4C2LA

Crystal structure of endo-xylogalacturonan hydrolase from aspergillus tubingensis
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
372
structure length
372
Chain Sequence
AVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGSTYYLNSVLDLGSCSDCDIQVEGLLKFASDTDYWSGRTAMISVSNVDGLKLRSLTGSGVIDGNGQDAWDLFASDSSYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGGATNVVFSNLKMDANSKSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPSSNYVTVDTISCTGSHGISVGSLGKSSDDSVKNIYVTGATMINSTKAAGIKTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSSFSGTTSDKYDPVVANLDCGADGTCGISISGFDVKAPSGKSEVLCANTPSDLGVTCTSGASG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Aspergillus tubingensis
publication title Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.
pubmed doi rcsb
molecule keywords ENDO-XYLOGALACTURONAN HYDROLASE A
total genus 149
structure length 372
sequence length 372
ec nomenclature ec 3.2.1.-:
pdb deposition date 2013-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4c2lA00
1O8FA 3T9GA 1OGMX 4YELA 1O8EA 1K5CA 1O8LA 4XLAA 4XOTA 4MR0A 1DBOA 4XMYA 1IB4A 4OJOA 2PYGA 1QCXA 2O0VA 1AIRA 4NK8A 1PXZA 4XL9A 3B4NA 2NT9A 4URRA 4OJ5A 1WMRA 1XG2A 2INUA 1NHCA 4YZQA 4XN0A 4EW9A 1IA5A 2Z8GA 1O8HA 4U49A 4XONA 2PYHA 1O8JA 1O8DA 4XLFA 1GQ8A 4XKWA 4U4BA 2ODLA 3UW0A 2VJIA 4I84A 4YEJA 4W8TA 3GQ7A 1RMGA 3SUCA 2VBMA 4OJ6A 2BSPA 2NTPA 1KCCA 4YZAA 2UVEA 2QY1A 1EE6A 1DBGA 3B8YA 1BHEA 2IQ7A 4MXNA 2O17A 1OGOX 4XOPA 4XR6A 1JTAA 3EQOA 2NSTA 4W8SA 2PECA 3VSVA 3GQ9A 2QX3A 4OJPA 4XLHA 4Z03A 2VBEA 3LMWA 3FY3A 4XORA 1KTWA 2EWEA 1HG8A 1PLUA 4Z06A 2X6XA 4NK6A 3WWGA 3GRHA 2NTBA 4OZYA 1O8MA 1PE9A 3VMWA 2O1DA 3GQAA 3GQ8A 4YZ0A 4XKVA 4XN3A 4XLEA 3VSUA 1OFLA 2X6YA 2NTQA 3EQNA 1X0CA 2UVFA 2X3HA 5AMVA 5C1EA 1H80A 1IDJA 4XQFA 1QJVA 2O0WA 1CZFA 3VSTA 4OJLA 2NZMA 1O8KA 2X85A 4W8RA 2NT6A 3JURA 4OZZA 1RU4A 1O8GA 1RWRA 4HWVA 3ZPPA 5C1CA 4XNFA 4XM3A 4AVZA 2NSPA 4PMHA 4W8QA 2O04A 4YZXA 2INVA 2VJJA 1KCDA 1BN8A 2VBKA 1OFMA 4XLCA 1O88A 1VBLA 3KRGA 1O8IA 4C2LA 1OOCA 1IDKA 3ZSCA 1JRGA 3VMVA 2QXZA 3B90A 4Z05A 2X6WA
chains in the Genus database with same CATH superfamily
1LLWA 1O8FA 3T9GA 1OGMX 4YELA 3DU1X 1O8EA 1TSPA 1K5CA 1WXRA 1O8LA 4XLAA 4XOTA 3SZEA 4MR0A 1DBOA 4XMYA 1EZGA 1IB4A 4OJOA 3RIQA 2XC1A 2PYGA 1QCXA 2O0VA 1DABA 4YCQA 1L1IA 3P4GA 1AIRA 4NK8A 1PXZA 3NAWA 4XL9A 1TYUA 2NT9A 3B4NA 4URRA 4YC5A 4OJ5A 1WMRA 1XG2A 2W7ZA 2INUA 2XTWA 1NHCA 4YZQA 1TYWA 4XN0A 2J8IA 4EW9A 2Z8GA 1IA5A 2YUHA 1O8HA 4U49A 4XONA 2PYHA 3PSZA 1O8JA 1O8DA 4XLFA 1KQ5A 2XT2A 1QRCA 1GQ8A 4XKWA 4U4BA 4YEIA 1QA2A 2ODLA 3UW0A 2BM4A 2BM6A 2VJIA 4I84A 4YEJA 4W8TA 3PETA 4YDTA 3GQ7A 1RMGA 2XTYA 3SUCA 2XT4A 2VBMA 4OJ6A 2BSPA 2NTPA 3JX8A 1KCCA 4YZAA 2UVEA 2QY1A 2VFOA 1EE6A 1DBGA 3ML3A 3B8YA 1BHEA 2B0RA 2IQ7A 3BH7B 4MXNA 2O17A 2V5IA 1OGOX 3SQVA 4XOPA 4XR6A 1JTAA 3EQOA 2NSTA 4W8SA 2PECA 1OFDA 4OM9A 3VSVA 3GQ9A 2O6WA 1TYVA 1LLZA 4OPWA 2QX3A 4OJPA 4XLHA 4Z03A 2VFPA 2VBEA 3LMWA 3SYJA 3FY3A 4XORA 3LYCA 1KTWA 2EWEA 1HG8A 1PLUA 4Z06A 2X6XA 4NK6A 3NB2A 3GRHA 3WWGA 2NTBA 4V02C 4OZYA 1O8MA 1PE9A 3VMWA 5JMCB 2O1DA 2QYUA 3GQAA 3GQ8A 1K8FA 2G0YA 4YZ0A 4XKVA 1OFEA 2XTXA 3BH6B 4KH3A 4XN3A 4XLEA 2F3LA 3PSSA 3VSUA 1OFLA 2X6YA 2NTQA 2BM7A 3LJYA 3EQNA 3SY2A 1X0CA 2UVFA 5JLVC 2X3HA 5AMVA 5C1EA 1H80A 1IDJA 2J8KA 4XQFA 1QJVA 2O0WA 1CZFA 3N6ZA 2BM5A 3VSTA 4OJLA 2NZMA 1O8KA 2X85A 4W8RA 2NT6A 1HF2A 3JURA 1QA3A 1QQ1A 3N90A 4OZZA 1RU4A 1O8GA 1RWRA 4HWVA 3ZPPA 5C1CA 1LM1A 4XNFA 4XM3A 2IOUG 4AVZA 2NSPA 4PMHA 4JRAC 4W8QA 2O04A 4YFOA 4YZXA 3AK5A 2INVA 1TYXA 2VJJA 1KCDA 1EA0A 1BN8A 2QZAA 2VBKA 1OFMA 1K4ZA 2VFQA 5DNSA 4XLCA 1O88A 1VBLA 2VFMA 1O8IA 3KRGA 1OOCA 4C2LA 1IDKA 2BX6A 3ZSCA 1QA1A 1JRGA 1CLWA 3VMVA 3H09A 2VFNA 2QXZA 3B90A 3TH0A 4Z05A 2X6WA 1QRBA
chains in the Genus database with same CATH topology
1O8FA 3T9GA 1OGMX 4YELA 1O8EA 1K5CA 1O8LA 4XLAA 4XOTA 4MR0A 1DBOA 4XMYA 1IB4A 4OJOA 2PYGA 1QCXA 2O0VA 1AIRA 4NK8A 1PXZA 4XL9A 3B4NA 2NT9A 4URRA 4OJ5A 1WMRA 1XG2A 2INUA 1NHCA 4YZQA 4XN0A 4EW9A 1IA5A 2Z8GA 1O8HA 4U49A 4XONA 2PYHA 1O8JA 1O8DA 4XLFA 1GQ8A 4XKWA 4U4BA 2ODLA 3UW0A 2VJIA 4I84A 4YEJA 4W8TA 3GQ7A 1RMGA 3SUCA 2VBMA 4OJ6A 2BSPA 2NTPA 1KCCA 4YZAA 2UVEA 2QY1A 1EE6A 1DBGA 3B8YA 1BHEA 2IQ7A 4MXNA 2O17A 1OGOX 4XOPA 4XR6A 1JTAA 3EQOA 2NSTA 4W8SA 2PECA 3VSVA 3GQ9A 2QX3A 4OJPA 4XLHA 4Z03A 2VBEA 3LMWA 3FY3A 4XORA 1KTWA 2EWEA 1HG8A 1PLUA 4Z06A 2X6XA 4NK6A 3WWGA 3GRHA 2NTBA 4OZYA 1O8MA 1PE9A 3VMWA 2O1DA 3GQAA 3GQ8A 4YZ0A 4XKVA 4XN3A 4XLEA 3VSUA 1OFLA 2X6YA 2NTQA 3EQNA 1X0CA 2UVFA 2X3HA 5AMVA 5C1EA 1H80A 1IDJA 4XQFA 1QJVA 2O0WA 1CZFA 3VSTA 4OJLA 2NZMA 1O8KA 2X85A 4W8RA 2NT6A 3JURA 4OZZA 1RU4A 1O8GA 1RWRA 4HWVA 3ZPPA 5C1CA 4XNFA 4XM3A 4AVZA 2NSPA 4PMHA 4W8QA 2O04A 4YZXA 2INVA 2VJJA 1KCDA 1BN8A 2VBKA 1OFMA 4XLCA 1O88A 1VBLA 3KRGA 1O8IA 4C2LA 1OOCA 1IDKA 3ZSCA 1JRGA 3VMVA 2QXZA 3B90A 4Z05A 2X6WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8F A;  3T9G A;  1OGM X;  4YEL A;  1O8E A;  1K5C A;  1O8L A;  4XLA A;  4XOT A;  4MR0 A;  1DBO A;  4XMY A;  1IB4 A;  4OJO A;  2PYG A;  1QCX A;  2O0V A;  1AIR A;  4NK8 A;  1PXZ A;  4XL9 A;  3B4N A;  2NT9 A;  4URR A;  4OJ5 A;  1WMR A;  1XG2 A;  2INU A;  1NHC A;  4YZQ A;  4XN0 A;  4EW9 A;  1IA5 A;  2Z8G A;  1O8H A;  4U49 A;  4XON A;  2PYH A;  1O8J A;  1O8D A;  4XLF A;  1GQ8 A;  4XKW A;  4U4B A;  2ODL A;  3UW0 A;  2VJI A;  4I84 A;  4YEJ A;  4W8T A;  3GQ7 A;  1RMG A;  3SUC A;  2VBM A;  4OJ6 A;  2BSP A;  2NTP A;  1KCC A;  4YZA A;  2UVE A;  2QY1 A;  1EE6 A;  1DBG A;  3B8Y A;  1BHE A;  2IQ7 A;  4MXN A;  2O17 A;  1OGO X;  4XOP A;  4XR6 A;  1JTA A;  3EQO A;  2NST A;  4W8S A;  2PEC A;  3VSV A;  3GQ9 A;  2QX3 A;  4OJP A;  4XLH A;  4Z03 A;  2VBE A;  3LMW A;  3FY3 A;  4XOR A;  1KTW A;  2EWE A;  1HG8 A;  1PLU A;  4Z06 A;  2X6X A;  4NK6 A;  3WWG A;  3GRH A;  2NTB A;  4OZY A;  1O8M A;  1PE9 A;  3VMW A;  2O1D A;  3GQA A;  3GQ8 A;  4YZ0 A;  4XKV A;  4XN3 A;  4XLE A;  3VSU A;  1OFL A;  2X6Y A;  2NTQ A;  3EQN A;  1X0C A;  2UVF A;  2X3H A;  5AMV A;  5C1E A;  1H80 A;  1IDJ A;  4XQF A;  1QJV A;  2O0W A;  1CZF A;  3VST A;  4OJL A;  2NZM A;  1O8K A;  2X85 A;  4W8R A;  2NT6 A;  3JUR A;  4OZZ A;  1RU4 A;  1O8G A;  1RWR A;  4HWV A;  3ZPP A;  5C1C A;  4XNF A;  4XM3 A;  4AVZ A;  2NSP A;  4PMH A;  4W8Q A;  2O04 A;  4YZX A;  2INV A;  2VJJ A;  1KCD A;  1BN8 A;  2VBK A;  1OFM A;  4XLC A;  1O88 A;  1VBL A;  3KRG A;  1O8I A;  4C2L A;  1OOC A;  1IDK A;  3ZSC A;  1JRG A;  3VMV A;  2QXZ A;  3B90 A;  4Z05 A;  2X6W A; 
#chains in the Genus database with same CATH topology
 1LLW A;  1O8F A;  3T9G A;  1OGM X;  4YEL A;  3DU1 X;  1O8E A;  1TSP A;  1K5C A;  1WXR A;  1O8L A;  4XLA A;  4XOT A;  3SZE A;  4MR0 A;  1DBO A;  4XMY A;  1EZG A;  1IB4 A;  4OJO A;  3RIQ A;  2XC1 A;  2PYG A;  1QCX A;  2O0V A;  1DAB A;  4YCQ A;  1L1I A;  3P4G A;  1AIR A;  4NK8 A;  1PXZ A;  3NAW A;  4XL9 A;  1TYU A;  2NT9 A;  3B4N A;  4URR A;  4YC5 A;  4OJ5 A;  1WMR A;  1XG2 A;  2W7Z A;  2INU A;  2XTW A;  1NHC A;  4YZQ A;  1TYW A;  4XN0 A;  2J8I A;  4EW9 A;  2Z8G A;  1IA5 A;  2YUH A;  1O8H A;  4U49 A;  4XON A;  2PYH A;  3PSZ A;  1O8J A;  1O8D A;  4XLF A;  1KQ5 A;  2XT2 A;  1QRC A;  1GQ8 A;  4XKW A;  4U4B A;  4YEI A;  1QA2 A;  2ODL A;  3UW0 A;  2BM4 A;  2BM6 A;  2VJI A;  4I84 A;  4YEJ A;  4W8T A;  3PET A;  4YDT A;  3GQ7 A;  1RMG A;  2XTY A;  3SUC A;  2XT4 A;  2VBM A;  4OJ6 A;  2BSP A;  2NTP A;  3JX8 A;  1KCC A;  4YZA A;  2UVE A;  2QY1 A;  2VFO A;  1EE6 A;  1DBG A;  3ML3 A;  3B8Y A;  1BHE A;  2B0R A;  2IQ7 A;  3BH7 B;  4MXN A;  2O17 A;  2V5I A;  1OGO X;  3SQV A;  4XOP A;  4XR6 A;  1JTA A;  3EQO A;  2NST A;  4W8S A;  2PEC A;  1OFD A;  4OM9 A;  3VSV A;  3GQ9 A;  2O6W A;  1TYV A;  1LLZ A;  4OPW A;  2QX3 A;  4OJP A;  4XLH A;  4Z03 A;  2VFP A;  2VBE A;  3LMW A;  3SYJ A;  3FY3 A;  4XOR A;  3LYC A;  1KTW A;  2EWE A;  1HG8 A;  1PLU A;  4Z06 A;  2X6X A;  4NK6 A;  3NB2 A;  3GRH A;  3WWG A;  2NTB A;  4V02 C;  4OZY A;  1O8M A;  1PE9 A;  3VMW A;  5JMC B;  2O1D A;  2QYU A;  3GQA A;  3GQ8 A;  1K8F A;  2G0Y A;  4YZ0 A;  4XKV A;  1OFE A;  2XTX A;  3BH6 B;  4KH3 A;  4XN3 A;  4XLE A;  2F3L A;  3PSS A;  3VSU A;  1OFL A;  2X6Y A;  2NTQ A;  2BM7 A;  3LJY A;  3EQN A;  3SY2 A;  1X0C A;  2UVF A;  5JLV C;  2X3H A;  5AMV A;  5C1E A;  1H80 A;  1IDJ A;  2J8K A;  4XQF A;  1QJV A;  2O0W A;  1CZF A;  3N6Z A;  2BM5 A;  3VST A;  4OJL A;  2NZM A;  1O8K A;  2X85 A;  4W8R A;  2NT6 A;  1HF2 A;  3JUR A;  1QA3 A;  1QQ1 A;  3N90 A;  4OZZ A;  1RU4 A;  1O8G A;  1RWR A;  4HWV A;  3ZPP A;  5C1C A;  1LM1 A;  4XNF A;  4XM3 A;  2IOU G;  4AVZ A;  2NSP A;  4PMH A;  4JRA C;  4W8Q A;  2O04 A;  4YFO A;  4YZX A;  3AK5 A;  2INV A;  1TYX A;  2VJJ A;  1KCD A;  1EA0 A;  1BN8 A;  2QZA A;  2VBK A;  1OFM A;  1K4Z A;  2VFQ A;  5DNS A;  4XLC A;  1O88 A;  1VBL A;  2VFM A;  1O8I A;  3KRG A;  1OOC A;  4C2L A;  1IDK A;  2BX6 A;  3ZSC A;  1QA1 A;  1JRG A;  1CLW A;  3VMV A;  3H09 A;  2VFN A;  2QXZ A;  3B90 A;  3TH0 A;  4Z05 A;  2X6W A;  1QRB A; 
#chains in the Genus database with same CATH homology
 1O8F A;  3T9G A;  1OGM X;  4YEL A;  1O8E A;  1K5C A;  1O8L A;  4XLA A;  4XOT A;  4MR0 A;  1DBO A;  4XMY A;  1IB4 A;  4OJO A;  2PYG A;  1QCX A;  2O0V A;  1AIR A;  4NK8 A;  1PXZ A;  4XL9 A;  3B4N A;  2NT9 A;  4URR A;  4OJ5 A;  1WMR A;  1XG2 A;  2INU A;  1NHC A;  4YZQ A;  4XN0 A;  4EW9 A;  1IA5 A;  2Z8G A;  1O8H A;  4U49 A;  4XON A;  2PYH A;  1O8J A;  1O8D A;  4XLF A;  1GQ8 A;  4XKW A;  4U4B A;  2ODL A;  3UW0 A;  2VJI A;  4I84 A;  4YEJ A;  4W8T A;  3GQ7 A;  1RMG A;  3SUC A;  2VBM A;  4OJ6 A;  2BSP A;  2NTP A;  1KCC A;  4YZA A;  2UVE A;  2QY1 A;  1EE6 A;  1DBG A;  3B8Y A;  1BHE A;  2IQ7 A;  4MXN A;  2O17 A;  1OGO X;  4XOP A;  4XR6 A;  1JTA A;  3EQO A;  2NST A;  4W8S A;  2PEC A;  3VSV A;  3GQ9 A;  2QX3 A;  4OJP A;  4XLH A;  4Z03 A;  2VBE A;  3LMW A;  3FY3 A;  4XOR A;  1KTW A;  2EWE A;  1HG8 A;  1PLU A;  4Z06 A;  2X6X A;  4NK6 A;  3WWG A;  3GRH A;  2NTB A;  4OZY A;  1O8M A;  1PE9 A;  3VMW A;  2O1D A;  3GQA A;  3GQ8 A;  4YZ0 A;  4XKV A;  4XN3 A;  4XLE A;  3VSU A;  1OFL A;  2X6Y A;  2NTQ A;  3EQN A;  1X0C A;  2UVF A;  2X3H A;  5AMV A;  5C1E A;  1H80 A;  1IDJ A;  4XQF A;  1QJV A;  2O0W A;  1CZF A;  3VST A;  4OJL A;  2NZM A;  1O8K A;  2X85 A;  4W8R A;  2NT6 A;  3JUR A;  4OZZ A;  1RU4 A;  1O8G A;  1RWR A;  4HWV A;  3ZPP A;  5C1C A;  4XNF A;  4XM3 A;  4AVZ A;  2NSP A;  4PMH A;  4W8Q A;  2O04 A;  4YZX A;  2INV A;  2VJJ A;  1KCD A;  1BN8 A;  2VBK A;  1OFM A;  4XLC A;  1O88 A;  1VBL A;  3KRG A;  1O8I A;  4C2L A;  1OOC A;  1IDK A;  3ZSC A;  1JRG A;  3VMV A;  2QXZ A;  3B90 A;  4Z05 A;  2X6W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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