4C2LA

Crystal structure of endo-xylogalacturonan hydrolase from aspergillus tubingensis
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
372
structure length
372
Chain Sequence
AVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGSTYYLNSVLDLGSCSDCDIQVEGLLKFASDTDYWSGRTAMISVSNVDGLKLRSLTGSGVIDGNGQDAWDLFASDSSYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGGATNVVFSNLKMDANSKSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPSSNYVTVDTISCTGSHGISVGSLGKSSDDSVKNIYVTGATMINSTKAAGIKTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSSFSGTTSDKYDPVVANLDCGADGTCGISISGFDVKAPSGKSEVLCANTPSDLGVTCTSGASG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.
pubmed doi rcsb
molecule keywords ENDO-XYLOGALACTURONAN HYDROLASE A
molecule tags Hydrolase
source organism Aspergillus tubingensis
total genus 149
structure length 372
sequence length 372
ec nomenclature ec 3.2.1.-:
pdb deposition date 2013-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4c2lA00
3GQ9A 3VMWA 2O04A 4U4BA 4W8RA 1GQ8A 4YZQA 1OFMA 1IDKA 3B4NA 4YZ0A 1O8EA 4NK8A 1BHEA 4XM3A 1PXZA 4YEJA 1JRGA 1KTWA 4Z05A 2BSPA 4OJ6A 1VBLA 3JURA 4XORA 2NSPA 3EQOA 4W8TA 1DBOA 2INUA 3GQAA 2X6YA 2X6XA 2NTQA 4NK6A 1IDJA 1X0CA 1JTAA 2Z8GA 2VJJA 2NZMA 1H80A 1XG2A 3B8YA 1KCCA 4AVZA 4OZYA 4Z03A 1HG8A 2PYGA 2QY1A 4XOPA 1IB4A 4U49A 1IA5A 2EWEA 2QX3A 3UW0A 4PMHA 4XN3A 4XOTA 4W8SA 4OJOA 2O0WA 2X6WA 2VJIA 2NT6A 5C1EA 1QJVA 2IQ7A 2VBKA 4XLCA 1O8DA 2PECA 3KRGA 4XLFA 4XN0A 1O8MA 4Z06A 2QXZA 1O8FA 4XQFA 1RWRA 1PLUA 4I84A 1O8KA 3GQ7A 4OJLA 3T9GA 4C2LA 1BN8A 5C1CA 1K5CA 4XONA 1OGMX 1NHCA 4XLEA 1OOCA 1O8JA 1O8LA 5AMVA 4OZZA 2O17A 1AIRA 3WWGA 4W8QA 1CZFA 3GQ8A 1RU4A 4YELA 1OFLA 1WMRA 4EW9A 1O8IA 3EQNA 2NTPA 3ZSCA 1RMGA 4MXNA 1DBGA 3VSTA 4XKVA 2O1DA 3VSUA 3ZPPA 2VBEA 3VMVA 3FY3A 1QCXA 1EE6A 4XNFA 4URRA 1PE9A 2O0VA 2UVEA 2NSTA 1O8GA 1O88A 4YZXA 4MR0A 2NTBA 4XKWA 2ODLA 3SUCA 4YZAA 1KCDA 2X85A 4XMYA 2UVFA 2INVA 3VSVA 2NT9A 1OGOX 4XLAA 2PYHA 4OJPA 4HWVA 3GRHA 4XL9A 4XLHA 4OJ5A 2X3HA 3B90A 1O8HA 2VBMA 4XR6A 3LMWA
chains in the Genus database with same CATH superfamily
3GQ9A 3VMWA 2O04A 1OFDA 3SY2A 4U4BA 2XT2A 4W8RA 1GQ8A 4YZQA 1OFMA 1IDKA 3B4NA 4YZ0A 1O8EA 4NK8A 1BHEA 4XM3A 1PXZA 4YEJA 1JRGA 1KTWA 2W7ZA 4Z05A 1QA1A 2BSPA 4OJ6A 1VBLA 3JURA 2O6WA 4XORA 2VFMA 5DNSA 2BM5A 2NSPA 3AK5A 4OPWA 3EQOA 3RIQA 1TYVA 1K4ZA 4W8TA 3PSSA 1DBOA 2INUA 3GQAA 2X6YA 2YUHA 2X6XA 5JMCB 2XT4A 2NTQA 4NK6A 2IOUG 1IDJA 1X0CA 4YDTA 3NB2A 1JTAA 2Z8GA 1KQ5A 2VJJA 2NZMA 1H80A 1XG2A 3B8YA 1KCCA 3LJYA 4AVZA 4OZYA 4Z03A 1HG8A 2XTXA 2PYGA 1L1IA 2QY1A 2J8KA 3H09A 4XOPA 1IB4A 3TH0A 1LLWA 4U49A 2EWEA 1IA5A 4YFOA 2QX3A 3P4GA 4YCQA 3UW0A 4PMHA 4XN3A 4XOTA 4W8SA 3N6ZA 4OJOA 1TYUA 1EZGA 2VFNA 3JX8A 2O0WA 2X6WA 2F3LA 2XTWA 2VJIA 2NT6A 5C1EA 2IQ7A 1QJVA 2VBKA 2VFOA 3ML3A 1O8DA 2B0RA 2PECA 3KRGA 4XLFA 4XLCA 1O8MA 4XN0A 4Z06A 2QXZA 1O8FA 4XQFA 1LLZA 1RWRA 1PLUA 2BM7A 2V5IA 2XC1A 4I84A 5JLVC 1O8KA 3GQ7A 4OJLA 3T9GA 4C2LA 1BN8A 5C1CA 3PETA 1LM1A 1K5CA 4XONA 4YC5A 1OGMX 1QRBA 1NHCA 2VFPA 4XLEA 4V02C 3NAWA 1OOCA 1O8JA 1O8LA 3SYJA 5AMVA 4OZZA 1QQ1A 2O17A 1AIRA 3WWGA 1QA3A 4W8QA 1OFEA 2QZAA 1CZFA 3GQ8A 2BM4A 1DABA 1EA0A 1RU4A 4YELA 1OFLA 1WMRA 3SZEA 2VFQA 4EW9A 1O8IA 3EQNA 2NTPA 3BH6B 3ZSCA 1WXRA 1HF2A 1RMGA 2G0YA 1DBGA 2QYUA 3LYCA 4MXNA 1QRCA 3VSTA 2BM6A 2J8IA 4XKVA 2BX6A 4JRAC 2O1DA 3PSZA 3VSUA 3SQVA 3ZPPA 2VBEA 3VMVA 2XTYA 3FY3A 4OM9A 1TSPA 1TYWA 1QCXA 1EE6A 3N90A 4XNFA 4URRA 1PE9A 2O0VA 2UVEA 2NSTA 1O8GA 1O88A 1TYXA 3DU1X 1CLWA 3BH7B 4YZXA 4MR0A 2NTBA 4XKWA 2ODLA 3SUCA 1QA2A 1K8FA 4YZAA 1KCDA 2X85A 4XMYA 2UVFA 2INVA 3VSVA 2NT9A 1OGOX 4XLAA 2PYHA 4KH3A 4OJPA 4HWVA 3GRHA 4XL9A 4YEIA 4XLHA 4OJ5A 2X3HA 3B90A 1O8HA 2VBMA 4XR6A 3LMWA
chains in the Genus database with same CATH topology
3GQ9A 3VMWA 2O04A 4U4BA 4W8RA 1GQ8A 4YZQA 1OFMA 1IDKA 3B4NA 4YZ0A 1O8EA 4NK8A 1BHEA 4XM3A 1PXZA 4YEJA 1JRGA 1KTWA 4Z05A 2BSPA 4OJ6A 1VBLA 3JURA 4XORA 2NSPA 3EQOA 4W8TA 1DBOA 2INUA 3GQAA 2X6YA 2X6XA 2NTQA 4NK6A 1IDJA 1X0CA 1JTAA 2Z8GA 2VJJA 2NZMA 1H80A 1XG2A 3B8YA 1KCCA 4AVZA 4OZYA 4Z03A 1HG8A 2PYGA 2QY1A 4XOPA 1IB4A 4U49A 1IA5A 2EWEA 2QX3A 3UW0A 4PMHA 4XN3A 4XOTA 4W8SA 4OJOA 2O0WA 2X6WA 2VJIA 2NT6A 5C1EA 1QJVA 2IQ7A 2VBKA 4XLCA 1O8DA 2PECA 3KRGA 4XLFA 4XN0A 1O8MA 4Z06A 2QXZA 1O8FA 4XQFA 1RWRA 1PLUA 4I84A 1O8KA 3GQ7A 4OJLA 3T9GA 4C2LA 1BN8A 5C1CA 1K5CA 4XONA 1OGMX 1NHCA 4XLEA 1OOCA 1O8JA 1O8LA 5AMVA 4OZZA 2O17A 1AIRA 3WWGA 4W8QA 1CZFA 3GQ8A 1RU4A 4YELA 1OFLA 1WMRA 4EW9A 1O8IA 3EQNA 2NTPA 3ZSCA 1RMGA 4MXNA 1DBGA 3VSTA 4XKVA 2O1DA 3VSUA 3ZPPA 2VBEA 3VMVA 3FY3A 1QCXA 1EE6A 4XNFA 4URRA 1PE9A 2O0VA 2UVEA 2NSTA 1O8GA 1O88A 4YZXA 4MR0A 2NTBA 4XKWA 2ODLA 3SUCA 4YZAA 1KCDA 2X85A 4XMYA 2UVFA 2INVA 3VSVA 2NT9A 1OGOX 4XLAA 2PYHA 4OJPA 4HWVA 3GRHA 4XL9A 4XLHA 4OJ5A 2X3HA 3B90A 1O8HA 2VBMA 4XR6A 3LMWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GQ9 A;  3VMW A;  2O04 A;  4U4B A;  4W8R A;  1GQ8 A;  4YZQ A;  1OFM A;  1IDK A;  3B4N A;  4YZ0 A;  1O8E A;  4NK8 A;  1BHE A;  4XM3 A;  1PXZ A;  4YEJ A;  1JRG A;  1KTW A;  4Z05 A;  2BSP A;  4OJ6 A;  1VBL A;  3JUR A;  4XOR A;  2NSP A;  3EQO A;  4W8T A;  1DBO A;  2INU A;  3GQA A;  2X6Y A;  2X6X A;  2NTQ A;  4NK6 A;  1IDJ A;  1X0C A;  1JTA A;  2Z8G A;  2VJJ A;  2NZM A;  1H80 A;  1XG2 A;  3B8Y A;  1KCC A;  4AVZ A;  4OZY A;  4Z03 A;  1HG8 A;  2PYG A;  2QY1 A;  4XOP A;  1IB4 A;  4U49 A;  1IA5 A;  2EWE A;  2QX3 A;  3UW0 A;  4PMH A;  4XN3 A;  4XOT A;  4W8S A;  4OJO A;  2O0W A;  2X6W A;  2VJI A;  2NT6 A;  5C1E A;  1QJV A;  2IQ7 A;  2VBK A;  4XLC A;  1O8D A;  2PEC A;  3KRG A;  4XLF A;  4XN0 A;  1O8M A;  4Z06 A;  2QXZ A;  1O8F A;  4XQF A;  1RWR A;  1PLU A;  4I84 A;  1O8K A;  3GQ7 A;  4OJL A;  3T9G A;  4C2L A;  1BN8 A;  5C1C A;  1K5C A;  4XON A;  1OGM X;  1NHC A;  4XLE A;  1OOC A;  1O8J A;  1O8L A;  5AMV A;  4OZZ A;  2O17 A;  1AIR A;  3WWG A;  4W8Q A;  1CZF A;  3GQ8 A;  1RU4 A;  4YEL A;  1OFL A;  1WMR A;  4EW9 A;  1O8I A;  3EQN A;  2NTP A;  3ZSC A;  1RMG A;  4MXN A;  1DBG A;  3VST A;  4XKV A;  2O1D A;  3VSU A;  3ZPP A;  2VBE A;  3VMV A;  3FY3 A;  1QCX A;  1EE6 A;  4XNF A;  4URR A;  1PE9 A;  2O0V A;  2UVE A;  2NST A;  1O8G A;  1O88 A;  4YZX A;  4MR0 A;  2NTB A;  4XKW A;  2ODL A;  3SUC A;  4YZA A;  1KCD A;  2X85 A;  4XMY A;  2UVF A;  2INV A;  3VSV A;  2NT9 A;  1OGO X;  4XLA A;  2PYH A;  4OJP A;  4HWV A;  3GRH A;  4XL9 A;  4XLH A;  4OJ5 A;  2X3H A;  3B90 A;  1O8H A;  2VBM A;  4XR6 A;  3LMW A; 
#chains in the Genus database with same CATH topology
 3GQ9 A;  3VMW A;  2O04 A;  1OFD A;  3SY2 A;  4U4B A;  2XT2 A;  4W8R A;  1GQ8 A;  4YZQ A;  1OFM A;  1IDK A;  3B4N A;  4YZ0 A;  1O8E A;  4NK8 A;  1BHE A;  4XM3 A;  1PXZ A;  4YEJ A;  1JRG A;  1KTW A;  2W7Z A;  4Z05 A;  1QA1 A;  2BSP A;  4OJ6 A;  1VBL A;  3JUR A;  2O6W A;  4XOR A;  2VFM A;  5DNS A;  2BM5 A;  2NSP A;  3AK5 A;  4OPW A;  3EQO A;  3RIQ A;  1TYV A;  1K4Z A;  4W8T A;  3PSS A;  1DBO A;  2INU A;  3GQA A;  2X6Y A;  2YUH A;  2X6X A;  5JMC B;  2XT4 A;  2NTQ A;  4NK6 A;  2IOU G;  1IDJ A;  1X0C A;  4YDT A;  3NB2 A;  1JTA A;  2Z8G A;  1KQ5 A;  2VJJ A;  2NZM A;  1H80 A;  1XG2 A;  3B8Y A;  1KCC A;  3LJY A;  4AVZ A;  4OZY A;  4Z03 A;  1HG8 A;  2XTX A;  2PYG A;  1L1I A;  2QY1 A;  2J8K A;  3H09 A;  4XOP A;  1IB4 A;  3TH0 A;  1LLW A;  4U49 A;  2EWE A;  1IA5 A;  4YFO A;  2QX3 A;  3P4G A;  4YCQ A;  3UW0 A;  4PMH A;  4XN3 A;  4XOT A;  4W8S A;  3N6Z A;  4OJO A;  1TYU A;  1EZG A;  2VFN A;  3JX8 A;  2O0W A;  2X6W A;  2F3L A;  2XTW A;  2VJI A;  2NT6 A;  5C1E A;  2IQ7 A;  1QJV A;  2VBK A;  2VFO A;  3ML3 A;  1O8D A;  2B0R A;  2PEC A;  3KRG A;  4XLF A;  4XLC A;  1O8M A;  4XN0 A;  4Z06 A;  2QXZ A;  1O8F A;  4XQF A;  1LLZ A;  1RWR A;  1PLU A;  2BM7 A;  2V5I A;  2XC1 A;  4I84 A;  5JLV C;  1O8K A;  3GQ7 A;  4OJL A;  3T9G A;  4C2L A;  1BN8 A;  5C1C A;  3PET A;  1LM1 A;  1K5C A;  4XON A;  4YC5 A;  1OGM X;  1QRB A;  1NHC A;  2VFP A;  4XLE A;  4V02 C;  3NAW A;  1OOC A;  1O8J A;  1O8L A;  3SYJ A;  5AMV A;  4OZZ A;  1QQ1 A;  2O17 A;  1AIR A;  3WWG A;  1QA3 A;  4W8Q A;  1OFE A;  2QZA A;  1CZF A;  3GQ8 A;  2BM4 A;  1DAB A;  1EA0 A;  1RU4 A;  4YEL A;  1OFL A;  1WMR A;  3SZE A;  2VFQ A;  4EW9 A;  1O8I A;  3EQN A;  2NTP A;  3BH6 B;  3ZSC A;  1WXR A;  1HF2 A;  1RMG A;  2G0Y A;  1DBG A;  2QYU A;  3LYC A;  4MXN A;  1QRC A;  3VST A;  2BM6 A;  2J8I A;  4XKV A;  2BX6 A;  4JRA C;  2O1D A;  3PSZ A;  3VSU A;  3SQV A;  3ZPP A;  2VBE A;  3VMV A;  2XTY A;  3FY3 A;  4OM9 A;  1TSP A;  1TYW A;  1QCX A;  1EE6 A;  3N90 A;  4XNF A;  4URR A;  1PE9 A;  2O0V A;  2UVE A;  2NST A;  1O8G A;  1O88 A;  1TYX A;  3DU1 X;  1CLW A;  3BH7 B;  4YZX A;  4MR0 A;  2NTB A;  4XKW A;  2ODL A;  3SUC A;  1QA2 A;  1K8F A;  4YZA A;  1KCD A;  2X85 A;  4XMY A;  2UVF A;  2INV A;  3VSV A;  2NT9 A;  1OGO X;  4XLA A;  2PYH A;  4KH3 A;  4OJP A;  4HWV A;  3GRH A;  4XL9 A;  4YEI A;  4XLH A;  4OJ5 A;  2X3H A;  3B90 A;  1O8H A;  2VBM A;  4XR6 A;  3LMW A; 
#chains in the Genus database with same CATH homology
 3GQ9 A;  3VMW A;  2O04 A;  4U4B A;  4W8R A;  1GQ8 A;  4YZQ A;  1OFM A;  1IDK A;  3B4N A;  4YZ0 A;  1O8E A;  4NK8 A;  1BHE A;  4XM3 A;  1PXZ A;  4YEJ A;  1JRG A;  1KTW A;  4Z05 A;  2BSP A;  4OJ6 A;  1VBL A;  3JUR A;  4XOR A;  2NSP A;  3EQO A;  4W8T A;  1DBO A;  2INU A;  3GQA A;  2X6Y A;  2X6X A;  2NTQ A;  4NK6 A;  1IDJ A;  1X0C A;  1JTA A;  2Z8G A;  2VJJ A;  2NZM A;  1H80 A;  1XG2 A;  3B8Y A;  1KCC A;  4AVZ A;  4OZY A;  4Z03 A;  1HG8 A;  2PYG A;  2QY1 A;  4XOP A;  1IB4 A;  4U49 A;  1IA5 A;  2EWE A;  2QX3 A;  3UW0 A;  4PMH A;  4XN3 A;  4XOT A;  4W8S A;  4OJO A;  2O0W A;  2X6W A;  2VJI A;  2NT6 A;  5C1E A;  1QJV A;  2IQ7 A;  2VBK A;  4XLC A;  1O8D A;  2PEC A;  3KRG A;  4XLF A;  4XN0 A;  1O8M A;  4Z06 A;  2QXZ A;  1O8F A;  4XQF A;  1RWR A;  1PLU A;  4I84 A;  1O8K A;  3GQ7 A;  4OJL A;  3T9G A;  4C2L A;  1BN8 A;  5C1C A;  1K5C A;  4XON A;  1OGM X;  1NHC A;  4XLE A;  1OOC A;  1O8J A;  1O8L A;  5AMV A;  4OZZ A;  2O17 A;  1AIR A;  3WWG A;  4W8Q A;  1CZF A;  3GQ8 A;  1RU4 A;  4YEL A;  1OFL A;  1WMR A;  4EW9 A;  1O8I A;  3EQN A;  2NTP A;  3ZSC A;  1RMG A;  4MXN A;  1DBG A;  3VST A;  4XKV A;  2O1D A;  3VSU A;  3ZPP A;  2VBE A;  3VMV A;  3FY3 A;  1QCX A;  1EE6 A;  4XNF A;  4URR A;  1PE9 A;  2O0V A;  2UVE A;  2NST A;  1O8G A;  1O88 A;  4YZX A;  4MR0 A;  2NTB A;  4XKW A;  2ODL A;  3SUC A;  4YZA A;  1KCD A;  2X85 A;  4XMY A;  2UVF A;  2INV A;  3VSV A;  2NT9 A;  1OGO X;  4XLA A;  2PYH A;  4OJP A;  4HWV A;  3GRH A;  4XL9 A;  4XLH A;  4OJ5 A;  2X3H A;  3B90 A;  1O8H A;  2VBM A;  4XR6 A;  3LMW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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