The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
92
|
sequence length |
256
|
structure length |
256
|
Chain Sequence |
EKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSHIPLEVLFQGPVKILEIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAITVHMNKASPPFPLISNAQDLAQEVQTVLKPVHHKEGQELTALLNTPHIQALLLAHDKVAEQEMGGGLEVLFQGPALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDIT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of an L27 domain heterotrimer from cell polarity complex Patj/Pals1/Mals2 reveals mutually independent L27 domain assembly mode
pubmed doi rcsb |
| molecule tags |
Cell adhesion
|
| source organism |
Mus musculus
|
| molecule keywords |
InaD-like protein, MAGUK p55 subfamily member 5, Protein lin
|
| total genus |
92
|
| structure length |
256
|
| sequence length |
256
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2011-11-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09045 | L27_2 | L27_2 |
| A | PF09060 | L27_N | L27_N |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | ||
| Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | de novo design (two linked rop proteins) |
#chains in the Genus database with same CATH superfamily 3UIT A; #chains in the Genus database with same CATH topology 4JCV E; 5FIG A; 2F7O A; 4AZ6 A; 3D4Z A; 2YIV X; 3BVV A; 4HR1 A; 2X3W A; 4WPE A; 4JN4 A; 4AZB A; 3EJR A; 4R5J A; 2PY6 A; 2RAJ A; 1JQO A; 2F1A A; 3DA3 A; 1GN9 A; 2ND1 A; 1TQW A; 2A2D A; 4FZO A; 3C7N A; 4O1O A; 4AZ5 A; 1X04 A; 4AS3 A; 3QNI A; 3OK8 A; 2FYV A; 4UDY X; 3EJS A; 2X3X A; 1ZYL A; 2V1C C; 4JNE A; 1GNL A; 3F4M A; 3O3M B; 3DPQ A; 2OW7 A; 4AZC B; 4EZS A; 2F1B A; 5C5B B; 2IP6 A; 1QWU A; 3VKH A; 3HAH A; 3VA9 A; 4F00 A; 3BUD A; 4HY9 A; 1TQS A; 4IM3 A; 3I04 A; 2YL5 A; 4EZU A; 2JB1 A; 4JWE A; 2K19 A; 2D4C A; 2OO2 A; 3CZN A; 2JB3 A; 2RIO A; 1WDZ A; 2YL6 A; 4FZP A; 4H6I A; 4NSW A; 4UDX X; 2NCZ A; 2QXL A; 3DX2 A; 1URU A; 2RLD A; 4EZN A; 4YZC A; 4BNE A; 4JNF A; 4YZD A; 1SU7 A; 4AZH A; 4O1P A; 2EWF A; 4FZS A; 4DYL A; 1Y2O A; 3CAZ A; 2WIN M; 3GI7 A; 3BVX A; 2O0I 1; 3OWG A; 1SU8 A; 3Q84 A; 2PMR A; 2EX3 B; 3M3W A; 1TQT A; 4IWO A; 3HAI A; 3ERC C; 4AZC A; 2YLA A; 2LM0 A; 4JLC A; 3IAM 1; 5C5B A; 2ZW3 A; 3LJ0 A; 2GF4 A; 2Z0N A; 1R34 A; 3KAW A; 2ELB A; 1R33 A; 2Z8Y A; 4E81 A; 2MI7 A; 3CV5 A; 3KAV A; 4KIK A; 3DDG A; 4AS2 A; 3RV1 A; 3I9V 1; 4AZG A; 4NPH A; 4YZ9 A; 2QFF A; 1YO7 A; 1QWN A; 3D52 A; 4EZX A; 3EJQ A; 4H8S A; 3CZS A; 3B53 X; 2OW6 A; 3DA4 A; 3PLT A; 3VEB A; 2ZRR A; 4HYB A; 2FUG 1; 1I4L A; 3T48 A; 1W9M A; 4I1Q A; 3B55 A; 3L3O M; 2A2C A; 4G75 A; 1DKZ A; 4Z7G A; 1TQU A; 4EZP A; 2YI8 A; 3SDJ A; 2OZN B; 1ZWW A; 2ALW A; 2WYI A; 4DWL A; 4AZ7 A; 1I4T A; 3DX3 A; 1I49 A; 1E9V A; 3ZED A; 3QNJ A; 3KDR A; 5FLE X; 3D4Y A; 3ER9 B; 5TKY A; 3Q0K A; 1HXK A; 4JWD A; 2FIC A; 3DYT A; 3G9G A; 3UIT A; 3ER8 C; 4G6Q A; 4JWI A; 2YKT A; 3DX1 A; 4OAU C; 2MJF B; 2Z0V A; 3DPO A; 1O7D C; 3BUP A; 1R5E A; 2F7P A; 2XMX A; 3FD9 A; 5KBP A; 3LVT A; 4Z7H A; 2X5C A; 4R5K A; 3LMF A; 4PL4 A; 1X03 A; 2JBW A; 2JNS A; 3O3N B; 3ABH A; 3D51 A; 4ATM A; 4E3C A; 4WPC A; 1W3S A; 4HR1 B; 3FVV A; 2HGK A; 2GSC A; 4HEA 1; 1HTY A; 4PL5 A; 3JSB A; 3P23 A; 2XTQ A; 1SJ8 A; 2WYH A; 3QE6 A; 1QX1 A; 3FNB A; 2F18 A; 2C08 A; 2YL9 A; 2RAI A; 2LXY A; 4IW0 A; 4EZZ A; 2FU2 A; 4PO2 A; 1DKX A; 2FEF A; 2RT6 A; 1SU6 A; 2JNK A; 2QSB A; 2D1L A; 4EZT A; 3BUI A; 3BUQ A; 2XTR A; 3LLL A; 4JWC A; 3T49 A; 3QA8 A; 1DKY A; 2KKM A; 2F7Q A; 2QKW A; 4B9Q A; 3D50 A; 1U5K A; 2YIB A; 3OHX M; 3BVW A; 3ACO A; 4IM0 A; 1I4D A; 3EJU A; 3F7W A; 4HFV A; 2CAZ B; 2JAE A; 2Q12 A; 3RV0 A; 4I1T A; 2RAK A; 4NQI A; 2QGM A; 4R5L A; 4FM3 A; 3BVT A; 3RPM A; 4DCN C; 3IAS 1; 3CVR A; 4U6R A; 3I39 X; 1GNT A; 4NV5 A; 2F6M B; 4PL3 A; 4G76 A; 4EZQ A; 2V6E A; 3EJP A; 4EZV A; 2F7R A; 2GA9 D; 3SOG A; 3QWE A; 4M0M A; 1SUF A; 2EFK A; 4Q9V A; 3BVU A; 1MJG A; 2ND0 A; 2OBL A; 1PS3 A; 4OAV B; 3DX0 A; 3DX4 A; 3L0I A; 3VEA A; 3SYV A; 4IWQ A; 3I01 A; 3L3P A; 2Z0O A; 1E2U A; 1LQ7 A; 3FBV A; 4AKV A; 2YIA A; 1TQV A; 4IM2 A; 3O3O B; 2YI9 A; 1TDP A; 2OBM A; 3Q8D A; 3CKD A; 4AVM A; 2YLL A; 2Q13 A; 2KHO A; 4JL9 A; 3DO9 A; 4EZW A; 2X3V A; 1JQK A; 2P22 B; 3T47 A; 3T4A G; 4KIK B; 4EZY A; 2JB2 A; 3BUB A; 3D2F A; 2QZG A; 3I2W A; 1YWM A; 5E84 A; 4R5G A; 1E1D A; 3LJ2 A; 1OA0 A; 2V0O A; 2BL8 A; 3BLB A; 5LNK 1; 3KP9 A; 3EJT A; 3T46 A; 4F01 A; 4EZR A; 3B51 X; 3B52 X; 3LJ1 A; 4AZI A; 3D2E A; 4D8J A; 2ZXQ A; 2BL7 A; 4GXT A; 3DDF A; 1HWW A; 2GAF D; 3HAJ A; 2YL8 A; 1O7D B; 4R5I A; 2E8G A; 1UPX A; 2F66 B; 3AJF A; 3DPP A; 2L1L B; 2RAD A; 3A98 A; 2YFA A; 2YFB A; 2ETD A; 4NV2 A; 4H6H A; 2EFL A; 1OA1 A; 4IWP A; 1OAO A; 1U00 A; 4EZO A; 5HGI A; 2N3K A; #chains in the Genus database with same CATH homology 1MJG A; 3GI7 A; 2ND0 A; 2OBL A; 4JCV E; 5FIG A; 4OAV B; 3L0I A; 2YIV X; 2JNS A; 3O3N B; 3VEA A; 4IWQ A; 3I01 A; 3OWG A; 1SU8 A; 4HR1 A; 1E2U A; 2EX3 B; 4E3C A; 4JN4 A; 3FBV A; 1W3S A; 4HR1 B; 4IWO A; 4R5J A; 2YIA A; 3ERC C; 4HEA 1; 4PL5 A; 3JSB A; 4IM2 A; 2PY6 A; 3P23 A; 3O3O B; 2YI9 A; 2LM0 A; 3DA3 A; 4JLC A; 3IAM 1; 2OBM A; 2XTQ A; 1GN9 A; 1SJ8 A; 3LJ0 A; 3Q8D A; 3KAW A; 4E81 A; 2Z8Y A; 2ND1 A; 2KHO A; 2A2D A; 3C7N A; 3KAV A; 4O1O A; 4KIK A; 4JL9 A; 3DO9 A; 4AS2 A; 4IW0 A; 4EZW A; 3RV1 A; 3I9V 1; 1JQK A; 2P22 B; 3T47 A; 3T4A G; 4EZZ A; 4AS3 A; 4KIK B; 4EZY A; 2JB2 A; 4PO2 A; 1DKX A; 3D2F A; 4NPH A; 2RT6 A; 1SU6 A; 4UDY X; 4YZ9 A; 2QFF A; 1YO7 A; 5E84 A; 4R5G A; 1E1D A; 1ZYL A; 4EZX A; 2V1C C; 3LJ2 A; 4EZT A; 4JNE A; 1GNL A; 3F4M A; 1OA0 A; 3O3M B; 3KP9 A; 5LNK 1; 3DPQ A; 3B53 X; 4EZS A; 3T46 A; 2XTR A; 4F01 A; 4JWC A; 3T49 A; 3QA8 A; 1DKY A; 2KKM A; 3DA4 A; 3VEB A; 2ZRR A; 4HYB A; 4EZR A; 3B51 X; 3B52 X; 2IP6 A; 2FUG 1; 3T48 A; 3VKH A; 3LJ1 A; 3D2E A; 1W9M A; 4B9Q A; 4D8J A; 3L3O M; 1U5K A; 2A2C A; 4G75 A; 2YIB A; 1DKZ A; 3OHX M; 4Z7G A; 4GXT A; 4EZP A; 3VA9 A; 2YI8 A; 4IM0 A; 3SDJ A; 4F00 A; 2GAF D; 4DWL A; 3F7W A; 4HY9 A; 4IM3 A; 4HFV A; 2CAZ B; 2JAE A; 3RV0 A; 4I1T A; 4R5I A; 2E8G A; 1E9V A; 1UPX A; 3I04 A; 2F66 B; 3ZED A; 3QNJ A; 3KDR A; 5FLE X; 3AJF A; 3DPP A; 2L1L B; 4EZU A; 2JB1 A; 4PL4 A; 3A98 A; 4JWE A; 2K19 A; 4R5L A; 3ER9 B; 4FM3 A; 2YFA A; 2YFB A; 5TKY A; 2JB3 A; 2RIO A; 4JWD A; 3IAS 1; 3UIT A; 4NV2 A; 3I39 X; 3ER8 C; 4G6Q A; 4U6R A; 4JWI A; 1GNT A; 4H6I A; 4UDX X; 2F6M B; 4NV5 A; 2NCZ A; 4H6H A; 4OAU C; 2MJF B; 4PL3 A; 4G76 A; 4EZQ A; 2QXL A; 2V6E A; 4EZV A; 3DPO A; 2GA9 D; 4EZN A; 4YZC A; 1OA1 A; 4IWP A; 1OAO A; 4JNF A; 4YZD A; 1SU7 A; 1U00 A; 4EZO A; 2XMX A; 4M0M A; 3FD9 A; 4O1P A; 1SUF A; 2EWF A; 4Q9V A; 5HGI A; 4Z7H A; 2X5C A; 4R5K A; 3LMF A; 2WIN M; 2N3K A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
