4YZ0A

C. bescii family 3 pectate lyase double mutant k108a/e39q in complex with trigalacturonic acid
Total Genus 85
2040608010012014016018001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
198
structure length
198
Chain Sequence
HHVGTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSQNQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAADAVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-8)TII1 (1-4)EMPTYS5 (45-47)TII2 (15-18)S3 (19-21)TII3 (48-51)TI'1 (22-25)TIV3 (59-62)S4 (26-29)TIV1 (29-32)TIV5 (82-85)TII'1 (62-65)S7 (66-68)TIV2 (38-41)TVIII1 (43-46)S9 (87-89)S8 (72-79)S6 (52-58)TVIII2 (79-82)S11 (101-112)S13 (142-160)S14 (168-170)TVIII9 (184-187)TI2 (163-166)TIV10 (170-173)3H1 (187-189)S15 (190-192)S2 (12-14)S10 (93-98)TII4 (135-138)S12 (116-134)TIV11 (175-178)TVIII8 (178-181)Updating...
connected with : NaN
molecule tags Lyase
source organism Caldicellulosiruptor bescii (strain atcc baa-1888 / dsm 6725 / z-1320)
publication title The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 85
structure length 198
sequence length 198
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2015-03-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4yz0A00
1K5CA 4C2LA 1IDJA 3EQNA 1O8MA 2X6WA 4XLHA 2VJIA 4XN3A 1AIRA 3UW0A 3VSUA 2NT9A 5AMVA 4OJPA 3ZPPA 4YZ0A 4AVZA 4MR0A 2BSPA 3VMWA 1KCCA 2PYHA 3FY3A 3GQ7A 2X6YA 4NK6A 1BHEA 4EW9A 4XLAA 1GQ8A 2INUA 1O8JA 2VJJA 3VSVA 4W8SA 1RU4A 2O04A 4YZQA 3LMWA 4URRA 1IA5A 4NK8A 4XORA 3VSTA 1PE9A 1OFLA 1HG8A 3GRHA 4XLFA 2X3HA 1O8EA 4XKVA 4XM3A 2INVA 1JTAA 5C1CA 4U49A 4PMHA 2NTPA 4XOTA 1QJVA 4W8RA 2QX3A 4XMYA 1O8LA 4XL9A 3B90A 1X0CA 2IQ7A 2NT6A 2O0VA 2PECA 3JURA 2NTQA 4OZYA 1PLUA 1KTWA 4XLEA 4HWVA 4YEJA 1IB4A 3B4NA 2NSPA 1RMGA 1O8DA 1JRGA 1WMRA 1CZFA 1EE6A 1DBGA 4YZXA 3EQOA 4XOPA 1O8KA 2VBEA 4XN0A 2PYGA 2QY1A 4YZAA 3WWGA 1NHCA 2EWEA 4XLCA 2O17A 4XNFA 4XKWA 4YELA 1O8GA 4Z05A 1DBOA 3T9GA 2UVEA 4XONA 1KCDA 4OJ5A 1O8HA 2NTBA 2O1DA 1VBLA 2UVFA 1OGMX 3ZSCA 2NSTA 2VBMA 1OGOX 1XG2A 3GQAA 1BN8A 4MXNA 4Z06A 4OJ6A 4OZZA 4W8TA 3GQ8A 3GQ9A 2VBKA 3SUCA 4W8QA 4OJOA 4I84A 2O0WA 1OOCA 2NZMA 2ODLA 4XR6A 1RWRA 1OFMA 4U4BA 3KRGA 4XQFA 4Z03A 1PXZA 2QXZA 1O8FA 2X6XA 1O88A 1IDKA 4OJLA 1QCXA 5C1EA 2X85A 2Z8GA 3B8YA 3VMVA 1O8IA 1H80A
chains in the Genus database with same CATH superfamily
1K5CA 4C2LA 1IDJA 3EQNA 1O8MA 2X6WA 4XLHA 2VJIA 4XN3A 1AIRA 3UW0A 3VSUA 2B0RA 4KH3A 2NT9A 5AMVA 4OJPA 3ZPPA 4YZ0A 4AVZA 3BH6B 4MR0A 4YC5A 2BSPA 3VMWA 1LLZA 1KCCA 2BX6A 1TYWA 2PYHA 3FY3A 2VFPA 1QA2A 2W7ZA 3GQ7A 2X6YA 4NK6A 3PSZA 1BHEA 1K4ZA 3PSSA 1EA0A 4JRAC 4XLAA 4EW9A 1GQ8A 4YCQA 2VFNA 2INUA 1O8JA 2VJJA 2XT4A 3VSVA 1HF2A 4W8SA 1RU4A 1OFEA 2O04A 3LMWA 4YZQA 4URRA 3TH0A 4NK8A 1IA5A 1OFDA 4XORA 3VSTA 1PE9A 1OFLA 2QYUA 1HG8A 3GRHA 4XLFA 1QRBA 1O8EA 2X3HA 4XKVA 5DNSA 4XM3A 3NAWA 2INVA 1KQ5A 2XTXA 1JTAA 2XT2A 2F3LA 5C1CA 1L1IA 4U49A 4PMHA 2NTPA 4OPWA 4XOTA 1QJVA 1QA3A 4W8RA 2O6WA 2QX3A 4XMYA 2VFMA 3AK5A 1O8LA 4XL9A 2YUHA 1EZGA 1TYVA 1QRCA 3B90A 4YFOA 1X0CA 2IQ7A 2QZAA 5JMCB 2NT6A 2O0VA 2PECA 3JURA 2G0YA 2NTQA 3SY2A 4OZYA 1PLUA 1KTWA 4XLEA 4HWVA 1QQ1A 4YEJA 3RIQA 1QA1A 1IB4A 3B4NA 4OM9A 2NSPA 1RMGA 1O8DA 1JRGA 1WMRA 1CZFA 3PETA 1EE6A 1DBGA 4YZXA 3EQOA 3LJYA 3ML3A 4XOPA 1O8KA 3SZEA 1TSPA 2BM6A 2VBEA 4XN0A 2PYGA 2QY1A 3N90A 4YZAA 3WWGA 4V02C 1NHCA 2EWEA 3SYJA 4XLCA 2O17A 4XNFA 1TYUA 4XKWA 4YELA 1O8GA 4Z05A 1DBOA 2IOUG 4YDTA 3T9GA 2UVEA 4XONA 1KCDA 1CLWA 4OJ5A 1O8HA 4YEIA 2NTBA 5JLVC 2XC1A 2O1DA 1VBLA 2UVFA 1OGMX 2BM7A 3SQVA 3ZSCA 2NSTA 2V5IA 2VBMA 3BH7B 1OGOX 1XG2A 3GQAA 3JX8A 1BN8A 4MXNA 4Z06A 2BM5A 4OJ6A 1TYXA 4OZZA 4W8TA 3GQ8A 2XTWA 3GQ9A 1DABA 2VBKA 3P4GA 4W8QA 3SUCA 2VFQA 4OJOA 2XTYA 3DU1X 4I84A 2O0WA 1OOCA 2VFOA 3LYCA 1LM1A 2NZMA 2ODLA 4XR6A 1RWRA 1K8FA 1OFMA 3H09A 3KRGA 4U4BA 4XQFA 1LLWA 1WXRA 4Z03A 3N6ZA 1PXZA 2J8KA 2QXZA 1O8FA 2X6XA 2BM4A 1O88A 2J8IA 1IDKA 3NB2A 1QCXA 4OJLA 2X85A 5C1EA 2Z8GA 3B8YA 3VMVA 1O8IA 1H80A
chains in the Genus database with same CATH topology
1K5CA 4C2LA 1IDJA 3EQNA 1O8MA 2X6WA 4XLHA 2VJIA 4XN3A 1AIRA 3UW0A 3VSUA 2NT9A 5AMVA 4OJPA 3ZPPA 4YZ0A 4AVZA 4MR0A 2BSPA 3VMWA 1KCCA 2PYHA 3FY3A 3GQ7A 2X6YA 4NK6A 1BHEA 4EW9A 4XLAA 1GQ8A 2INUA 1O8JA 2VJJA 3VSVA 4W8SA 1RU4A 2O04A 4YZQA 3LMWA 4URRA 1IA5A 4NK8A 4XORA 3VSTA 1PE9A 1OFLA 1HG8A 3GRHA 4XLFA 2X3HA 1O8EA 4XKVA 4XM3A 2INVA 1JTAA 5C1CA 4U49A 4PMHA 2NTPA 4XOTA 1QJVA 4W8RA 2QX3A 4XMYA 1O8LA 4XL9A 3B90A 1X0CA 2IQ7A 2NT6A 2O0VA 2PECA 3JURA 2NTQA 4OZYA 1PLUA 1KTWA 4XLEA 4HWVA 4YEJA 1IB4A 3B4NA 2NSPA 1RMGA 1O8DA 1JRGA 1WMRA 1CZFA 1EE6A 1DBGA 4YZXA 3EQOA 4XOPA 1O8KA 2VBEA 4XN0A 2PYGA 2QY1A 4YZAA 3WWGA 1NHCA 2EWEA 4XLCA 2O17A 4XNFA 4XKWA 4YELA 1O8GA 4Z05A 1DBOA 3T9GA 2UVEA 4XONA 1KCDA 4OJ5A 1O8HA 2NTBA 2O1DA 1VBLA 2UVFA 1OGMX 3ZSCA 2NSTA 2VBMA 1OGOX 1XG2A 3GQAA 1BN8A 4MXNA 4Z06A 4OJ6A 4OZZA 4W8TA 3GQ8A 3GQ9A 2VBKA 3SUCA 4W8QA 4OJOA 4I84A 2O0WA 1OOCA 2NZMA 2ODLA 4XR6A 1RWRA 1OFMA 4U4BA 3KRGA 4XQFA 4Z03A 1PXZA 2QXZA 1O8FA 2X6XA 1O88A 1IDKA 4OJLA 1QCXA 5C1EA 2X85A 2Z8GA 3B8YA 3VMVA 1O8IA 1H80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K5C A;  4C2L A;  1IDJ A;  3EQN A;  1O8M A;  2X6W A;  4XLH A;  2VJI A;  4XN3 A;  1AIR A;  3UW0 A;  3VSU A;  2NT9 A;  5AMV A;  4OJP A;  3ZPP A;  4YZ0 A;  4AVZ A;  4MR0 A;  2BSP A;  3VMW A;  1KCC A;  2PYH A;  3FY3 A;  3GQ7 A;  2X6Y A;  4NK6 A;  1BHE A;  4EW9 A;  4XLA A;  1GQ8 A;  2INU A;  1O8J A;  2VJJ A;  3VSV A;  4W8S A;  1RU4 A;  2O04 A;  4YZQ A;  3LMW A;  4URR A;  1IA5 A;  4NK8 A;  4XOR A;  3VST A;  1PE9 A;  1OFL A;  1HG8 A;  3GRH A;  4XLF A;  2X3H A;  1O8E A;  4XKV A;  4XM3 A;  2INV A;  1JTA A;  5C1C A;  4U49 A;  4PMH A;  2NTP A;  4XOT A;  1QJV A;  4W8R A;  2QX3 A;  4XMY A;  1O8L A;  4XL9 A;  3B90 A;  1X0C A;  2IQ7 A;  2NT6 A;  2O0V A;  2PEC A;  3JUR A;  2NTQ A;  4OZY A;  1PLU A;  1KTW A;  4XLE A;  4HWV A;  4YEJ A;  1IB4 A;  3B4N A;  2NSP A;  1RMG A;  1O8D A;  1JRG A;  1WMR A;  1CZF A;  1EE6 A;  1DBG A;  4YZX A;  3EQO A;  4XOP A;  1O8K A;  2VBE A;  4XN0 A;  2PYG A;  2QY1 A;  4YZA A;  3WWG A;  1NHC A;  2EWE A;  4XLC A;  2O17 A;  4XNF A;  4XKW A;  4YEL A;  1O8G A;  4Z05 A;  1DBO A;  3T9G A;  2UVE A;  4XON A;  1KCD A;  4OJ5 A;  1O8H A;  2NTB A;  2O1D A;  1VBL A;  2UVF A;  1OGM X;  3ZSC A;  2NST A;  2VBM A;  1OGO X;  1XG2 A;  3GQA A;  1BN8 A;  4MXN A;  4Z06 A;  4OJ6 A;  4OZZ A;  4W8T A;  3GQ8 A;  3GQ9 A;  2VBK A;  3SUC A;  4W8Q A;  4OJO A;  4I84 A;  2O0W A;  1OOC A;  2NZM A;  2ODL A;  4XR6 A;  1RWR A;  1OFM A;  4U4B A;  3KRG A;  4XQF A;  4Z03 A;  1PXZ A;  2QXZ A;  1O8F A;  2X6X A;  1O88 A;  1IDK A;  4OJL A;  1QCX A;  5C1E A;  2X85 A;  2Z8G A;  3B8Y A;  3VMV A;  1O8I A;  1H80 A; 
#chains in the Genus database with same CATH topology
 1K5C A;  4C2L A;  1IDJ A;  3EQN A;  1O8M A;  2X6W A;  4XLH A;  2VJI A;  4XN3 A;  1AIR A;  3UW0 A;  3VSU A;  2B0R A;  4KH3 A;  2NT9 A;  5AMV A;  4OJP A;  3ZPP A;  4YZ0 A;  4AVZ A;  3BH6 B;  4MR0 A;  4YC5 A;  2BSP A;  3VMW A;  1LLZ A;  1KCC A;  2BX6 A;  1TYW A;  2PYH A;  3FY3 A;  2VFP A;  1QA2 A;  2W7Z A;  3GQ7 A;  2X6Y A;  4NK6 A;  3PSZ A;  1BHE A;  1K4Z A;  3PSS A;  1EA0 A;  4JRA C;  4XLA A;  4EW9 A;  1GQ8 A;  4YCQ A;  2VFN A;  2INU A;  1O8J A;  2VJJ A;  2XT4 A;  3VSV A;  1HF2 A;  4W8S A;  1RU4 A;  1OFE A;  2O04 A;  3LMW A;  4YZQ A;  4URR A;  3TH0 A;  4NK8 A;  1IA5 A;  1OFD A;  4XOR A;  3VST A;  1PE9 A;  1OFL A;  2QYU A;  1HG8 A;  3GRH A;  4XLF A;  1QRB A;  1O8E A;  2X3H A;  4XKV A;  5DNS A;  4XM3 A;  3NAW A;  2INV A;  1KQ5 A;  2XTX A;  1JTA A;  2XT2 A;  2F3L A;  5C1C A;  1L1I A;  4U49 A;  4PMH A;  2NTP A;  4OPW A;  4XOT A;  1QJV A;  1QA3 A;  4W8R A;  2O6W A;  2QX3 A;  4XMY A;  2VFM A;  3AK5 A;  1O8L A;  4XL9 A;  2YUH A;  1EZG A;  1TYV A;  1QRC A;  3B90 A;  4YFO A;  1X0C A;  2IQ7 A;  2QZA A;  5JMC B;  2NT6 A;  2O0V A;  2PEC A;  3JUR A;  2G0Y A;  2NTQ A;  3SY2 A;  4OZY A;  1PLU A;  1KTW A;  4XLE A;  4HWV A;  1QQ1 A;  4YEJ A;  3RIQ A;  1QA1 A;  1IB4 A;  3B4N A;  4OM9 A;  2NSP A;  1RMG A;  1O8D A;  1JRG A;  1WMR A;  1CZF A;  3PET A;  1EE6 A;  1DBG A;  4YZX A;  3EQO A;  3LJY A;  3ML3 A;  4XOP A;  1O8K A;  3SZE A;  1TSP A;  2BM6 A;  2VBE A;  4XN0 A;  2PYG A;  2QY1 A;  3N90 A;  4YZA A;  3WWG A;  4V02 C;  1NHC A;  2EWE A;  3SYJ A;  4XLC A;  2O17 A;  4XNF A;  1TYU A;  4XKW A;  4YEL A;  1O8G A;  4Z05 A;  1DBO A;  2IOU G;  4YDT A;  3T9G A;  2UVE A;  4XON A;  1KCD A;  1CLW A;  4OJ5 A;  1O8H A;  4YEI A;  2NTB A;  5JLV C;  2XC1 A;  2O1D A;  1VBL A;  2UVF A;  1OGM X;  2BM7 A;  3SQV A;  3ZSC A;  2NST A;  2V5I A;  2VBM A;  3BH7 B;  1OGO X;  1XG2 A;  3GQA A;  3JX8 A;  1BN8 A;  4MXN A;  4Z06 A;  2BM5 A;  4OJ6 A;  1TYX A;  4OZZ A;  4W8T A;  3GQ8 A;  2XTW A;  3GQ9 A;  1DAB A;  2VBK A;  3P4G A;  4W8Q A;  3SUC A;  2VFQ A;  4OJO A;  2XTY A;  3DU1 X;  4I84 A;  2O0W A;  1OOC A;  2VFO A;  3LYC A;  1LM1 A;  2NZM A;  2ODL A;  4XR6 A;  1RWR A;  1K8F A;  1OFM A;  3H09 A;  3KRG A;  4U4B A;  4XQF A;  1LLW A;  1WXR A;  4Z03 A;  3N6Z A;  1PXZ A;  2J8K A;  2QXZ A;  1O8F A;  2X6X A;  2BM4 A;  1O88 A;  2J8I A;  1IDK A;  3NB2 A;  1QCX A;  4OJL A;  2X85 A;  5C1E A;  2Z8G A;  3B8Y A;  3VMV A;  1O8I A;  1H80 A; 
#chains in the Genus database with same CATH homology
 1K5C A;  4C2L A;  1IDJ A;  3EQN A;  1O8M A;  2X6W A;  4XLH A;  2VJI A;  4XN3 A;  1AIR A;  3UW0 A;  3VSU A;  2NT9 A;  5AMV A;  4OJP A;  3ZPP A;  4YZ0 A;  4AVZ A;  4MR0 A;  2BSP A;  3VMW A;  1KCC A;  2PYH A;  3FY3 A;  3GQ7 A;  2X6Y A;  4NK6 A;  1BHE A;  4EW9 A;  4XLA A;  1GQ8 A;  2INU A;  1O8J A;  2VJJ A;  3VSV A;  4W8S A;  1RU4 A;  2O04 A;  4YZQ A;  3LMW A;  4URR A;  1IA5 A;  4NK8 A;  4XOR A;  3VST A;  1PE9 A;  1OFL A;  1HG8 A;  3GRH A;  4XLF A;  2X3H A;  1O8E A;  4XKV A;  4XM3 A;  2INV A;  1JTA A;  5C1C A;  4U49 A;  4PMH A;  2NTP A;  4XOT A;  1QJV A;  4W8R A;  2QX3 A;  4XMY A;  1O8L A;  4XL9 A;  3B90 A;  1X0C A;  2IQ7 A;  2NT6 A;  2O0V A;  2PEC A;  3JUR A;  2NTQ A;  4OZY A;  1PLU A;  1KTW A;  4XLE A;  4HWV A;  4YEJ A;  1IB4 A;  3B4N A;  2NSP A;  1RMG A;  1O8D A;  1JRG A;  1WMR A;  1CZF A;  1EE6 A;  1DBG A;  4YZX A;  3EQO A;  4XOP A;  1O8K A;  2VBE A;  4XN0 A;  2PYG A;  2QY1 A;  4YZA A;  3WWG A;  1NHC A;  2EWE A;  4XLC A;  2O17 A;  4XNF A;  4XKW A;  4YEL A;  1O8G A;  4Z05 A;  1DBO A;  3T9G A;  2UVE A;  4XON A;  1KCD A;  4OJ5 A;  1O8H A;  2NTB A;  2O1D A;  1VBL A;  2UVF A;  1OGM X;  3ZSC A;  2NST A;  2VBM A;  1OGO X;  1XG2 A;  3GQA A;  1BN8 A;  4MXN A;  4Z06 A;  4OJ6 A;  4OZZ A;  4W8T A;  3GQ8 A;  3GQ9 A;  2VBK A;  3SUC A;  4W8Q A;  4OJO A;  4I84 A;  2O0W A;  1OOC A;  2NZM A;  2ODL A;  4XR6 A;  1RWR A;  1OFM A;  4U4B A;  3KRG A;  4XQF A;  4Z03 A;  1PXZ A;  2QXZ A;  1O8F A;  2X6X A;  1O88 A;  1IDK A;  4OJL A;  1QCX A;  5C1E A;  2X85 A;  2Z8G A;  3B8Y A;  3VMV A;  1O8I A;  1H80 A; 
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