4MXN | Genus

Total Genus 84

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	225
structure length	225
Chain Sequence	KDYQVAMFGIKSDGVTLNTRSIQRAVDYISEQGGGRLIFYVGRYLTGSIELKSNVTIRIEEGAVLVAVPSVYDFKGVGGCNAIIYADKQKNIGIGGKGIIDGRSIAVRASVEEQLQKGHIEGNVSDYAPALICMEGCEDVKIEQVTLQDAANVAEIYKDCHNVTVDKVVVNAGASDRKAISISGCDGVKMTDCYFNMAGNPLESAGTSRNLIFTNCITPDGKAVS

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__023771993272212466__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__023771993272212466__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4MXN/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__023771993272212466__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"023771993272212466","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4MXN/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__023771993272212466__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Parabacteroides merdae
publication title	Crystal structure of a hypothetical protein (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution rcsb
molecule keywords	Uncharacterized protein
total genus	84
structure length	225
sequence length	225
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2013-09-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00295	Glyco_hydro_28	Glycosyl hydrolases family 28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	4mxnA00

4HWVA 4YZQA 4YZXA 1PE9A 4Z03A 3ZSCA 2Z8GA 3VSTA 1RWRA 1O8FA 4MXNA 2X6XA 2VBEA 4NK6A 3ZPPA 2O04A 1OOCA 2QY1A 1QCXA 1IA5A 2VJIA 4XR6A 1CZFA 4XLFA 3VMVA 3EQOA 1GQ8A 4XOTA 5AMVA 4U4BA 1JRGA 4XORA 3VSUA 1O8MA 2NSTA 1DBOA 1OFMA 4XM3A 2PECA 1EE6A 4URRA 1JTAA 1O8HA 1OGOX 1KCDA 4YZ0A 1IDJA 4OZZA 3KRGA 4MR0A 4YEJA 3B8YA 4XKWA 1PLUA 1IDKA 4U49A 5C1EA 1H80A 3EQNA 2INUA 4OJ5A 4XQFA 2PYGA 4XLEA 4YZAA 4NK8A 3WWGA 2NTQA 2O0VA 3JURA 2IQ7A 1HG8A 4EW9A 2NSPA 2NT9A 4YELA 2X6WA 3VMWA 4W8QA 1O8JA 1KCCA 2NT6A 3GRHA 4XNFA 1K5CA 2X3HA 2X6YA 3UW0A 4OJLA 4XN3A 2VBKA 2O17A 1O88A 2QXZA 3GQ9A 5C1CA 1O8EA 1DBGA 4XLCA 3FY3A 1OFLA 1WMRA 2O0WA 4W8SA 2X85A 2ODLA 4XL9A 2NTPA 3LMWA 1O8KA 1AIRA 3GQ8A 1VBLA 3GQ7A 3SUCA 1PXZA 2QX3A 1O8GA 1O8LA 4XMYA 2UVEA 2NZMA 2VBMA 4PMHA 1RMGA 1O8IA 1X0CA 1IB4A 2PYHA 2O1DA 2BSPA 4XN0A 4XOPA 4W8TA 1QJVA 3T9GA 4Z06A 2EWEA 4OJPA 1BHEA 2INVA 4OZYA 4Z05A 1NHCA 4XLHA 3B90A 4XONA 4AVZA 3B4NA 1RU4A 1OGMX 4C2LA 2VJJA 4W8RA 1BN8A 2UVFA 4OJOA 3GQAA 2NTBA 4XLAA 4XKVA 1O8DA 4OJ6A 1KTWA 4I84A 1XG2A 3VSVA
chains in the Genus database with same CATH superfamily

2B0RA 4HWVA 4YZQA 3H09A 4YZXA 1PE9A 4Z03A 4KH3A 2F3LA 1LLWA 2Z8GA 1RWRA 3VSTA 3ZSCA 1O8FA 4MXNA 4OM9A 2X6XA 2VBEA 4NK6A 3ZPPA 2O04A 1OOCA 2QY1A 1QCXA 1IA5A 2XTXA 2VJIA 4XR6A 1CZFA 3NAWA 4XLFA 2VFQA 3JX8A 1HF2A 3VMVA 3EQOA 1GQ8A 4XOTA 5AMVA 3RIQA 4U4BA 1LM1A 1JRGA 4XORA 3VSUA 5DNSA 4JRAC 1O8MA 1TYUA 2BM7A 5JMCB 3PSZA 1TSPA 2NSTA 1DBOA 1OFMA 3PETA 4XM3A 2PECA 2XC1A 2BM5A 1EE6A 4URRA 1JTAA 1QA1A 1O8HA 2QYUA 1OGOX 2BM4A 1K8FA 2VFMA 1KCDA 4YZ0A 1IDJA 4OZZA 3SQVA 3KRGA 4MR0A 4YEJA 3B8YA 4XKWA 1PLUA 1IDKA 4U49A 5C1EA 2BX6A 1QA3A 2VFPA 3P4GA 1H80A 3EQNA 2INUA 4OJ5A 4XQFA 2PYGA 1QQ1A 4XLEA 4YZAA 3LYCA 4NK8A 3WWGA 2NTQA 2O0VA 3JURA 2QZAA 2IQ7A 1HG8A 4EW9A 2YUHA 3SYJA 2NSPA 2XTWA 2NT9A 4YELA 2X6WA 1LLZA 5JLVC 3AK5A 3VMWA 4W8QA 3LJYA 1O8JA 1KCCA 2NT6A 3GRHA 4XNFA 1K5CA 2X3HA 2X6YA 1EA0A 3UW0A 2VFOA 1WXRA 4OJLA 4YCQA 1L1IA 4YC5A 4XN3A 2VBKA 2O17A 3NB2A 3BH6B 1O88A 2QXZA 3GQ9A 5C1CA 1O8EA 2O6WA 1DBGA 2G0YA 2IOUG 2W7ZA 4XLCA 4V02C 3FY3A 1OFLA 1WMRA 2O0WA 2XT2A 4W8SA 2X85A 2ODLA 4XL9A 2NTPA 1KQ5A 3LMWA 1O8KA 1AIRA 3GQ8A 3N6ZA 1VBLA 3GQ7A 3SUCA 4OPWA 1PXZA 2QX3A 3ML3A 4YEIA 1O8GA 1O8LA 1TYXA 2XT4A 2UVEA 4XMYA 2NZMA 2VBMA 4PMHA 1RMGA 2VFNA 1O8IA 1X0CA 1IB4A 1TYWA 2PYHA 2O1DA 4YDTA 2BSPA 2J8IA 4XN0A 4W8TA 4XOPA 3SZEA 1QJVA 3DU1X 1OFDA 3T9GA 4Z06A 2EWEA 4OJPA 1BHEA 4YFOA 2INVA 1QRBA 4OZYA 4Z05A 1NHCA 4XLHA 1DABA 3B90A 4XONA 4AVZA 3BH7B 2V5IA 3SY2A 3B4NA 1RU4A 1K4ZA 1OGMX 1OFEA 3PSSA 4C2LA 2VJJA 4W8RA 1BN8A 2UVFA 4OJOA 2XTYA 1QA2A 3GQAA 2NTBA 4XLAA 4XKVA 1O8DA 4OJ6A 1KTWA 4I84A 3N90A 1TYVA 1EZGA 1CLWA 1XG2A 2J8KA 3VSVA 3TH0A 2BM6A 1QRCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4HWV A;  4YZQ A;  4YZX A;  1PE9 A;  4Z03 A;  3ZSC A;  2Z8G A;  3VST A;  1RWR A;  1O8F A;  4MXN A;  2X6X A;  2VBE A;  4NK6 A;  3ZPP A;  2O04 A;  1OOC A;  2QY1 A;  1QCX A;  1IA5 A;  2VJI A;  4XR6 A;  1CZF A;  4XLF A;  3VMV A;  3EQO A;  1GQ8 A;  4XOT A;  5AMV A;  4U4B A;  1JRG A;  4XOR A;  3VSU A;  1O8M A;  2NST A;  1DBO A;  1OFM A;  4XM3 A;  2PEC A;  1EE6 A;  4URR A;  1JTA A;  1O8H A;  1OGO X;  1KCD A;  4YZ0 A;  1IDJ A;  4OZZ A;  3KRG A;  4MR0 A;  4YEJ A;  3B8Y A;  4XKW A;  1PLU A;  1IDK A;  4U49 A;  5C1E A;  1H80 A;  3EQN A;  2INU A;  4OJ5 A;  4XQF A;  2PYG A;  4XLE A;  4YZA A;  4NK8 A;  3WWG A;  2NTQ A;  2O0V A;  3JUR A;  2IQ7 A;  1HG8 A;  4EW9 A;  2NSP A;  2NT9 A;  4YEL A;  2X6W A;  3VMW A;  4W8Q A;  1O8J A;  1KCC A;  2NT6 A;  3GRH A;  4XNF A;  1K5C A;  2X3H A;  2X6Y A;  3UW0 A;  4OJL A;  4XN3 A;  2VBK A;  2O17 A;  1O88 A;  2QXZ A;  3GQ9 A;  5C1C A;  1O8E A;  1DBG A;  4XLC A;  3FY3 A;  1OFL A;  1WMR A;  2O0W A;  4W8S A;  2X85 A;  2ODL A;  4XL9 A;  2NTP A;  3LMW A;  1O8K A;  1AIR A;  3GQ8 A;  1VBL A;  3GQ7 A;  3SUC A;  1PXZ A;  2QX3 A;  1O8G A;  1O8L A;  4XMY A;  2UVE A;  2NZM A;  2VBM A;  4PMH A;  1RMG A;  1O8I A;  1X0C A;  1IB4 A;  2PYH A;  2O1D A;  2BSP A;  4XN0 A;  4XOP A;  4W8T A;  1QJV A;  3T9G A;  4Z06 A;  2EWE A;  4OJP A;  1BHE A;  2INV A;  4OZY A;  4Z05 A;  1NHC A;  4XLH A;  3B90 A;  4XON A;  4AVZ A;  3B4N A;  1RU4 A;  1OGM X;  4C2L A;  2VJJ A;  4W8R A;  1BN8 A;  2UVF A;  4OJO A;  3GQA A;  2NTB A;  4XLA A;  4XKV A;  1O8D A;  4OJ6 A;  1KTW A;  4I84 A;  1XG2 A;  3VSV A; 
#chains in the Genus database with same CATH topology
 2B0R A;  4HWV A;  4YZQ A;  3H09 A;  4YZX A;  1PE9 A;  4Z03 A;  4KH3 A;  2F3L A;  1LLW A;  2Z8G A;  1RWR A;  3VST A;  3ZSC A;  1O8F A;  4MXN A;  4OM9 A;  2X6X A;  2VBE A;  4NK6 A;  3ZPP A;  2O04 A;  1OOC A;  2QY1 A;  1QCX A;  1IA5 A;  2XTX A;  2VJI A;  4XR6 A;  1CZF A;  3NAW A;  4XLF A;  2VFQ A;  3JX8 A;  1HF2 A;  3VMV A;  3EQO A;  1GQ8 A;  4XOT A;  5AMV A;  3RIQ A;  4U4B A;  1LM1 A;  1JRG A;  4XOR A;  3VSU A;  5DNS A;  4JRA C;  1O8M A;  1TYU A;  2BM7 A;  5JMC B;  3PSZ A;  1TSP A;  2NST A;  1DBO A;  1OFM A;  3PET A;  4XM3 A;  2PEC A;  2XC1 A;  2BM5 A;  1EE6 A;  4URR A;  1JTA A;  1QA1 A;  1O8H A;  2QYU A;  1OGO X;  2BM4 A;  1K8F A;  2VFM A;  1KCD A;  4YZ0 A;  1IDJ A;  4OZZ A;  3SQV A;  3KRG A;  4MR0 A;  4YEJ A;  3B8Y A;  4XKW A;  1PLU A;  1IDK A;  4U49 A;  5C1E A;  2BX6 A;  1QA3 A;  2VFP A;  3P4G A;  1H80 A;  3EQN A;  2INU A;  4OJ5 A;  4XQF A;  2PYG A;  1QQ1 A;  4XLE A;  4YZA A;  3LYC A;  4NK8 A;  3WWG A;  2NTQ A;  2O0V A;  3JUR A;  2QZA A;  2IQ7 A;  1HG8 A;  4EW9 A;  2YUH A;  3SYJ A;  2NSP A;  2XTW A;  2NT9 A;  4YEL A;  2X6W A;  1LLZ A;  5JLV C;  3AK5 A;  3VMW A;  4W8Q A;  3LJY A;  1O8J A;  1KCC A;  2NT6 A;  3GRH A;  4XNF A;  1K5C A;  2X3H A;  2X6Y A;  1EA0 A;  3UW0 A;  2VFO A;  1WXR A;  4OJL A;  4YCQ A;  1L1I A;  4YC5 A;  4XN3 A;  2VBK A;  2O17 A;  3NB2 A;  3BH6 B;  1O88 A;  2QXZ A;  3GQ9 A;  5C1C A;  1O8E A;  2O6W A;  1DBG A;  2G0Y A;  2IOU G;  2W7Z A;  4XLC A;  4V02 C;  3FY3 A;  1OFL A;  1WMR A;  2O0W A;  2XT2 A;  4W8S A;  2X85 A;  2ODL A;  4XL9 A;  2NTP A;  1KQ5 A;  3LMW A;  1O8K A;  1AIR A;  3GQ8 A;  3N6Z A;  1VBL A;  3GQ7 A;  3SUC A;  4OPW A;  1PXZ A;  2QX3 A;  3ML3 A;  4YEI A;  1O8G A;  1O8L A;  1TYX A;  2XT4 A;  2UVE A;  4XMY A;  2NZM A;  2VBM A;  4PMH A;  1RMG A;  2VFN A;  1O8I A;  1X0C A;  1IB4 A;  1TYW A;  2PYH A;  2O1D A;  4YDT A;  2BSP A;  2J8I A;  4XN0 A;  4W8T A;  4XOP A;  3SZE A;  1QJV A;  3DU1 X;  1OFD A;  3T9G A;  4Z06 A;  2EWE A;  4OJP A;  1BHE A;  4YFO A;  2INV A;  1QRB A;  4OZY A;  4Z05 A;  1NHC A;  4XLH A;  1DAB A;  3B90 A;  4XON A;  4AVZ A;  3BH7 B;  2V5I A;  3SY2 A;  3B4N A;  1RU4 A;  1K4Z A;  1OGM X;  1OFE A;  3PSS A;  4C2L A;  2VJJ A;  4W8R A;  1BN8 A;  2UVF A;  4OJO A;  2XTY A;  1QA2 A;  3GQA A;  2NTB A;  4XLA A;  4XKV A;  1O8D A;  4OJ6 A;  1KTW A;  4I84 A;  3N90 A;  1TYV A;  1EZG A;  1CLW A;  1XG2 A;  2J8K A;  3VSV A;  3TH0 A;  2BM6 A;  1QRC A; 
#chains in the Genus database with same CATH homology
 4HWV A;  4YZQ A;  4YZX A;  1PE9 A;  4Z03 A;  3ZSC A;  2Z8G A;  3VST A;  1RWR A;  1O8F A;  4MXN A;  2X6X A;  2VBE A;  4NK6 A;  3ZPP A;  2O04 A;  1OOC A;  2QY1 A;  1QCX A;  1IA5 A;  2VJI A;  4XR6 A;  1CZF A;  4XLF A;  3VMV A;  3EQO A;  1GQ8 A;  4XOT A;  5AMV A;  4U4B A;  1JRG A;  4XOR A;  3VSU A;  1O8M A;  2NST A;  1DBO A;  1OFM A;  4XM3 A;  2PEC A;  1EE6 A;  4URR A;  1JTA A;  1O8H A;  1OGO X;  1KCD A;  4YZ0 A;  1IDJ A;  4OZZ A;  3KRG A;  4MR0 A;  4YEJ A;  3B8Y A;  4XKW A;  1PLU A;  1IDK A;  4U49 A;  5C1E A;  1H80 A;  3EQN A;  2INU A;  4OJ5 A;  4XQF A;  2PYG A;  4XLE A;  4YZA A;  4NK8 A;  3WWG A;  2NTQ A;  2O0V A;  3JUR A;  2IQ7 A;  1HG8 A;  4EW9 A;  2NSP A;  2NT9 A;  4YEL A;  2X6W A;  3VMW A;  4W8Q A;  1O8J A;  1KCC A;  2NT6 A;  3GRH A;  4XNF A;  1K5C A;  2X3H A;  2X6Y A;  3UW0 A;  4OJL A;  4XN3 A;  2VBK A;  2O17 A;  1O88 A;  2QXZ A;  3GQ9 A;  5C1C A;  1O8E A;  1DBG A;  4XLC A;  3FY3 A;  1OFL A;  1WMR A;  2O0W A;  4W8S A;  2X85 A;  2ODL A;  4XL9 A;  2NTP A;  3LMW A;  1O8K A;  1AIR A;  3GQ8 A;  1VBL A;  3GQ7 A;  3SUC A;  1PXZ A;  2QX3 A;  1O8G A;  1O8L A;  4XMY A;  2UVE A;  2NZM A;  2VBM A;  4PMH A;  1RMG A;  1O8I A;  1X0C A;  1IB4 A;  2PYH A;  2O1D A;  2BSP A;  4XN0 A;  4XOP A;  4W8T A;  1QJV A;  3T9G A;  4Z06 A;  2EWE A;  4OJP A;  1BHE A;  2INV A;  4OZY A;  4Z05 A;  1NHC A;  4XLH A;  3B90 A;  4XON A;  4AVZ A;  3B4N A;  1RU4 A;  1OGM X;  4C2L A;  2VJJ A;  4W8R A;  1BN8 A;  2UVF A;  4OJO A;  3GQA A;  2NTB A;  4XLA A;  4XKV A;  1O8D A;  4OJ6 A;  1KTW A;  4I84 A;  1XG2 A;  3VSV A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4MXNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations