The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
87
|
sequence length |
241
|
structure length |
241
|
Chain Sequence |
GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLKAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a putative adhesin (PARMER_02777) from Parabacteroides merdae ATCC 43184 at 1.75 A resolution
rcsb |
| molecule keywords |
Uncharacterized protein
|
| molecule tags |
Cell adhesion
|
| source organism |
Parabacteroides merdae atcc 43184
|
| total genus |
87
|
| structure length |
241
|
| sequence length |
241
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2014-02-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10988 | DUF2807 | Putative auto-transporter adhesin, head GIN domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Pectate Lyase C-like |
#chains in the Genus database with same CATH superfamily 3LYC A; 3PET A; 3JX8 A; 3LJY A; 4OPW A; #chains in the Genus database with same CATH topology 3GQ9 A; 3VMW A; 2O04 A; 1OFD A; 3SY2 A; 4U4B A; 2XT2 A; 4W8R A; 1GQ8 A; 4YZQ A; 1OFM A; 1IDK A; 3B4N A; 4YZ0 A; 1O8E A; 4NK8 A; 1BHE A; 4XM3 A; 1PXZ A; 4YEJ A; 1JRG A; 1KTW A; 2W7Z A; 4Z05 A; 1QA1 A; 2BSP A; 4OJ6 A; 1VBL A; 3JUR A; 2O6W A; 4XOR A; 2VFM A; 5DNS A; 2BM5 A; 2NSP A; 3AK5 A; 4OPW A; 3EQO A; 3RIQ A; 1TYV A; 1K4Z A; 4W8T A; 3PSS A; 1DBO A; 2INU A; 3GQA A; 2X6Y A; 2YUH A; 2X6X A; 5JMC B; 2XT4 A; 2NTQ A; 4NK6 A; 2IOU G; 1IDJ A; 1X0C A; 4YDT A; 3NB2 A; 1JTA A; 2Z8G A; 1KQ5 A; 2VJJ A; 2NZM A; 1H80 A; 1XG2 A; 3B8Y A; 1KCC A; 3LJY A; 4AVZ A; 4OZY A; 4Z03 A; 1HG8 A; 2XTX A; 2PYG A; 1L1I A; 2QY1 A; 2J8K A; 3H09 A; 4XOP A; 1IB4 A; 3TH0 A; 1LLW A; 4U49 A; 2EWE A; 1IA5 A; 4YFO A; 2QX3 A; 3P4G A; 4YCQ A; 3UW0 A; 4PMH A; 4XN3 A; 4XOT A; 4W8S A; 3N6Z A; 4OJO A; 1TYU A; 1EZG A; 2VFN A; 3JX8 A; 2O0W A; 2X6W A; 2F3L A; 2XTW A; 2VJI A; 2NT6 A; 5C1E A; 2IQ7 A; 1QJV A; 2VBK A; 2VFO A; 3ML3 A; 1O8D A; 2B0R A; 2PEC A; 3KRG A; 4XLF A; 4XLC A; 1O8M A; 4XN0 A; 4Z06 A; 2QXZ A; 1O8F A; 4XQF A; 1LLZ A; 1RWR A; 1PLU A; 2BM7 A; 2V5I A; 2XC1 A; 4I84 A; 5JLV C; 1O8K A; 3GQ7 A; 4OJL A; 3T9G A; 4C2L A; 1BN8 A; 5C1C A; 3PET A; 1LM1 A; 1K5C A; 4XON A; 4YC5 A; 1OGM X; 1QRB A; 1NHC A; 2VFP A; 4XLE A; 4V02 C; 3NAW A; 1OOC A; 1O8J A; 1O8L A; 3SYJ A; 5AMV A; 4OZZ A; 1QQ1 A; 2O17 A; 1AIR A; 3WWG A; 1QA3 A; 4W8Q A; 1OFE A; 2QZA A; 1CZF A; 3GQ8 A; 2BM4 A; 1DAB A; 1EA0 A; 1RU4 A; 4YEL A; 1OFL A; 1WMR A; 3SZE A; 2VFQ A; 4EW9 A; 1O8I A; 3EQN A; 2NTP A; 3BH6 B; 3ZSC A; 1WXR A; 1HF2 A; 1RMG A; 2G0Y A; 1DBG A; 2QYU A; 3LYC A; 4MXN A; 1QRC A; 3VST A; 2BM6 A; 2J8I A; 4XKV A; 2BX6 A; 4JRA C; 2O1D A; 3PSZ A; 3VSU A; 3SQV A; 3ZPP A; 2VBE A; 3VMV A; 2XTY A; 3FY3 A; 4OM9 A; 1TSP A; 1TYW A; 1QCX A; 1EE6 A; 3N90 A; 4XNF A; 4URR A; 1PE9 A; 2O0V A; 2UVE A; 2NST A; 1O8G A; 1O88 A; 1TYX A; 3DU1 X; 1CLW A; 3BH7 B; 4YZX A; 4MR0 A; 2NTB A; 4XKW A; 2ODL A; 3SUC A; 1QA2 A; 1K8F A; 4YZA A; 1KCD A; 2X85 A; 4XMY A; 2UVF A; 2INV A; 3VSV A; 2NT9 A; 1OGO X; 4XLA A; 2PYH A; 4KH3 A; 4OJP A; 4HWV A; 3GRH A; 4XL9 A; 4YEI A; 4XLH A; 4OJ5 A; 2X3H A; 3B90 A; 1O8H A; 2VBM A; 4XR6 A; 3LMW A; #chains in the Genus database with same CATH homology 1KQ5 A; 3PET A; 4OM9 A; 1QRB A; 1TSP A; 1TYW A; 3LJY A; 2VFP A; 3N90 A; 4V02 C; 4OJL A; 3SYJ A; 1TYX A; 3H09 A; 1CLW A; 3BH7 B; 1QQ1 A; 1QA3 A; 3TH0 A; 2W7Z A; 3P4G A; 2BM4 A; 1DAB A; 1QA1 A; 4OJ6 A; 1QA2 A; 3N6Z A; 4OJO A; 3SZE A; 1TYU A; 2VFN A; 2VFQ A; 1K8F A; 2VFM A; 3JX8 A; 2BM5 A; 3AK5 A; 3BH6 B; 2F3L A; 4OPW A; 1WXR A; 3RIQ A; 1TYV A; 1K4Z A; 1HF2 A; 3ML3 A; 2G0Y A; 4KH3 A; 2VFO A; 3LYC A; 4OJP A; 1QRC A; 2B0R A; 2BM6 A; 2J8I A; 2YUH A; 4OJ5 A; 2BX6 A; 4JRA C; 5JMC B; 5JLV C; 2BM7 A; 2V5I A; 2XC1 A; 2IOU G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
