3UW0 | Genus

Total Genus 103

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	103
sequence length	320
structure length	320
Chain Sequence	FSSINAALKSAPKDDTPFIIFLKNGVYTERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTKEPGVPANSFALGRPWHPTTTFADGRYADPAAIGQSVFINTTMDDHIYGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPGAAINEGRRQLSAEQLKAFTLPMIFPDWAV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Yersinia enterocolitica subsp. enterocolitica
publication title	Structure of a pectin methylesterase from Yersinia enterocolitica. pubmed doi rcsb
molecule keywords	pectinesterase
total genus	103
structure length	320
sequence length	320
ec nomenclature	ec 3.1.1.11: Pectinesterase.
pdb deposition date	2011-11-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01095	Pectinesterase	Pectinesterase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	3uw0A00

4OJ6A 4OZZA 4XORA 4XNFA 4XLFA 4Z05A 1AIRA 5AMVA 2IQ7A 2PYGA 2X6XA 2X85A 4OJ5A 2NSPA 4XM3A 4XLHA 2NTBA 1K5CA 4Z06A 1XG2A 1O8LA 4XKWA 4YZAA 1PE9A 1WMRA 4XMYA 2VBMA 1IDJA 4W8RA 1JTAA 1BHEA 4XLCA 3B90A 3T9GA 4C2LA 3FY3A 3GRHA 2Z8GA 4W8SA 4Z03A 1O8KA 2QX3A 3JURA 1GQ8A 2X6YA 3ZPPA 4XR6A 1RMGA 1BN8A 2O1DA 4OJLA 2O0VA 1RU4A 3GQ7A 3GQ8A 1KTWA 4XQFA 3EQNA 3VMVA 2PYHA 1PXZA 1KCDA 1KCCA 1VBLA 4AVZA 1PLUA 4OZYA 2NZMA 4U49A 4NK8A 1CZFA 3SUCA 4URRA 3VSTA 4W8QA 2NT9A 2VJIA 1QJVA 3GQAA 1O8MA 1O8JA 2NTQA 1RWRA 2X6WA 2NSTA 1O88A 4YZ0A 1O8DA 4XONA 4XLEA 4XOTA 1H80A 2BSPA 1DBGA 4YZQA 1HG8A 4PMHA 2VBKA 4W8TA 1X0CA 1EE6A 1JRGA 1OGOX 1O8GA 2O04A 3WWGA 3VSVA 2QY1A 4XL9A 2O0WA 4MXNA 2O17A 1O8EA 4YELA 5C1EA 2PECA 4HWVA 2VBEA 4XN0A 1OFMA 4U4BA 2UVFA 2VJJA 2X3HA 4YZXA 5C1CA 1DBOA 3GQ9A 3B8YA 3LMWA 4OJOA 3VMWA 1OFLA 2EWEA 2UVEA 4XLAA 2NTPA 1NHCA 1OGMX 1O8FA 2ODLA 1OOCA 4XKVA 2INVA 3B4NA 4OJPA 1O8IA 2INUA 1O8HA 3VSUA 3EQOA 1IA5A 2QXZA 4EW9A 1QCXA 4XN3A 4NK6A 4XOPA 4MR0A 4YEJA 4I84A 2NT6A 3ZSCA 3KRGA 1IB4A 1IDKA 3UW0A
chains in the Genus database with same CATH superfamily

4OJ6A 4OZZA 4XORA 4XNFA 1KQ5A 4XLFA 4Z05A 1QRBA 1AIRA 2XTYA 5AMVA 3SYJA 1IDKA 2G0YA 2IQ7A 2PYGA 2X6XA 2X85A 2XT2A 3UW0A 4OJ5A 2YUHA 4YCQA 2NSPA 2VFQA 4XLHA 4XM3A 2NTBA 1K5CA 2VFPA 4Z06A 4YC5A 1QA1A 5JLVC 3BH6B 1XG2A 1O8LA 4XKWA 4YZAA 1EA0A 3BH7B 1WXRA 1PE9A 1WMRA 4XMYA 2VBMA 1IDJA 4W8RA 1JTAA 1BHEA 1HF2A 2F3LA 4XLCA 3AK5A 3B90A 3T9GA 2BM6A 4C2LA 3FY3A 2VFNA 3GRHA 1EZGA 1DABA 4YFOA 2XC1A 2Z8GA 4W8SA 1OFDA 4OM9A 4Z03A 1O8KA 2QX3A 3JURA 4V02C 1GQ8A 2X6YA 3ZPPA 4XR6A 1RMGA 1BN8A 2O1DA 4OJLA 1CLWA 1RU4A 2O0VA 3GQ7A 3N6ZA 3GQ8A 3SZEA 1KTWA 3N90A 3EQNA 4XQFA 3VMVA 1LLZA 2PYHA 1K8FA 1PXZA 3H09A 1KCDA 1KCCA 1VBLA 4AVZA 1PLUA 4OZYA 5DNSA 3PETA 2XT4A 2NZMA 4U49A 4NK8A 1CZFA 4JRAC 2J8KA 3SUCA 4URRA 3VSTA 4YEIA 1TYVA 4W8QA 2QZAA 2NT9A 1QJVA 2VJIA 3GQAA 1O8MA 1TYUA 3TH0A 1O8JA 2NTQA 1RWRA 2O6WA 2X6WA 2NSTA 1O88A 1QA3A 4YZ0A 1O8DA 2BM7A 4XONA 4XLEA 4XOTA 1H80A 2BSPA 1DBGA 2VFMA 4YZQA 1HG8A 5JMCB 3P4GA 4PMHA 2VBKA 3PSZA 1X0CA 4W8TA 1EE6A 1JRGA 1OGOX 1O8GA 2O04A 1LM1A 3WWGA 3RIQA 3JX8A 2XTXA 3VSVA 2QY1A 3NB2A 2O0WA 2VFOA 4XL9A 3PSSA 4MXNA 2O17A 3LJYA 3SQVA 1O8EA 4YELA 2B0RA 5C1EA 4YDTA 2PECA 4HWVA 2VBEA 4XN0A 1K4ZA 1OFMA 4OPWA 4U4BA 2UVFA 1TYXA 2VJJA 2X3HA 4YZXA 5C1CA 1LLWA 2QYUA 1QA2A 1DBOA 3NAWA 3GQ9A 3SY2A 3B8YA 3LMWA 1QRCA 4KH3A 4OJOA 3VMWA 2XTWA 1L1IA 1OFLA 2EWEA 2UVEA 4XLAA 2NTPA 1NHCA 1OGMX 1O8FA 2ODLA 1OOCA 3DU1X 4XKVA 2INVA 2V5IA 3B4NA 1OFEA 1O8IA 2INUA 1O8HA 4OJPA 3EQOA 3VSUA 1QQ1A 1IA5A 3ML3A 1TSPA 2QXZA 4EW9A 1QCXA 4XN3A 4NK6A 2W7ZA 2J8IA 4MR0A 4XOPA 2IOUG 4YEJA 2BX6A 3LYCA 4I84A 2NT6A 2BM5A 3ZSCA 3KRGA 1IB4A 1TYWA 2BM4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4OJ6 A;  4OZZ A;  4XOR A;  4XNF A;  4XLF A;  4Z05 A;  1AIR A;  5AMV A;  2IQ7 A;  2PYG A;  2X6X A;  2X85 A;  4OJ5 A;  2NSP A;  4XM3 A;  4XLH A;  2NTB A;  1K5C A;  4Z06 A;  1XG2 A;  1O8L A;  4XKW A;  4YZA A;  1PE9 A;  1WMR A;  4XMY A;  2VBM A;  1IDJ A;  4W8R A;  1JTA A;  1BHE A;  4XLC A;  3B90 A;  3T9G A;  4C2L A;  3FY3 A;  3GRH A;  2Z8G A;  4W8S A;  4Z03 A;  1O8K A;  2QX3 A;  3JUR A;  1GQ8 A;  2X6Y A;  3ZPP A;  4XR6 A;  1RMG A;  1BN8 A;  2O1D A;  4OJL A;  2O0V A;  1RU4 A;  3GQ7 A;  3GQ8 A;  1KTW A;  4XQF A;  3EQN A;  3VMV A;  2PYH A;  1PXZ A;  1KCD A;  1KCC A;  1VBL A;  4AVZ A;  1PLU A;  4OZY A;  2NZM A;  4U49 A;  4NK8 A;  1CZF A;  3SUC A;  4URR A;  3VST A;  4W8Q A;  2NT9 A;  2VJI A;  1QJV A;  3GQA A;  1O8M A;  1O8J A;  2NTQ A;  1RWR A;  2X6W A;  2NST A;  1O88 A;  4YZ0 A;  1O8D A;  4XON A;  4XLE A;  4XOT A;  1H80 A;  2BSP A;  1DBG A;  4YZQ A;  1HG8 A;  4PMH A;  2VBK A;  4W8T A;  1X0C A;  1EE6 A;  1JRG A;  1OGO X;  1O8G A;  2O04 A;  3WWG A;  3VSV A;  2QY1 A;  4XL9 A;  2O0W A;  4MXN A;  2O17 A;  1O8E A;  4YEL A;  5C1E A;  2PEC A;  4HWV A;  2VBE A;  4XN0 A;  1OFM A;  4U4B A;  2UVF A;  2VJJ A;  2X3H A;  4YZX A;  5C1C A;  1DBO A;  3GQ9 A;  3B8Y A;  3LMW A;  4OJO A;  3VMW A;  1OFL A;  2EWE A;  2UVE A;  4XLA A;  2NTP A;  1NHC A;  1OGM X;  1O8F A;  2ODL A;  1OOC A;  4XKV A;  2INV A;  3B4N A;  4OJP A;  1O8I A;  2INU A;  1O8H A;  3VSU A;  3EQO A;  1IA5 A;  2QXZ A;  4EW9 A;  1QCX A;  4XN3 A;  4NK6 A;  4XOP A;  4MR0 A;  4YEJ A;  4I84 A;  2NT6 A;  3ZSC A;  3KRG A;  1IB4 A;  1IDK A;  3UW0 A; 
#chains in the Genus database with same CATH topology
 4OJ6 A;  4OZZ A;  4XOR A;  4XNF A;  1KQ5 A;  4XLF A;  4Z05 A;  1QRB A;  1AIR A;  2XTY A;  5AMV A;  3SYJ A;  1IDK A;  2G0Y A;  2IQ7 A;  2PYG A;  2X6X A;  2X85 A;  2XT2 A;  3UW0 A;  4OJ5 A;  2YUH A;  4YCQ A;  2NSP A;  2VFQ A;  4XLH A;  4XM3 A;  2NTB A;  1K5C A;  2VFP A;  4Z06 A;  4YC5 A;  1QA1 A;  5JLV C;  3BH6 B;  1XG2 A;  1O8L A;  4XKW A;  4YZA A;  1EA0 A;  3BH7 B;  1WXR A;  1PE9 A;  1WMR A;  4XMY A;  2VBM A;  1IDJ A;  4W8R A;  1JTA A;  1BHE A;  1HF2 A;  2F3L A;  4XLC A;  3AK5 A;  3B90 A;  3T9G A;  2BM6 A;  4C2L A;  3FY3 A;  2VFN A;  3GRH A;  1EZG A;  1DAB A;  4YFO A;  2XC1 A;  2Z8G A;  4W8S A;  1OFD A;  4OM9 A;  4Z03 A;  1O8K A;  2QX3 A;  3JUR A;  4V02 C;  1GQ8 A;  2X6Y A;  3ZPP A;  4XR6 A;  1RMG A;  1BN8 A;  2O1D A;  4OJL A;  1CLW A;  1RU4 A;  2O0V A;  3GQ7 A;  3N6Z A;  3GQ8 A;  3SZE A;  1KTW A;  3N90 A;  3EQN A;  4XQF A;  3VMV A;  1LLZ A;  2PYH A;  1K8F A;  1PXZ A;  3H09 A;  1KCD A;  1KCC A;  1VBL A;  4AVZ A;  1PLU A;  4OZY A;  5DNS A;  3PET A;  2XT4 A;  2NZM A;  4U49 A;  4NK8 A;  1CZF A;  4JRA C;  2J8K A;  3SUC A;  4URR A;  3VST A;  4YEI A;  1TYV A;  4W8Q A;  2QZA A;  2NT9 A;  1QJV A;  2VJI A;  3GQA A;  1O8M A;  1TYU A;  3TH0 A;  1O8J A;  2NTQ A;  1RWR A;  2O6W A;  2X6W A;  2NST A;  1O88 A;  1QA3 A;  4YZ0 A;  1O8D A;  2BM7 A;  4XON A;  4XLE A;  4XOT A;  1H80 A;  2BSP A;  1DBG A;  2VFM A;  4YZQ A;  1HG8 A;  5JMC B;  3P4G A;  4PMH A;  2VBK A;  3PSZ A;  1X0C A;  4W8T A;  1EE6 A;  1JRG A;  1OGO X;  1O8G A;  2O04 A;  1LM1 A;  3WWG A;  3RIQ A;  3JX8 A;  2XTX A;  3VSV A;  2QY1 A;  3NB2 A;  2O0W A;  2VFO A;  4XL9 A;  3PSS A;  4MXN A;  2O17 A;  3LJY A;  3SQV A;  1O8E A;  4YEL A;  2B0R A;  5C1E A;  4YDT A;  2PEC A;  4HWV A;  2VBE A;  4XN0 A;  1K4Z A;  1OFM A;  4OPW A;  4U4B A;  2UVF A;  1TYX A;  2VJJ A;  2X3H A;  4YZX A;  5C1C A;  1LLW A;  2QYU A;  1QA2 A;  1DBO A;  3NAW A;  3GQ9 A;  3SY2 A;  3B8Y A;  3LMW A;  1QRC A;  4KH3 A;  4OJO A;  3VMW A;  2XTW A;  1L1I A;  1OFL A;  2EWE A;  2UVE A;  4XLA A;  2NTP A;  1NHC A;  1OGM X;  1O8F A;  2ODL A;  1OOC A;  3DU1 X;  4XKV A;  2INV A;  2V5I A;  3B4N A;  1OFE A;  1O8I A;  2INU A;  1O8H A;  4OJP A;  3EQO A;  3VSU A;  1QQ1 A;  1IA5 A;  3ML3 A;  1TSP A;  2QXZ A;  4EW9 A;  1QCX A;  4XN3 A;  4NK6 A;  2W7Z A;  2J8I A;  4MR0 A;  4XOP A;  2IOU G;  4YEJ A;  2BX6 A;  3LYC A;  4I84 A;  2NT6 A;  2BM5 A;  3ZSC A;  3KRG A;  1IB4 A;  1TYW A;  2BM4 A; 
#chains in the Genus database with same CATH homology
 4OJ6 A;  4OZZ A;  4XOR A;  4XNF A;  4XLF A;  4Z05 A;  1AIR A;  5AMV A;  2IQ7 A;  2PYG A;  2X6X A;  2X85 A;  4OJ5 A;  2NSP A;  4XM3 A;  4XLH A;  2NTB A;  1K5C A;  4Z06 A;  1XG2 A;  1O8L A;  4XKW A;  4YZA A;  1PE9 A;  1WMR A;  4XMY A;  2VBM A;  1IDJ A;  4W8R A;  1JTA A;  1BHE A;  4XLC A;  3B90 A;  3T9G A;  4C2L A;  3FY3 A;  3GRH A;  2Z8G A;  4W8S A;  4Z03 A;  1O8K A;  2QX3 A;  3JUR A;  1GQ8 A;  2X6Y A;  3ZPP A;  4XR6 A;  1RMG A;  1BN8 A;  2O1D A;  4OJL A;  2O0V A;  1RU4 A;  3GQ7 A;  3GQ8 A;  1KTW A;  4XQF A;  3EQN A;  3VMV A;  2PYH A;  1PXZ A;  1KCD A;  1KCC A;  1VBL A;  4AVZ A;  1PLU A;  4OZY A;  2NZM A;  4U49 A;  4NK8 A;  1CZF A;  3SUC A;  4URR A;  3VST A;  4W8Q A;  2NT9 A;  2VJI A;  1QJV A;  3GQA A;  1O8M A;  1O8J A;  2NTQ A;  1RWR A;  2X6W A;  2NST A;  1O88 A;  4YZ0 A;  1O8D A;  4XON A;  4XLE A;  4XOT A;  1H80 A;  2BSP A;  1DBG A;  4YZQ A;  1HG8 A;  4PMH A;  2VBK A;  4W8T A;  1X0C A;  1EE6 A;  1JRG A;  1OGO X;  1O8G A;  2O04 A;  3WWG A;  3VSV A;  2QY1 A;  4XL9 A;  2O0W A;  4MXN A;  2O17 A;  1O8E A;  4YEL A;  5C1E A;  2PEC A;  4HWV A;  2VBE A;  4XN0 A;  1OFM A;  4U4B A;  2UVF A;  2VJJ A;  2X3H A;  4YZX A;  5C1C A;  1DBO A;  3GQ9 A;  3B8Y A;  3LMW A;  4OJO A;  3VMW A;  1OFL A;  2EWE A;  2UVE A;  4XLA A;  2NTP A;  1NHC A;  1OGM X;  1O8F A;  2ODL A;  1OOC A;  4XKV A;  2INV A;  3B4N A;  4OJP A;  1O8I A;  2INU A;  1O8H A;  3VSU A;  3EQO A;  1IA5 A;  2QXZ A;  4EW9 A;  1QCX A;  4XN3 A;  4NK6 A;  4XOP A;  4MR0 A;  4YEJ A;  4I84 A;  2NT6 A;  3ZSC A;  3KRG A;  1IB4 A;  1IDK A;  3UW0 A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3UW0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations