4YDT | Genus

Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	98
sequence length	215
structure length	215
Chain Sequence	HMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLEQADLAGADLQGAVLDGANLHGANLNNANLSEAMLTRANLEQADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Synthetic construct
publication title	Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension. pubmed doi rcsb
molecule keywords	beta1 protein
total genus	98
structure length	215
sequence length	215
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-02-23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.80	Mainly Beta	3 Solenoid	Pectate Lyase C-like	E3 ubiquitin-protein ligase SopA	4ydtA00

2QYUA 4YC5A 4YCQA 2XT4A 2J8KA 3NB2A 3PSZA 3DU1X 2QZAA 4YFOA 2O6WA 4YDTA 3SY2A 3NAWA 4YEIA 3PSSA 5DNSA 3SQVA 2XTYA 2XTWA 2XT2A 2XTXA
chains in the Genus database with same CATH superfamily

4KH3A 2BM5A 3VMVA 2NZMA 1IDKA 2NSPA 3BH7B 4OPWA 4YC5A 4PMHA 4URRA 4YZ0A 1OGMX 3LMWA 4XKVA 1TSPA 4XORA 1KCDA 2J8KA 3GQ9A 1IDJA 3VSTA 2V5IA 3VSUA 3BH6B 2VFOA 3DU1X 2O0VA 4Z06A 1K4ZA 3T9GA 1RWRA 2O6WA 2EWEA 2YUHA 2F3LA 4OJ5A 4MR0A 2PECA 2NSTA 3UW0A 1LLZA 2G0YA 2X6XA 5C1EA 4EW9A 5JLVC 1TYUA 1HG8A 1O8MA 1O8IA 4V02C 1NHCA 3SZEA 1BN8A 3AK5A 5AMVA 5C1CA 4XLCA 2VBMA 1KTWA 4W8SA 3JX8A 1PLUA 2QY1A 2QX3A 2NTQA 3EQNA 2IOUG 4XN0A 2BM6A 3B8YA 2INVA 3RIQA 1IB4A 3N6ZA 4YCQA 2XT4A 1OOCA 1OFEA 3ML3A 1QRCA 2W7ZA 4NK8A 4W8RA 4XKWA 3PSZA 1IA5A 2NTPA 2QZAA 2VJIA 1QJVA 4OJ6A 4OJLA 2VBKA 1DBOA 2O1DA 1TYWA 2NTBA 4YEIA 1JTAA 1KCCA 3GRHA 2VFMA 1O8DA 1DABA 2XTWA 3GQ8A 1O8KA 2ODLA 4Z03A 1WMRA 4XR6A 1O8LA 2BSPA 2X85A 1OFDA 1RMGA 2VJJA 1OFLA 1K5CA 3H09A 4OZYA 4XN3A 4Z05A 4XQFA 1PXZA 4I84A 4XLEA 1WXRA 1HF2A 2QXZA 3ZPPA 1RU4A 3LJYA 1EA0A 4XMYA 4OM9A 1LM1A 1QA1A 1BHEA 1TYXA 2UVEA 3KRGA 4YELA 1H80A 4OJPA 1DBGA 1O8FA 1QQ1A 3FY3A 4U49A 1KQ5A 4JRAC 3VSVA 2PYHA 4YFOA 2X6WA 3P4GA 4YDTA 3SY2A 4YZXA 2Z8GA 3SYJA 1TYVA 4AVZA 1K8FA 4MXNA 4XLHA 4XL9A 4XOTA 1QA3A 3SQVA 1JRGA 1CZFA 2XTYA 4XLAA 2UVFA 3TH0A 4YZAA 2VFQA 2BX6A 4HWVA 1VBLA 1QRBA 2VFNA 1O8JA 2XTXA 1EE6A 3N90A 3WWGA 4XOPA 2QYUA 2O17A 1QA2A 1EZGA 1LLWA 2BM4A 4XLFA 5JMCB 1AIRA 2VBEA 1CLWA 3LYCA 1GQ8A 2XC1A 3B90A 4XNFA 3VMWA 3ZSCA 3PETA 3NB2A 2NT9A 2BM7A 4OZZA 4YZQA 3SUCA 2X3HA 4YEJA 1QCXA 3NAWA 1OGOX 2X6YA 4OJOA 4XONA 2PYGA 2J8IA 1O8GA 3JURA 3PSSA 4W8TA 5DNSA 1O8HA 3B4NA 2B0RA 4W8QA 2O04A 3GQ7A 4XM3A 1O8EA 1XG2A 1X0CA 2IQ7A 3GQAA 1L1IA 1O88A 2O0WA 1PE9A 2INUA 2VFPA 4U4BA 2XT2A 1OFMA 2NT6A 3EQOA 4NK6A 4C2LA
chains in the Genus database with same CATH topology

2QYUA 4YC5A 4YCQA 2XT4A 2J8KA 3NB2A 3PSZA 3DU1X 2QZAA 4YFOA 2O6WA 4YDTA 3SY2A 3NAWA 4YEIA 3PSSA 5DNSA 3SQVA 2XTYA 2XTWA 2XT2A 2XTXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2QYU A;  4YC5 A;  4YCQ A;  2XT4 A;  2J8K A;  3NB2 A;  3PSZ A;  3DU1 X;  2QZA A;  4YFO A;  2O6W A;  4YDT A;  3SY2 A;  3NAW A;  4YEI A;  3PSS A;  5DNS A;  3SQV A;  2XTY A;  2XTW A;  2XT2 A;  2XTX A; 
#chains in the Genus database with same CATH topology
 4KH3 A;  2BM5 A;  3VMV A;  2NZM A;  1IDK A;  2NSP A;  3BH7 B;  4OPW A;  4YC5 A;  4PMH A;  4URR A;  4YZ0 A;  1OGM X;  3LMW A;  4XKV A;  1TSP A;  4XOR A;  1KCD A;  2J8K A;  3GQ9 A;  1IDJ A;  3VST A;  2V5I A;  3VSU A;  3BH6 B;  2VFO A;  3DU1 X;  2O0V A;  4Z06 A;  1K4Z A;  3T9G A;  1RWR A;  2O6W A;  2EWE A;  2YUH A;  2F3L A;  4OJ5 A;  4MR0 A;  2PEC A;  2NST A;  3UW0 A;  1LLZ A;  2G0Y A;  2X6X A;  5C1E A;  4EW9 A;  5JLV C;  1TYU A;  1HG8 A;  1O8M A;  1O8I A;  4V02 C;  1NHC A;  3SZE A;  1BN8 A;  3AK5 A;  5AMV A;  5C1C A;  4XLC A;  2VBM A;  1KTW A;  4W8S A;  3JX8 A;  1PLU A;  2QY1 A;  2QX3 A;  2NTQ A;  3EQN A;  2IOU G;  4XN0 A;  2BM6 A;  3B8Y A;  2INV A;  3RIQ A;  1IB4 A;  3N6Z A;  4YCQ A;  2XT4 A;  1OOC A;  1OFE A;  3ML3 A;  1QRC A;  2W7Z A;  4NK8 A;  4W8R A;  4XKW A;  3PSZ A;  1IA5 A;  2NTP A;  2QZA A;  2VJI A;  1QJV A;  4OJ6 A;  4OJL A;  2VBK A;  1DBO A;  2O1D A;  1TYW A;  2NTB A;  4YEI A;  1JTA A;  1KCC A;  3GRH A;  2VFM A;  1O8D A;  1DAB A;  2XTW A;  3GQ8 A;  1O8K A;  2ODL A;  4Z03 A;  1WMR A;  4XR6 A;  1O8L A;  2BSP A;  2X85 A;  1OFD A;  1RMG A;  2VJJ A;  1OFL A;  1K5C A;  3H09 A;  4OZY A;  4XN3 A;  4Z05 A;  4XQF A;  1PXZ A;  4I84 A;  4XLE A;  1WXR A;  1HF2 A;  2QXZ A;  3ZPP A;  1RU4 A;  3LJY A;  1EA0 A;  4XMY A;  4OM9 A;  1LM1 A;  1QA1 A;  1BHE A;  1TYX A;  2UVE A;  3KRG A;  4YEL A;  1H80 A;  4OJP A;  1DBG A;  1O8F A;  1QQ1 A;  3FY3 A;  4U49 A;  1KQ5 A;  4JRA C;  3VSV A;  2PYH A;  4YFO A;  2X6W A;  3P4G A;  4YDT A;  3SY2 A;  4YZX A;  2Z8G A;  3SYJ A;  1TYV A;  4AVZ A;  1K8F A;  4MXN A;  4XLH A;  4XL9 A;  4XOT A;  1QA3 A;  3SQV A;  1JRG A;  1CZF A;  2XTY A;  4XLA A;  2UVF A;  3TH0 A;  4YZA A;  2VFQ A;  2BX6 A;  4HWV A;  1VBL A;  1QRB A;  2VFN A;  1O8J A;  2XTX A;  1EE6 A;  3N90 A;  3WWG A;  4XOP A;  2QYU A;  2O17 A;  1QA2 A;  1EZG A;  1LLW A;  2BM4 A;  4XLF A;  5JMC B;  1AIR A;  2VBE A;  1CLW A;  3LYC A;  1GQ8 A;  2XC1 A;  3B90 A;  4XNF A;  3VMW A;  3ZSC A;  3PET A;  3NB2 A;  2NT9 A;  2BM7 A;  4OZZ A;  4YZQ A;  3SUC A;  2X3H A;  4YEJ A;  1QCX A;  3NAW A;  1OGO X;  2X6Y A;  4OJO A;  4XON A;  2PYG A;  2J8I A;  1O8G A;  3JUR A;  3PSS A;  4W8T A;  5DNS A;  1O8H A;  3B4N A;  2B0R A;  4W8Q A;  2O04 A;  3GQ7 A;  4XM3 A;  1O8E A;  1XG2 A;  1X0C A;  2IQ7 A;  3GQA A;  1L1I A;  1O88 A;  2O0W A;  1PE9 A;  2INU A;  2VFP A;  4U4B A;  2XT2 A;  1OFM A;  2NT6 A;  3EQO A;  4NK6 A;  4C2L A; 
#chains in the Genus database with same CATH homology
 2QYU A;  4YC5 A;  4YCQ A;  2XT4 A;  2J8K A;  3NB2 A;  3PSZ A;  3DU1 X;  2QZA A;  4YFO A;  2O6W A;  4YDT A;  3SY2 A;  3NAW A;  4YEI A;  3PSS A;  5DNS A;  3SQV A;  2XTY A;  2XTW A;  2XT2 A;  2XTX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4YDTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN