3UIT | Genus

Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	256
structure length	256
Chain Sequence	EKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSHIPLEVLFQGPVKILEIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAITVHMNKASPPFPLISNAQDLAQEVQTVLKPVHHKEGQELTALLNTPHIQALLLAHDKVAEQEMGGGLEVLFQGPALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDIT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d0333a7e2ceffa6962ff623/pdb.gz

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell adhesion
source organism	Mus musculus
publication title	Structure of an L27 domain heterotrimer from cell polarity complex Patj/Pals1/Mals2 reveals mutually independent L27 domain assembly mode pubmed doi rcsb
molecule keywords	InaD-like protein, MAGUK p55 subfamily member 5, Protein lin
total genus	92
structure length	256
sequence length	256
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2011-11-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09045	L27_2	L27_2
A	PF09060	L27_N	L27_N

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.460	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	3uitA02
1.20.1440.360	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	de novo design (two linked rop proteins)	3uitA01

3UITA
chains in the Genus database with same CATH superfamily

4G6QA 3T49A 4AZ5A 4Z7HA 4HEA1 1QWUA 3Q8DA 1I49A 3QNJA 2LXYA 4AZCB 2A2CA 2KKMA 2F7PA 2WINM 4FZOA 3BVVA 1HTYA 4IWOA 3T47A 4I1QA 1GN9A 4JNEA 4E3CA 3BLBA 2IP6A 2YLAA 4H6IA 4B9QA 2GAFD 4EZPA 3CKDA 3DX0A 4M0MA 3I2WA 2Z0OA 3DPQA 3ER8C 2P22B 3P23A 2YIVX 3T4AG 2K19A 5C5BB 3UITA 4O1PA 1MJGA 2F7OA 2FICA 3VA9A 3ER9B 3KAVA 2V0OA 2YIAA 3BVWA 3VEAA 3B51X 4EZXA 4UDYX 1TQTA 2OW7A 3EJUA 3B53X 3D4YA 2WYHA 4JNFA 1E1DA 4H8SA 2RAJA 2JAEA 2F66B 1X03A 2YIBA 3I04A 3VEBA 4D8JA 2MJFB 2JNSA 1WDZA 3IAM1 3T48A 2JB3A 3KAWA 4AZIA 3L3PA 4IM0A 2Q13A 1OA1A 3D4ZA 3F7WA 4JCVE 4JWDA 2XTQA 3OK8A 2D4CA 2X5CA 4HYBA 2Z0VA 4ATMA 2OBMA 1U5KA 3ERCC 2YFBA 2F7RA 4FZSA 3KDRA 3DYTA 3DO9A 3OHXM 4EZZA 3BUDA 1I4LA 1YO7A 1LQ7A 4JN4A 3DDFA 3LJ1A 4WPEA 2YFAA 3DX2A 3HAHA 3ACOA 1HWWA 2MI7A 3EJRA 4EZNA 3LVTA 4R5GA 4EZWA 2WYIA 1Y2OA 4IM3A 4R5KA 4JWCA 1DKZA 2RT6A 2QFFA 3LMFA 4DYLA 3BVXA 4G75A 5FLEX 2F1BA 3FVVA 3F4MA 3SOGA 2HGKA 4KIKA 3HAJA 4HR1A 4AVMA 4PL3A 2C08A 4YZDA 2JB2A 2YL5A 2XMXA 3I01A 1ZYLA 2FUG1 3EJTA 1W9MA 2OBLA 2FEFA 3BUQA 3SYVA 4EZOA 2PY6A 2KHOA 4AKVA 3DPOA 2QXLA 1X04A 1E9VA 1HXKA 2CAZB 3O3NB 2YL6A 3DDGA 2BL7A 4F00A 2BL8A 3GI7A 4IWPA 1E2UA 4EZUA 1U00A 2LM0A 3DX3A 2RAKA 2ND1A 3O3OB 4G76A 3LLLA 1UPXA 3BVUA 3CV5A 2RLDA 1SU8A 3PLTA 5E84A 2OO2A 1TQVA 3L0IA 4DCNC 4OAVB 3DA3A 1URUA 3EJPA 4R5IA 3FNBA 2D1LA 3Q0KA 3D2EA 3HAIA 4EZYA 1TQWA 3DA4A 3Q84A 1I4TA 2YI8A 3D52A 2F7QA 1SJ8A 3QE6A 3QWEA 2V1CC 2YKTA 2QSBA 2JNKA 4EZRA 2YL9A 4HFVA 3SDJA 3BVTA 2EX3B 2EWFA 2L1LB 2ETDA 2YLLA 3AJFA 4JWEA 4PO2A 4F01A 2JBWA 4PL5A 4KIKB 4HR1B 3QNIA 4GXTA 4DWLA 2F18A 4EZQA 2X3VA 3B55A 2Z0NA 3DX1A 4FM3A 2QZGA 2A2DA 3L3OM 3A98A 4E81A 3RPMA 4JL9A 3D51A 1GNTA 2FU2A 1O7DB 4OAUC 3I9V1 2GSCA 2EFKA 2Z8YA 3CVRA 4IWQA 3BUPA 3LJ0A 4EZSA 3CAZA 4JWIA 3D2FA 4NV2A 3ABHA 1YWMA 4IW0A 5KBPA 2YL8A 4AZ6A 2EFLA 1QX1A 4EZVA 2QGMA 4UDXX 2E8GA 4AZBA 3D50A 3FBVA 2RIOA 4AZGA 4NQIA 2N3KA 3CZSA 3EJQA 4NSWA 4PL4A 1O7DC 3KP9A 1R5EA 2NCZA 4AZCA 3RV1A 3DX4A 4IM2A 4R5LA 2GA9D 2YI9A 1W3SA 2F1AA 4H6HA 3BUIA 1ZWWA 3CZNA 3O3MB 3T46A 1JQKA 1OA0A 4EZTA 2XTRA 4BNEA 3BUBA 4O1OA 4AS2A 1PS3A 5LNK1 3ZEDA 1TQUA 2FYVA 5C5BA 4NPHA 3C7NA 2GF4A 4YZCA 4FZPA 4HY9A 1R34A 3OWGA 1DKYA 2PMRA 4AZ7A 2RAIA 1R33A 2X3XA 1QWNA 5FIGA 3LJ2A 2JB1A 4Z7GA 2QKWA 4U6RA 4AS3A 1DKXA 3FD9A 4NV5A 1JQOA 3M3WA 2OW6A 1I4DA 1OAOA 3G9GA 3QA8A 2O0I1 3EJSA 2ZRRA 2ALWA 3JSBA 4YZ9A 2OZNB 3DPPA 1GNLA 2ZW3A 2RADA 2V6EA 4WPCA 2ELBA 2ND0A 4Q9VA 3B52X 1SU6A 2X3WA 5HGIA 2Q12A 1TQSA 2F6MB 1SU7A 3I39X 3VKHA 4AZHA 4I1TA 4R5JA 1SUFA 2ZXQA 5TKYA 3RV0A 1TDPA 3IAS1 4JLCA
chains in the Genus database with same CATH topology

3D2EA 4EZYA 2YFAA 4G6QA 3T49A 4PL4A 3KP9A 3DA4A 4Z7HA 4HEA1 3Q8DA 2NCZA 3QNJA 3RV1A 2YI8A 4IM2A 4EZNA 1SJ8A 2A2CA 4R5LA 4R5GA 2GA9D 4EZWA 4IM3A 4R5KA 2KKMA 2WINM 2YI9A 1W3SA 2V1CC 4JWCA 4IWOA 4H6HA 3T47A 3O3MB 1DKZA 3T46A 1GN9A 2RT6A 4EZRA 4JNEA 1JQKA 1OA0A 2QFFA 3LMFA 4E3CA 4EZTA 2IP6A 4HFVA 4H6IA 4B9QA 3SDJA 2XTRA 4G75A 2GAFD 5FLEX 4O1OA 4EZPA 2EX3B 4AS2A 2EWFA 2L1LB 4M0MA 3F4MA 5LNK1 3ZEDA 3DPQA 3ER8C 2P22B 3P23A 2YIVX 4NPHA 3T4AG 2K19A 4JWEA 3AJFA 4PO2A 4KIKA 4F01A 3UITA 3C7NA 4PL5A 4HR1A 4O1PA 1MJGA 4KIKB 4YZCA 4HR1B 4HY9A 3ER9B 3VA9A 3KAVA 3OWGA 2YIAA 4GXTA 3VEAA 4DWLA 1DKYA 4PL3A 4EZQA 4YZDA 3B51X 2JB2A 4EZXA 4UDYX 5FIGA 4FM3A 2JB1A 3B53X 3LJ2A 2XMXA 4Z7GA 2A2DA 3I01A 1ZYLA 4U6RA 2FUG1 3L3OM 4AS3A 1DKXA 4JNFA 3A98A 1E1DA 1W9MA 3FD9A 4E81A 4NV5A 2JAEA 2F66B 2YIBA 2OBLA 1OAOA 3I04A 3VEBA 4D8JA 3QA8A 4JL9A 4EZOA 2PY6A 2KHOA 2MJFB 2JNSA 2ZRRA 3IAM1 1GNTA 3DPOA 3T48A 2QXLA 3JSBA 3I9V1 2JB3A 4OAUC 4YZ9A 3DPPA 3KAWA 1E9VA 4IM0A 2CAZB 1OA1A 2Z8YA 4JCVE 1GNLA 3F7WA 3O3NB 4JWDA 4IWQA 4F00A 2XTQA 3GI7A 4IWPA 2X5CA 1E2UA 4HYBA 3LJ0A 2V6EA 4EZSA 4EZUA 1U5KA 2OBMA 1U00A 2LM0A 4JWIA 3D2FA 4NV2A 2ND0A 4Q9VA 4IW0A 3ERCC 2YFBA 2ND1A 3O3OB 3B52X 1SU6A 5HGIA 4G76A 3KDRA 3DO9A 2F6MB 1SU7A 4EZVA 1UPXA 3OHXM 3I39X 4EZZA 4UDXX 3VKHA 1SU8A 5E84A 4I1TA 2E8GA 4R5JA 1SUFA 1YO7A 3L0IA 4OAVB 3DA3A 3FBVA 2RIOA 5TKYA 4JN4A 4R5IA 3RV0A 2N3KA 3IAS1 3LJ1A 4JLCA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3UIT A; 
#chains in the Genus database with same CATH topology
 4G6Q A;  3T49 A;  4AZ5 A;  4Z7H A;  4HEA 1;  1QWU A;  3Q8D A;  1I49 A;  3QNJ A;  2LXY A;  4AZC B;  2A2C A;  2KKM A;  2F7P A;  2WIN M;  4FZO A;  3BVV A;  1HTY A;  4IWO A;  3T47 A;  4I1Q A;  1GN9 A;  4JNE A;  4E3C A;  3BLB A;  2IP6 A;  2YLA A;  4H6I A;  4B9Q A;  2GAF D;  4EZP A;  3CKD A;  3DX0 A;  4M0M A;  3I2W A;  2Z0O A;  3DPQ A;  3ER8 C;  2P22 B;  3P23 A;  2YIV X;  3T4A G;  2K19 A;  5C5B B;  3UIT A;  4O1P A;  1MJG A;  2F7O A;  2FIC A;  3VA9 A;  3ER9 B;  3KAV A;  2V0O A;  2YIA A;  3BVW A;  3VEA A;  3B51 X;  4EZX A;  4UDY X;  1TQT A;  2OW7 A;  3EJU A;  3B53 X;  3D4Y A;  2WYH A;  4JNF A;  1E1D A;  4H8S A;  2RAJ A;  2JAE A;  2F66 B;  1X03 A;  2YIB A;  3I04 A;  3VEB A;  4D8J A;  2MJF B;  2JNS A;  1WDZ A;  3IAM 1;  3T48 A;  2JB3 A;  3KAW A;  4AZI A;  3L3P A;  4IM0 A;  2Q13 A;  1OA1 A;  3D4Z A;  3F7W A;  4JCV E;  4JWD A;  2XTQ A;  3OK8 A;  2D4C A;  2X5C A;  4HYB A;  2Z0V A;  4ATM A;  2OBM A;  1U5K A;  3ERC C;  2YFB A;  2F7R A;  4FZS A;  3KDR A;  3DYT A;  3DO9 A;  3OHX M;  4EZZ A;  3BUD A;  1I4L A;  1YO7 A;  1LQ7 A;  4JN4 A;  3DDF A;  3LJ1 A;  4WPE A;  2YFA A;  3DX2 A;  3HAH A;  3ACO A;  1HWW A;  2MI7 A;  3EJR A;  4EZN A;  3LVT A;  4R5G A;  4EZW A;  2WYI A;  1Y2O A;  4IM3 A;  4R5K A;  4JWC A;  1DKZ A;  2RT6 A;  2QFF A;  3LMF A;  4DYL A;  3BVX A;  4G75 A;  5FLE X;  2F1B A;  3FVV A;  3F4M A;  3SOG A;  2HGK A;  4KIK A;  3HAJ A;  4HR1 A;  4AVM A;  4PL3 A;  2C08 A;  4YZD A;  2JB2 A;  2YL5 A;  2XMX A;  3I01 A;  1ZYL A;  2FUG 1;  3EJT A;  1W9M A;  2OBL A;  2FEF A;  3BUQ A;  3SYV A;  4EZO A;  2PY6 A;  2KHO A;  4AKV A;  3DPO A;  2QXL A;  1X04 A;  1E9V A;  1HXK A;  2CAZ B;  3O3N B;  2YL6 A;  3DDG A;  2BL7 A;  4F00 A;  2BL8 A;  3GI7 A;  4IWP A;  1E2U A;  4EZU A;  1U00 A;  2LM0 A;  3DX3 A;  2RAK A;  2ND1 A;  3O3O B;  4G76 A;  3LLL A;  1UPX A;  3BVU A;  3CV5 A;  2RLD A;  1SU8 A;  3PLT A;  5E84 A;  2OO2 A;  1TQV A;  3L0I A;  4DCN C;  4OAV B;  3DA3 A;  1URU A;  3EJP A;  4R5I A;  3FNB A;  2D1L A;  3Q0K A;  3D2E A;  3HAI A;  4EZY A;  1TQW A;  3DA4 A;  3Q84 A;  1I4T A;  2YI8 A;  3D52 A;  2F7Q A;  1SJ8 A;  3QE6 A;  3QWE A;  2V1C C;  2YKT A;  2QSB A;  2JNK A;  4EZR A;  2YL9 A;  4HFV A;  3SDJ A;  3BVT A;  2EX3 B;  2EWF A;  2L1L B;  2ETD A;  2YLL A;  3AJF A;  4JWE A;  4PO2 A;  4F01 A;  2JBW A;  4PL5 A;  4KIK B;  4HR1 B;  3QNI A;  4GXT A;  4DWL A;  2F18 A;  4EZQ A;  2X3V A;  3B55 A;  2Z0N A;  3DX1 A;  4FM3 A;  2QZG A;  2A2D A;  3L3O M;  3A98 A;  4E81 A;  3RPM A;  4JL9 A;  3D51 A;  1GNT A;  2FU2 A;  1O7D B;  4OAU C;  3I9V 1;  2GSC A;  2EFK A;  2Z8Y A;  3CVR A;  4IWQ A;  3BUP A;  3LJ0 A;  4EZS A;  3CAZ A;  4JWI A;  3D2F A;  4NV2 A;  3ABH A;  1YWM A;  4IW0 A;  5KBP A;  2YL8 A;  4AZ6 A;  2EFL A;  1QX1 A;  4EZV A;  2QGM A;  4UDX X;  2E8G A;  4AZB A;  3D50 A;  3FBV A;  2RIO A;  4AZG A;  4NQI A;  2N3K A;  3CZS A;  3EJQ A;  4NSW A;  4PL4 A;  1O7D C;  3KP9 A;  1R5E A;  2NCZ A;  4AZC A;  3RV1 A;  3DX4 A;  4IM2 A;  4R5L A;  2GA9 D;  2YI9 A;  1W3S A;  2F1A A;  4H6H A;  3BUI A;  1ZWW A;  3CZN A;  3O3M B;  3T46 A;  1JQK A;  1OA0 A;  4EZT A;  2XTR A;  4BNE A;  3BUB A;  4O1O A;  4AS2 A;  1PS3 A;  5LNK 1;  3ZED A;  1TQU A;  2FYV A;  5C5B A;  4NPH A;  3C7N A;  2GF4 A;  4YZC A;  4FZP A;  4HY9 A;  1R34 A;  3OWG A;  1DKY A;  2PMR A;  4AZ7 A;  2RAI A;  1R33 A;  2X3X A;  1QWN A;  5FIG A;  3LJ2 A;  2JB1 A;  4Z7G A;  2QKW A;  4U6R A;  4AS3 A;  1DKX A;  3FD9 A;  4NV5 A;  1JQO A;  3M3W A;  2OW6 A;  1I4D A;  1OAO A;  3G9G A;  3QA8 A;  2O0I 1;  3EJS A;  2ZRR A;  2ALW A;  3JSB A;  4YZ9 A;  2OZN B;  3DPP A;  1GNL A;  2ZW3 A;  2RAD A;  2V6E A;  4WPC A;  2ELB A;  2ND0 A;  4Q9V A;  3B52 X;  1SU6 A;  2X3W A;  5HGI A;  2Q12 A;  1TQS A;  2F6M B;  1SU7 A;  3I39 X;  3VKH A;  4AZH A;  4I1T A;  4R5J A;  1SUF A;  2ZXQ A;  5TKY A;  3RV0 A;  1TDP A;  3IAS 1;  4JLC A; 
#chains in the Genus database with same CATH homology
 3D2E A;  4EZY A;  2YFA A;  4G6Q A;  3T49 A;  4PL4 A;  3KP9 A;  3DA4 A;  4Z7H A;  4HEA 1;  3Q8D A;  2NCZ A;  3QNJ A;  3RV1 A;  2YI8 A;  4IM2 A;  4EZN A;  1SJ8 A;  2A2C A;  4R5L A;  4R5G A;  2GA9 D;  4EZW A;  4IM3 A;  4R5K A;  2KKM A;  2WIN M;  2YI9 A;  1W3S A;  2V1C C;  4JWC A;  4IWO A;  4H6H A;  3T47 A;  3O3M B;  1DKZ A;  3T46 A;  1GN9 A;  2RT6 A;  4EZR A;  4JNE A;  1JQK A;  1OA0 A;  2QFF A;  3LMF A;  4E3C A;  4EZT A;  2IP6 A;  4HFV A;  4H6I A;  4B9Q A;  3SDJ A;  2XTR A;  4G75 A;  2GAF D;  5FLE X;  4O1O A;  4EZP A;  2EX3 B;  4AS2 A;  2EWF A;  2L1L B;  4M0M A;  3F4M A;  5LNK 1;  3ZED A;  3DPQ A;  3ER8 C;  2P22 B;  3P23 A;  2YIV X;  4NPH A;  3T4A G;  2K19 A;  4JWE A;  3AJF A;  4PO2 A;  4KIK A;  4F01 A;  3UIT A;  3C7N A;  4PL5 A;  4HR1 A;  4O1P A;  1MJG A;  4KIK B;  4YZC A;  4HR1 B;  4HY9 A;  3ER9 B;  3VA9 A;  3KAV A;  3OWG A;  2YIA A;  4GXT A;  3VEA A;  4DWL A;  1DKY A;  4PL3 A;  4EZQ A;  4YZD A;  3B51 X;  2JB2 A;  4EZX A;  4UDY X;  5FIG A;  4FM3 A;  2JB1 A;  3B53 X;  3LJ2 A;  2XMX A;  4Z7G A;  2A2D A;  3I01 A;  1ZYL A;  4U6R A;  2FUG 1;  3L3O M;  4AS3 A;  1DKX A;  4JNF A;  3A98 A;  1E1D A;  1W9M A;  3FD9 A;  4E81 A;  4NV5 A;  2JAE A;  2F66 B;  2YIB A;  2OBL A;  1OAO A;  3I04 A;  3VEB A;  4D8J A;  3QA8 A;  4JL9 A;  4EZO A;  2PY6 A;  2KHO A;  2MJF B;  2JNS A;  2ZRR A;  3IAM 1;  1GNT A;  3DPO A;  3T48 A;  2QXL A;  3JSB A;  3I9V 1;  2JB3 A;  4OAU C;  4YZ9 A;  3DPP A;  3KAW A;  1E9V A;  4IM0 A;  2CAZ B;  1OA1 A;  2Z8Y A;  4JCV E;  1GNL A;  3F7W A;  3O3N B;  4JWD A;  4IWQ A;  4F00 A;  2XTQ A;  3GI7 A;  4IWP A;  2X5C A;  1E2U A;  4HYB A;  3LJ0 A;  2V6E A;  4EZS A;  4EZU A;  1U5K A;  2OBM A;  1U00 A;  2LM0 A;  4JWI A;  3D2F A;  4NV2 A;  2ND0 A;  4Q9V A;  4IW0 A;  3ERC C;  2YFB A;  2ND1 A;  3O3O B;  3B52 X;  1SU6 A;  5HGI A;  4G76 A;  3KDR A;  3DO9 A;  2F6M B;  1SU7 A;  4EZV A;  1UPX A;  3OHX M;  3I39 X;  4EZZ A;  4UDX X;  3VKH A;  1SU8 A;  5E84 A;  4I1T A;  2E8G A;  4R5J A;  1SUF A;  1YO7 A;  3L0I A;  4OAV B;  3DA3 A;  3FBV A;  2RIO A;  5TKY A;  4JN4 A;  4R5I A;  3RV0 A;  2N3K A;  3IAS 1;  3LJ1 A;  4JLC A;

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similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3UITA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations