  2NT9 A;  2INV A;  3GQ8 A;  4W8Q A;  2VJI A;  1JRG A;  4XQF A;  2VJJ A;  4URR A;  4XMY A;  1BN8 A;  3GQA A;  1O8I A;  1WMR A;  4OZY A;  1PXZ A;  2NT6 A;  4XON A;  2O0V A;  1OOC A;  1RWR A;  4MXN A;  4YZ0 A;  4YZQ A; 
#chains in the Genus database with same CATH topology
 2QX3 A;  3JX8 A;  4NK6 A;  1O8E A;  2BM6 A;  2BM4 A;  1RU4 A;  4KH3 A;  4XR6 A;  1EZG A;  4YFO A;  3ML3 A;  1AIR A;  4YC5 A;  3KRG A;  4XOP A;  1QA3 A;  3SQV A;  1OFL A;  3ZPP A;  4XLF A;  2B0R A;  1O8J A;  2VFP A;  1LLZ A;  3VSU A;  3VSV A;  4XLA A;  3ZSC A;  1KCD A;  4XKW A;  2X6Y A;  4XOT A;  2O04 A;  1VBL A;  2O0W A;  4Z05 A;  4XN0 A;  2X6W A;  1IDJ A;  3GQ7 A;  3VMV A;  4Z06 A;  2PYG A;  1OFM A;  3SY2 A;  4MR0 A;  2G0Y A;  4YZQ A;  1H80 A;  2XT2 A;  3SUC A;  1OGM X;  3UW0 A;  2VFO A;  4EW9 A;  1O8K A;  4XM3 A;  1KCC A;  5C1E A;  1TSP A;  3JUR A;  1O8H A;  3LJY A;  2BX6 A;  1CLW A;  1EE6 A;  1HF2 A;  3BH7 B;  1O88 A;  2XC1 A;  2IOU G;  3SYJ A;  1EA0 A;  5DNS A;  3NAW A;  1XG2 A;  1OGO X;  1HG8 A;  1WXR A;  4XL9 A;  2O17 A;  2NTB A;  2XTW A;  1IDK A;  4W8S A;  4YCQ A;  5C1C A;  5AMV A;  2BSP A;  2NST A;  4XLH A;  2NZM A;  2QYU A;  3B90 A;  1TYU A;  1DBG A;  5JLV C;  1QRB A;  2VBE A;  2X85 A;  1IB4 A;  2YUH A;  1JTA A;  4OJL A;  2UVE A;  4U49 A;  2QXZ A;  2QZA A;  1QJV A;  3PET A;  3B4N A;  4XKV A;  1K8F A;  1TYW A;  4HWV A;  1O8F A;  2W7Z A;  4OZZ A;  4YEL A;  1OFD A;  3AK5 A;  2VFQ A;  4V02 C;  3EQO A;  2VFM A;  4XNF A;  4YZX A;  3T9G A;  2NTQ A;  2EWE A;  2X6X A;  4YEJ A;  2X3H A;  4YZA A;  2PEC A;  3EQN A;  3PSZ A;  4OJ6 A;  1QRC A;  2UVF A;  3LYC A;  4NK8 A;  4C2L A;  1PE9 A;  1O8D A;  3PSS A;  1DAB A;  4W8T A;  1O8M A;  4XN3 A;  1X0C A;  1BHE A;  2F3L A;  4OJP A;  2O1D A;  1KTW A;  3VST A;  1DBO A;  2ODL A;  3B8Y A;  4Z03 A;  3SZE A;  3VMW A;  1IA5 A;  2BM5 A;  4XLE A;  2VBK A;  2XTY A;  1GQ8 A;  4OM9 A;  1QQ1 A;  3FY3 A;  4I84 A;  1CZF A;  1NHC A;  1K4Z A;  3WWG A;  4OJO A;  1QA2 A;  2VBM A;  1L1I A;  4W8R A;  1OFE A;  4PMH A;  1O8G A;  1PLU A;  1RMG A;  2NTP A;  4AVZ A;  3NB2 A;  3GRH A;  4U4B A;  1LLW A;  1QCX A;  3H09 A;  1K5C A;  2IQ7 A;  2NSP A;  3TH0 A;  1O8L A;  1LM1 A;  3LMW A;  4XLC A;  2INU A;  3N90 A;  1KQ5 A;  5JMC B;  2PYH A;  3GQ9 A;  2Z8G A;  2J8I A;  2QY1 A;  4OPW A;  3RIQ A;  4OJ5 A;  4XOR A;  2NT9 A;  2INV A;  3GQ8 A;  2VFN A;  4JRA C;  4W8Q A;  2VJI A;  1JRG A;  4YEI A;  4XQF A;  2VJJ A;  4URR A;  4XMY A;  1BN8 A;  3GQA A;  1QA1 A;  1TYV A;  2O6W A;  1O8I A;  1TYX A;  2XT4 A;  1WMR A;  4OZY A;  2V5I A;  2J8K A;  1PXZ A;  2NT6 A;  4XON A;  2O0V A;  1OOC A;  3N6Z A;  3P4G A;  3BH6 B;  3DU1 X;  2XTX A;  1RWR A;  4MXN A;  4YZ0 A;  2BM7 A;  4YDT A; 
#chains in the Genus database with same CATH homology
 2QX3 A;  4NK6 A;  1O8E A;  1RU4 A;  4XR6 A;  1AIR A;  3KRG A;  4XOP A;  1OFL A;  3ZPP A;  4XLF A;  1O8J A;  3VSU A;  3VSV A;  4XLA A;  3ZSC A;  1KCD A;  4XKW A;  2X6Y A;  4XOT A;  2O04 A;  1VBL A;  2O0W A;  4Z05 A;  4XN0 A;  2X6W A;  1IDJ A;  3GQ7 A;  3VMV A;  4Z06 A;  2PYG A;  1OFM A;  4MR0 A;  1H80 A;  3SUC A;  1OGM X;  3UW0 A;  4EW9 A;  1O8K A;  4XM3 A;  1KCC A;  5C1E A;  3JUR A;  1O8H A;  1EE6 A;  1O88 A;  1XG2 A;  1OGO X;  1HG8 A;  4XL9 A;  2O17 A;  2NTB A;  1IDK A;  4W8S A;  5C1C A;  5AMV A;  2BSP A;  2NST A;  4XLH A;  2NZM A;  3B90 A;  1DBG A;  2VBE A;  2X85 A;  1IB4 A;  1JTA A;  4OJL A;  2UVE A;  4U49 A;  2QXZ A;  1QJV A;  3B4N A;  4XKV A;  4HWV A;  1O8F A;  4OZZ A;  4YEL A;  3EQO A;  4XNF A;  4YZX A;  3T9G A;  2NTQ A;  2EWE A;  2X6X A;  4YEJ A;  2X3H A;  4YZA A;  2PEC A;  3EQN A;  4OJ6 A;  2UVF A;  4C2L A;  4NK8 A;  1PE9 A;  1O8D A;  4W8T A;  1O8M A;  4XN3 A;  1X0C A;  1BHE A;  4OJP A;  2O1D A;  1KTW A;  3VST A;  1DBO A;  2ODL A;  3B8Y A;  4Z03 A;  3VMW A;  1IA5 A;  4XLE A;  2VBK A;  1GQ8 A;  3FY3 A;  4I84 A;  1CZF A;  1NHC A;  3WWG A;  4OJO A;  2VBM A;  4W8R A;  4PMH A;  1O8G A;  1PLU A;  1RMG A;  2NTP A;  4AVZ A;  3GRH A;  4U4B A;  1QCX A;  1K5C A;  2IQ7 A;  2NSP A;  1O8L A;  3LMW A;  4XLC A;  2INU A;  2PYH A;  3GQ9 A;  2Z8G A;  2QY1 A;  4OJ5 A;  4XOR A;  2NT9 A;  2INV A;  3GQ8 A;  4W8Q A;  2VJI A;  1JRG A;  4XQF A;  2VJJ A;  4URR A;  4XMY A;  1BN8 A;  3GQA A;  1O8I A;  1WMR A;  4OZY A;  1PXZ A;  2NT6 A;  4XON A;  2O0V A;  1OOC A;  1RWR A;  4MXN A;  4YZ0 A;  4YZQ A; 
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