4C2LA

Crystal structure of endo-xylogalacturonan hydrolase from aspergillus tubingensis
Total Genus 149
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
372
structure length
372
Chain Sequence
AVCTPTAGGDSSTDDVPAITEALSSCGNGGTIVFPEGSTYYLNSVLDLGSCSDCDIQVEGLLKFASDTDYWSGRTAMISVSNVDGLKLRSLTGSGVIDGNGQDAWDLFASDSSYSRPTLLYITGGSNLEISGLRQKNPPNVFNSVKGGATNVVFSNLKMDANSKSDNPPKNTDGFDIGESTYVTITEVTVVNDDDCVAFKPSSNYVTVDTISCTGSHGISVGSLGKSSDDSVKNIYVTGATMINSTKAAGIKTYPSGGDHGTSTVSNVTFNDFTVDNSDYAFQIQSCYGEDDDYCEENPGNAKLTDIVVSSFSGTTSDKYDPVVANLDCGADGTCGISISGFDVKAPSGKSEVLCANTPSDLGVTCTSGASG
5010015020025030035035030025020015010050
050100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (65-68)TI1 (44-47)TII2 (69-72)AH1 (49-61)S6 (95-98)TI3 (101-104)S7 (110-115)S3 (73-76)S8 (118-123)TI2 (82-85)TI5 (124-127)TIV1 (85-88)S5 (88-92)AH2 (135-144)TIV2 (102-105)TI4 (103-106)S11 (160-165)TIV3 (114-117)S12 (168-170)TI6 (145-148)S10 (152-157)S9 (130-132)TI'1 (180-183)S14 (183-194)TIV5 (172-175)S13 (177-180)TII4 (203-206)S17 (231-233)TII5 (234-237)TVIII3 (207-210)S18 (237-248)S15 (209-211)S16 (214-225)S19 (253-258)TVIII4 (229-232)TIV7 (259-262)S20 (264-277)S21 (281-287)TIV6 (247-250)TII'1 (291-294)S22 (297-312)AH3 (326-331)TVIII5 (279-282)TII6 (321-324)S23 (314-319)TIV11 (319-322)S24 (337-350)TI7 (352-355)S26 (368-376)S25 (357-362)TI8 (364-367)S4 (80-81)TII3 (105-108)TVIII6 (312-315)TIV8 (276-279)TVIa1 (354-357)TII1 (61-64)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Aspergillus tubingensis
publication title Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.
pubmed doi rcsb
molecule keywords ENDO-XYLOGALACTURONAN HYDROLASE A
total genus 149
structure length 372
sequence length 372
ec nomenclature ec 3.2.1.-:
pdb deposition date 2013-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4c2lA00
1PLUA 4OJPA 4AVZA 1IA5A 4MXNA 4OJLA 1BN8A 1O8IA 2PYGA 3WWGA 4NK8A 1H80A 4YZXA 1KCDA 2X6XA 3GQAA 2UVFA 1KCCA 1EE6A 2Z8GA 2IQ7A 3LMWA 4YZ0A 2QXZA 4HWVA 5C1EA 4PMHA 3VMWA 1O8KA 1OFLA 4OJOA 1OGOX 1RMGA 2X6YA 4NK6A 4U49A 1O8FA 5AMVA 2VJIA 4XL9A 2INVA 3B4NA 1WMRA 4XLEA 2NTPA 2QX3A 2UVEA 1PXZA 4XOTA 1VBLA 1X0CA 2VBKA 4XOPA 2NZMA 3T9GA 4OZYA 1XG2A 2O17A 4XM3A 1JRGA 3B90A 3UW0A 3VSVA 4MR0A 1QCXA 3ZPPA 3KRGA 2NT9A 3ZSCA 1O8HA 1KTWA 4OJ5A 4XR6A 1O8EA 2O04A 4YZAA 3VSTA 1IB4A 1IDJA 4Z03A 1HG8A 4EW9A 3EQOA 4I84A 1O88A 1O8JA 5C1CA 2PECA 2QY1A 2NTQA 1DBOA 4Z05A 4XMYA 1GQ8A 2X3HA 4XONA 1RWRA 2PYHA 4C2LA 1IDKA 4YELA 1O8GA 4W8TA 1PE9A 2VBEA 4XKVA 4XQFA 3EQNA 2X6WA 4W8QA 4XLFA 3B8YA 4U4BA 2O1DA 1O8LA 3GQ9A 4XNFA 4XN3A 4YZQA 2BSPA 4OZZA 1OOCA 1K5CA 3GQ8A 1NHCA 4Z06A 4URRA 2VBMA 2VJJA 2O0VA 3GQ7A 3FY3A 1BHEA 2EWEA 4XKWA 4XORA 1CZFA 2INUA 1JTAA 3GRHA 3JURA 4XLAA 4W8SA 4W8RA 4XLCA 4XN0A 1OGMX 3SUCA 4YEJA 1OFMA 1O8DA 2NTBA 2NSPA 4OJ6A 1AIRA 4XLHA 1QJVA 1O8MA 1RU4A 3VSUA 3VMVA 1DBGA 2NSTA 2NT6A 2O0WA 2X85A 2ODLA
chains in the Genus database with same CATH superfamily
2BM4A 4OPWA 1PLUA 1EA0A 2IOUG 4OJPA 4AVZA 1IA5A 4MXNA 2G0YA 1TYUA 1TYWA 1BN8A 2ODLA 1O8IA 4OJLA 2XTYA 2PYGA 4OM9A 3WWGA 2V5IA 4NK8A 1H80A 1QRCA 4YZXA 1KCDA 2X6XA 3GQAA 1HF2A 3PSZA 2YUHA 1OFDA 2UVFA 2VFQA 1KCCA 1EE6A 2Z8GA 3BH7B 2IQ7A 3LMWA 3ML3A 1TYVA 4YZ0A 2QXZA 4HWVA 1K8FA 1TSPA 4YEIA 5C1EA 5JMCB 4PMHA 4YFOA 2W7ZA 3VMWA 1O8KA 1OFLA 4OJOA 1OGOX 1EZGA 3LYCA 1RMGA 2X6YA 4NK6A 4U49A 1O8FA 5AMVA 2VJIA 2VFOA 1K4ZA 3SZEA 4XL9A 2INVA 3B4NA 1QA3A 1WMRA 4XLEA 2NTPA 2QX3A 2UVEA 1PXZA 4XOTA 1VBLA 1X0CA 3SYJA 2VBKA 3PSSA 3BH6B 4XOPA 2NZMA 1QA1A 3T9GA 4OZYA 1XG2A 2O17A 4XM3A 1JRGA 3B90A 3SY2A 3UW0A 4MR0A 1QCXA 3VSVA 3ZPPA 2XC1A 3KRGA 1LLWA 3PETA 2NT9A 4JRAC 3ZSCA 1O8HA 1KTWA 4OJ5A 3RIQA 4XR6A 2XTXA 1O8EA 4YDTA 2O04A 2QYUA 4YZAA 3VSTA 3NAWA 1IB4A 1LM1A 1IDJA 3P4GA 4Z03A 1HG8A 4EW9A 1QA2A 3EQOA 4I84A 2BM7A 1O88A 1O8JA 5C1CA 2XT4A 2PECA 2QY1A 2NTQA 3LJYA 1DBOA 4KH3A 4Z05A 4XMYA 3AK5A 1GQ8A 2O6WA 2X3HA 1RWRA 2PYHA 4XONA 4C2LA 1IDKA 4YELA 1O8GA 4W8TA 1DABA 1PE9A 3NB2A 2VBEA 3DU1X 4XKVA 4YCQA 2VFNA 2XT2A 3EQNA 3TH0A 3N6ZA 2X6WA 4YC5A 4XQFA 4W8QA 2BM6A 4XLFA 1QRBA 2VFMA 3B8YA 4U4BA 2O1DA 1QQ1A 1O8LA 2QZAA 3GQ9A 4XNFA 4XN3A 2J8IA 4YZQA 2BSPA 4OZZA 1OOCA 1KQ5A 1K5CA 1CLWA 2BM5A 3GQ8A 1LLZA 4Z06A 3N90A 4V02C 4URRA 3SQVA 2VBMA 2VJJA 2O0VA 3GQ7A 3FY3A 1BHEA 2EWEA 1OFEA 4XKWA 4XORA 2INUA 1JTAA 3GRHA 5JLVC 3JURA 4XLAA 4W8SA 4W8RA 4XLCA 2B0RA 4XN0A 1OGMX 3SUCA 2XTWA 4YEJA 1OFMA 1O8DA 2NTBA 2VFPA 3JX8A 2NSPA 4OJ6A 1AIRA 2J8KA 4XLHA 1QJVA 5DNSA 1NHCA 1L1IA 1O8MA 1RU4A 3H09A 3VSUA 3VMVA 1DBGA 2NSTA 2BX6A 2NT6A 1WXRA 2O0WA 1TYXA 2X85A 1CZFA 2F3LA
chains in the Genus database with same CATH topology
1PLUA 4OJPA 4AVZA 1IA5A 4MXNA 4OJLA 1BN8A 1O8IA 2PYGA 3WWGA 4NK8A 1H80A 4YZXA 1KCDA 2X6XA 3GQAA 2UVFA 1KCCA 1EE6A 2Z8GA 2IQ7A 3LMWA 4YZ0A 2QXZA 4HWVA 5C1EA 4PMHA 3VMWA 1O8KA 1OFLA 4OJOA 1OGOX 1RMGA 2X6YA 4NK6A 4U49A 1O8FA 5AMVA 2VJIA 4XL9A 2INVA 3B4NA 1WMRA 4XLEA 2NTPA 2QX3A 2UVEA 1PXZA 4XOTA 1VBLA 1X0CA 2VBKA 4XOPA 2NZMA 3T9GA 4OZYA 1XG2A 2O17A 4XM3A 1JRGA 3B90A 3UW0A 3VSVA 4MR0A 1QCXA 3ZPPA 3KRGA 2NT9A 3ZSCA 1O8HA 1KTWA 4OJ5A 4XR6A 1O8EA 2O04A 4YZAA 3VSTA 1IB4A 1IDJA 4Z03A 1HG8A 4EW9A 3EQOA 4I84A 1O88A 1O8JA 5C1CA 2PECA 2QY1A 2NTQA 1DBOA 4Z05A 4XMYA 1GQ8A 2X3HA 4XONA 1RWRA 2PYHA 4C2LA 1IDKA 4YELA 1O8GA 4W8TA 1PE9A 2VBEA 4XKVA 4XQFA 3EQNA 2X6WA 4W8QA 4XLFA 3B8YA 4U4BA 2O1DA 1O8LA 3GQ9A 4XNFA 4XN3A 4YZQA 2BSPA 4OZZA 1OOCA 1K5CA 3GQ8A 1NHCA 4Z06A 4URRA 2VBMA 2VJJA 2O0VA 3GQ7A 3FY3A 1BHEA 2EWEA 4XKWA 4XORA 1CZFA 2INUA 1JTAA 3GRHA 3JURA 4XLAA 4W8SA 4W8RA 4XLCA 4XN0A 1OGMX 3SUCA 4YEJA 1OFMA 1O8DA 2NTBA 2NSPA 4OJ6A 1AIRA 4XLHA 1QJVA 1O8MA 1RU4A 3VSUA 3VMVA 1DBGA 2NSTA 2NT6A 2O0WA 2X85A 2ODLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PLU A;  4OJP A;  4AVZ A;  1IA5 A;  4MXN A;  4OJL A;  1BN8 A;  1O8I A;  2PYG A;  3WWG A;  4NK8 A;  1H80 A;  4YZX A;  1KCD A;  2X6X A;  3GQA A;  2UVF A;  1KCC A;  1EE6 A;  2Z8G A;  2IQ7 A;  3LMW A;  4YZ0 A;  2QXZ A;  4HWV A;  5C1E A;  4PMH A;  3VMW A;  1O8K A;  1OFL A;  4OJO A;  1OGO X;  1RMG A;  2X6Y A;  4NK6 A;  4U49 A;  1O8F A;  5AMV A;  2VJI A;  4XL9 A;  2INV A;  3B4N A;  1WMR A;  4XLE A;  2NTP A;  2QX3 A;  2UVE A;  1PXZ A;  4XOT A;  1VBL A;  1X0C A;  2VBK A;  4XOP A;  2NZM A;  3T9G A;  4OZY A;  1XG2 A;  2O17 A;  4XM3 A;  1JRG A;  3B90 A;  3UW0 A;  3VSV A;  4MR0 A;  1QCX A;  3ZPP A;  3KRG A;  2NT9 A;  3ZSC A;  1O8H A;  1KTW A;  4OJ5 A;  4XR6 A;  1O8E A;  2O04 A;  4YZA A;  3VST A;  1IB4 A;  1IDJ A;  4Z03 A;  1HG8 A;  4EW9 A;  3EQO A;  4I84 A;  1O88 A;  1O8J A;  5C1C A;  2PEC A;  2QY1 A;  2NTQ A;  1DBO A;  4Z05 A;  4XMY A;  1GQ8 A;  2X3H A;  4XON A;  1RWR A;  2PYH A;  4C2L A;  1IDK A;  4YEL A;  1O8G A;  4W8T A;  1PE9 A;  2VBE A;  4XKV A;  4XQF A;  3EQN A;  2X6W A;  4W8Q A;  4XLF A;  3B8Y A;  4U4B A;  2O1D A;  1O8L A;  3GQ9 A;  4XNF A;  4XN3 A;  4YZQ A;  2BSP A;  4OZZ A;  1OOC A;  1K5C A;  3GQ8 A;  1NHC A;  4Z06 A;  4URR A;  2VBM A;  2VJJ A;  2O0V A;  3GQ7 A;  3FY3 A;  1BHE A;  2EWE A;  4XKW A;  4XOR A;  1CZF A;  2INU A;  1JTA A;  3GRH A;  3JUR A;  4XLA A;  4W8S A;  4W8R A;  4XLC A;  4XN0 A;  1OGM X;  3SUC A;  4YEJ A;  1OFM A;  1O8D A;  2NTB A;  2NSP A;  4OJ6 A;  1AIR A;  4XLH A;  1QJV A;  1O8M A;  1RU4 A;  3VSU A;  3VMV A;  1DBG A;  2NST A;  2NT6 A;  2O0W A;  2X85 A;  2ODL A; 
#chains in the Genus database with same CATH topology
 2BM4 A;  4OPW A;  1PLU A;  1EA0 A;  2IOU G;  4OJP A;  4AVZ A;  1IA5 A;  4MXN A;  2G0Y A;  1TYU A;  1TYW A;  1BN8 A;  2ODL A;  1O8I A;  4OJL A;  2XTY A;  2PYG A;  4OM9 A;  3WWG A;  2V5I A;  4NK8 A;  1H80 A;  1QRC A;  4YZX A;  1KCD A;  2X6X A;  3GQA A;  1HF2 A;  3PSZ A;  2YUH A;  1OFD A;  2UVF A;  2VFQ A;  1KCC A;  1EE6 A;  2Z8G A;  3BH7 B;  2IQ7 A;  3LMW A;  3ML3 A;  1TYV A;  4YZ0 A;  2QXZ A;  4HWV A;  1K8F A;  1TSP A;  4YEI A;  5C1E A;  5JMC B;  4PMH A;  4YFO A;  2W7Z A;  3VMW A;  1O8K A;  1OFL A;  4OJO A;  1OGO X;  1EZG A;  3LYC A;  1RMG A;  2X6Y A;  4NK6 A;  4U49 A;  1O8F A;  5AMV A;  2VJI A;  2VFO A;  1K4Z A;  3SZE A;  4XL9 A;  2INV A;  3B4N A;  1QA3 A;  1WMR A;  4XLE A;  2NTP A;  2QX3 A;  2UVE A;  1PXZ A;  4XOT A;  1VBL A;  1X0C A;  3SYJ A;  2VBK A;  3PSS A;  3BH6 B;  4XOP A;  2NZM A;  1QA1 A;  3T9G A;  4OZY A;  1XG2 A;  2O17 A;  4XM3 A;  1JRG A;  3B90 A;  3SY2 A;  3UW0 A;  4MR0 A;  1QCX A;  3VSV A;  3ZPP A;  2XC1 A;  3KRG A;  1LLW A;  3PET A;  2NT9 A;  4JRA C;  3ZSC A;  1O8H A;  1KTW A;  4OJ5 A;  3RIQ A;  4XR6 A;  2XTX A;  1O8E A;  4YDT A;  2O04 A;  2QYU A;  4YZA A;  3VST A;  3NAW A;  1IB4 A;  1LM1 A;  1IDJ A;  3P4G A;  4Z03 A;  1HG8 A;  4EW9 A;  1QA2 A;  3EQO A;  4I84 A;  2BM7 A;  1O88 A;  1O8J A;  5C1C A;  2XT4 A;  2PEC A;  2QY1 A;  2NTQ A;  3LJY A;  1DBO A;  4KH3 A;  4Z05 A;  4XMY A;  3AK5 A;  1GQ8 A;  2O6W A;  2X3H A;  1RWR A;  2PYH A;  4XON A;  4C2L A;  1IDK A;  4YEL A;  1O8G A;  4W8T A;  1DAB A;  1PE9 A;  3NB2 A;  2VBE A;  3DU1 X;  4XKV A;  4YCQ A;  2VFN A;  2XT2 A;  3EQN A;  3TH0 A;  3N6Z A;  2X6W A;  4YC5 A;  4XQF A;  4W8Q A;  2BM6 A;  4XLF A;  1QRB A;  2VFM A;  3B8Y A;  4U4B A;  2O1D A;  1QQ1 A;  1O8L A;  2QZA A;  3GQ9 A;  4XNF A;  4XN3 A;  2J8I A;  4YZQ A;  2BSP A;  4OZZ A;  1OOC A;  1KQ5 A;  1K5C A;  1CLW A;  2BM5 A;  3GQ8 A;  1LLZ A;  4Z06 A;  3N90 A;  4V02 C;  4URR A;  3SQV A;  2VBM A;  2VJJ A;  2O0V A;  3GQ7 A;  3FY3 A;  1BHE A;  2EWE A;  1OFE A;  4XKW A;  4XOR A;  2INU A;  1JTA A;  3GRH A;  5JLV C;  3JUR A;  4XLA A;  4W8S A;  4W8R A;  4XLC A;  2B0R A;  4XN0 A;  1OGM X;  3SUC A;  2XTW A;  4YEJ A;  1OFM A;  1O8D A;  2NTB A;  2VFP A;  3JX8 A;  2NSP A;  4OJ6 A;  1AIR A;  2J8K A;  4XLH A;  1QJV A;  5DNS A;  1NHC A;  1L1I A;  1O8M A;  1RU4 A;  3H09 A;  3VSU A;  3VMV A;  1DBG A;  2NST A;  2BX6 A;  2NT6 A;  1WXR A;  2O0W A;  1TYX A;  2X85 A;  1CZF A;  2F3L A; 
#chains in the Genus database with same CATH homology
 1PLU A;  4OJP A;  4AVZ A;  1IA5 A;  4MXN A;  4OJL A;  1BN8 A;  1O8I A;  2PYG A;  3WWG A;  4NK8 A;  1H80 A;  4YZX A;  1KCD A;  2X6X A;  3GQA A;  2UVF A;  1KCC A;  1EE6 A;  2Z8G A;  2IQ7 A;  3LMW A;  4YZ0 A;  2QXZ A;  4HWV A;  5C1E A;  4PMH A;  3VMW A;  1O8K A;  1OFL A;  4OJO A;  1OGO X;  1RMG A;  2X6Y A;  4NK6 A;  4U49 A;  1O8F A;  5AMV A;  2VJI A;  4XL9 A;  2INV A;  3B4N A;  1WMR A;  4XLE A;  2NTP A;  2QX3 A;  2UVE A;  1PXZ A;  4XOT A;  1VBL A;  1X0C A;  2VBK A;  4XOP A;  2NZM A;  3T9G A;  4OZY A;  1XG2 A;  2O17 A;  4XM3 A;  1JRG A;  3B90 A;  3UW0 A;  3VSV A;  4MR0 A;  1QCX A;  3ZPP A;  3KRG A;  2NT9 A;  3ZSC A;  1O8H A;  1KTW A;  4OJ5 A;  4XR6 A;  1O8E A;  2O04 A;  4YZA A;  3VST A;  1IB4 A;  1IDJ A;  4Z03 A;  1HG8 A;  4EW9 A;  3EQO A;  4I84 A;  1O88 A;  1O8J A;  5C1C A;  2PEC A;  2QY1 A;  2NTQ A;  1DBO A;  4Z05 A;  4XMY A;  1GQ8 A;  2X3H A;  4XON A;  1RWR A;  2PYH A;  4C2L A;  1IDK A;  4YEL A;  1O8G A;  4W8T A;  1PE9 A;  2VBE A;  4XKV A;  4XQF A;  3EQN A;  2X6W A;  4W8Q A;  4XLF A;  3B8Y A;  4U4B A;  2O1D A;  1O8L A;  3GQ9 A;  4XNF A;  4XN3 A;  4YZQ A;  2BSP A;  4OZZ A;  1OOC A;  1K5C A;  3GQ8 A;  1NHC A;  4Z06 A;  4URR A;  2VBM A;  2VJJ A;  2O0V A;  3GQ7 A;  3FY3 A;  1BHE A;  2EWE A;  4XKW A;  4XOR A;  1CZF A;  2INU A;  1JTA A;  3GRH A;  3JUR A;  4XLA A;  4W8S A;  4W8R A;  4XLC A;  4XN0 A;  1OGM X;  3SUC A;  4YEJ A;  1OFM A;  1O8D A;  2NTB A;  2NSP A;  4OJ6 A;  1AIR A;  4XLH A;  1QJV A;  1O8M A;  1RU4 A;  3VSU A;  3VMV A;  1DBG A;  2NST A;  2NT6 A;  2O0W A;  2X85 A;  2ODL A; 
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