4YZXA

C. bescii family 3 pectate lyase double mutant k108a/d107n in complex with trigalacturonic acid
Total Genus 81
2040608010012014016018001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
198
structure length
198
Chain Sequence
HHVGTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAANAVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-8)TII1 (1-4)EMPTYS5 (45-47)TII2 (15-18)S3 (19-21)TII3 (48-51)TI'1 (22-25)TIV2 (59-62)S4 (26-29)TIV1 (29-32)TIV4 (82-85)TII'1 (62-65)S8 (66-68)TI2 (38-41)TVIII1 (43-46)S11 (87-89)S9 (72-75)S6 (52-54)TIV3 (74-77)S12 (93-98)S7 (57-58)TVIII2 (79-82)S13 (101-112)TII4 (135-138)S14 (116-134)S15 (142-160)S16 (168-170)TVIII8 (184-187)TI3 (163-166)TIV10 (170-173)3H1 (187-189)S17 (190-192)S2 (12-14)S10 (78-79)TIV11 (175-178)TVIII7 (178-181)Updating...
connected with : NaN
molecule tags Lyase
source organism Caldicellulosiruptor bescii (strain atcc baa-1888 / dsm 6725 / z-1320)
publication title The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 81
structure length 198
sequence length 198
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2015-03-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4yzxA00
2Z8GA 5C1EA 4YZXA 5AMVA 3B90A 4OJLA 2NSPA 4XLCA 4C2LA 3VMWA 4W8SA 4XN0A 4XQFA 3ZPPA 2NZMA 4XNFA 3GQ9A 1NHCA 2X3HA 2INUA 4OZYA 4OZZA 2UVFA 1IDJA 1KCCA 4MXNA 1CZFA 4EW9A 4YELA 2NSTA 2INVA 4URRA 1PE9A 2O17A 1RWRA 2NT9A 1KCDA 2O0WA 1OGMX 1IA5A 3FY3A 3VSVA 4MR0A 4XLAA 3ZSCA 3VSTA 4I84A 2O1DA 4XMYA 2PYHA 4Z03A 2PECA 1H80A 1O8DA 3JURA 2VBEA 2X6WA 1K5CA 4YEJA 3VSUA 1WMRA 1OGOX 2EWEA 4W8TA 2QX3A 1BN8A 3SUCA 4XORA 2X6YA 4NK6A 4XONA 3T9GA 2NTPA 1AIRA 4XLEA 2UVEA 1O8LA 4YZ0A 4U49A 4OJPA 4XKVA 2PYGA 1OOCA 3EQOA 3KRGA 1QCXA 1O8FA 4XN3A 4PMHA 4U4BA 1RMGA 4W8QA 1HG8A 4XL9A 1GQ8A 2VBMA 3GQ7A 1IB4A 1O8EA 1DBOA 3EQNA 4Z05A 2VJIA 1DBGA 3LMWA 2NT6A 2VBKA 2O0VA 2VJJA 1JTAA 4HWVA 5C1CA 4XOPA 2NTQA 4OJOA 4XLHA 1IDKA 1EE6A 1O8IA 1RU4A 2QXZA 1BHEA 1PXZA 3B8YA 3UW0A 4XOTA 4YZAA 3VMVA 2IQ7A 1O8MA 2X6XA 1KTWA 1QJVA 4AVZA 1JRGA 2QY1A 1OFMA 3B4NA 2NTBA 1OFLA 1VBLA 1O8HA 2ODLA 2O04A 4XKWA 4XR6A 4OJ6A 1O8GA 1X0CA 1O8JA 4YZQA 4XLFA 1O8KA 4W8RA 1XG2A 3GQAA 3GQ8A 2X85A 2BSPA 1PLUA 3GRHA 3WWGA 4NK8A 4XM3A 4OJ5A 1O88A 4Z06A
chains in the Genus database with same CATH superfamily
1TYWA 2VFMA 2XTYA 2Z8GA 5C1EA 1QA2A 4YZXA 2G0YA 5AMVA 3B90A 4OJLA 2NSPA 3SY2A 4XLCA 4C2LA 3AK5A 3VMWA 4W8SA 4XN0A 3RIQA 1OFEA 4XQFA 3TH0A 3ZPPA 3SYJA 1TSPA 2NZMA 4XNFA 1CLWA 3GQ9A 1NHCA 2X3HA 2INUA 1DABA 4OZYA 5DNSA 4OZZA 2UVFA 4JRAC 1IDJA 1KCCA 3P4GA 1CZFA 4MXNA 4EW9A 4YELA 2NSTA 3DU1X 2J8IA 1LLWA 2INVA 4URRA 1PE9A 2O17A 3SZEA 1RWRA 2NT9A 1KCDA 2O0WA 3NB2A 1OGMX 1IA5A 3FY3A 3VSVA 4MR0A 4XLAA 3ZSCA 3PSZA 2XC1A 3VSTA 4I84A 2O1DA 2QYUA 4XMYA 2PYHA 4Z03A 2PECA 1HF2A 1H80A 1O8DA 3JURA 2VBEA 2X6WA 1QQ1A 4YEJA 3VSUA 1K5CA 2VFPA 1WMRA 1OGOX 2EWEA 4V02C 4W8TA 2QX3A 1BN8A 3SUCA 4XORA 1K4ZA 2X6YA 4NK6A 3H09A 1OFDA 4XONA 3T9GA 2NTPA 1QRBA 1AIRA 4XLEA 2UVEA 1O8LA 4YFOA 4YZ0A 1LLZA 4YEIA 3N6ZA 4U49A 4OJPA 4XKVA 5JLVC 2PYGA 1OOCA 3EQOA 3KRGA 1QCXA 1O8FA 4XN3A 5JMCB 4PMHA 4U4BA 1RMGA 4W8QA 1HG8A 2VFNA 1GQ8A 4XL9A 3NAWA 2VBMA 3GQ7A 1IB4A 1QA3A 2V5IA 1O8EA 1K8FA 1EZGA 1DBOA 3BH6B 3EQNA 4OM9A 4Z05A 2VJIA 1DBGA 2QZAA 2NT6A 2VBKA 3JX8A 3LMWA 2O0VA 3N90A 2VJJA 1JTAA 4HWVA 5C1CA 4XOPA 2NTQA 4OJOA 2W7ZA 4XLHA 1QA1A 1L1IA 1IDKA 1EE6A 1O8IA 2XT4A 1RU4A 2BM4A 2XTWA 2QXZA 1BHEA 1PXZA 3B8YA 3UW0A 4XOTA 2IOUG 4YZAA 2VFQA 3VMVA 1TYUA 2IQ7A 1O8MA 1QRCA 2BM7A 2X6XA 1KTWA 4OPWA 1QJVA 4AVZA 1JRGA 2QY1A 1OFMA 2B0RA 2O6WA 2VFOA 2XTXA 3B4NA 3ML3A 3PSSA 1LM1A 4YDTA 2J8KA 2NTBA 4YC5A 3BH7B 1OFLA 1VBLA 1O8HA 2ODLA 2O04A 1KQ5A 2BX6A 4XKWA 1WXRA 4XR6A 4OJ6A 1EA0A 1O8GA 2YUHA 3PETA 1X0CA 1O8JA 3LJYA 4YZQA 4KH3A 1TYXA 4XLFA 1O8KA 4W8RA 2XT2A 1XG2A 3GQAA 4YCQA 3GQ8A 2X85A 2BSPA 3SQVA 1PLUA 1TYVA 2BM5A 2F3LA 3GRHA 3WWGA 4NK8A 2BM6A 3LYCA 4XM3A 4OJ5A 1O88A 4Z06A
chains in the Genus database with same CATH topology
2Z8GA 5C1EA 4YZXA 5AMVA 3B90A 4OJLA 2NSPA 4XLCA 4C2LA 3VMWA 4W8SA 4XN0A 4XQFA 3ZPPA 2NZMA 4XNFA 3GQ9A 1NHCA 2X3HA 2INUA 4OZYA 4OZZA 2UVFA 1IDJA 1KCCA 4MXNA 1CZFA 4EW9A 4YELA 2NSTA 2INVA 4URRA 1PE9A 2O17A 1RWRA 2NT9A 1KCDA 2O0WA 1OGMX 1IA5A 3FY3A 3VSVA 4MR0A 4XLAA 3ZSCA 3VSTA 4I84A 2O1DA 4XMYA 2PYHA 4Z03A 2PECA 1H80A 1O8DA 3JURA 2VBEA 2X6WA 1K5CA 4YEJA 3VSUA 1WMRA 1OGOX 2EWEA 4W8TA 2QX3A 1BN8A 3SUCA 4XORA 2X6YA 4NK6A 4XONA 3T9GA 2NTPA 1AIRA 4XLEA 2UVEA 1O8LA 4YZ0A 4U49A 4OJPA 4XKVA 2PYGA 1OOCA 3EQOA 3KRGA 1QCXA 1O8FA 4XN3A 4PMHA 4U4BA 1RMGA 4W8QA 1HG8A 4XL9A 1GQ8A 2VBMA 3GQ7A 1IB4A 1O8EA 1DBOA 3EQNA 4Z05A 2VJIA 1DBGA 3LMWA 2NT6A 2VBKA 2O0VA 2VJJA 1JTAA 4HWVA 5C1CA 4XOPA 2NTQA 4OJOA 4XLHA 1IDKA 1EE6A 1O8IA 1RU4A 2QXZA 1BHEA 1PXZA 3B8YA 3UW0A 4XOTA 4YZAA 3VMVA 2IQ7A 1O8MA 2X6XA 1KTWA 1QJVA 4AVZA 1JRGA 2QY1A 1OFMA 3B4NA 2NTBA 1OFLA 1VBLA 1O8HA 2ODLA 2O04A 4XKWA 4XR6A 4OJ6A 1O8GA 1X0CA 1O8JA 4YZQA 4XLFA 1O8KA 4W8RA 1XG2A 3GQAA 3GQ8A 2X85A 2BSPA 1PLUA 3GRHA 3WWGA 4NK8A 4XM3A 4OJ5A 1O88A 4Z06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z8G A;  5C1E A;  4YZX A;  5AMV A;  3B90 A;  4OJL A;  2NSP A;  4XLC A;  4C2L A;  3VMW A;  4W8S A;  4XN0 A;  4XQF A;  3ZPP A;  2NZM A;  4XNF A;  3GQ9 A;  1NHC A;  2X3H A;  2INU A;  4OZY A;  4OZZ A;  2UVF A;  1IDJ A;  1KCC A;  4MXN A;  1CZF A;  4EW9 A;  4YEL A;  2NST A;  2INV A;  4URR A;  1PE9 A;  2O17 A;  1RWR A;  2NT9 A;  1KCD A;  2O0W A;  1OGM X;  1IA5 A;  3FY3 A;  3VSV A;  4MR0 A;  4XLA A;  3ZSC A;  3VST A;  4I84 A;  2O1D A;  4XMY A;  2PYH A;  4Z03 A;  2PEC A;  1H80 A;  1O8D A;  3JUR A;  2VBE A;  2X6W A;  1K5C A;  4YEJ A;  3VSU A;  1WMR A;  1OGO X;  2EWE A;  4W8T A;  2QX3 A;  1BN8 A;  3SUC A;  4XOR A;  2X6Y A;  4NK6 A;  4XON A;  3T9G A;  2NTP A;  1AIR A;  4XLE A;  2UVE A;  1O8L A;  4YZ0 A;  4U49 A;  4OJP A;  4XKV A;  2PYG A;  1OOC A;  3EQO A;  3KRG A;  1QCX A;  1O8F A;  4XN3 A;  4PMH A;  4U4B A;  1RMG A;  4W8Q A;  1HG8 A;  4XL9 A;  1GQ8 A;  2VBM A;  3GQ7 A;  1IB4 A;  1O8E A;  1DBO A;  3EQN A;  4Z05 A;  2VJI A;  1DBG A;  3LMW A;  2NT6 A;  2VBK A;  2O0V A;  2VJJ A;  1JTA A;  4HWV A;  5C1C A;  4XOP A;  2NTQ A;  4OJO A;  4XLH A;  1IDK A;  1EE6 A;  1O8I A;  1RU4 A;  2QXZ A;  1BHE A;  1PXZ A;  3B8Y A;  3UW0 A;  4XOT A;  4YZA A;  3VMV A;  2IQ7 A;  1O8M A;  2X6X A;  1KTW A;  1QJV A;  4AVZ A;  1JRG A;  2QY1 A;  1OFM A;  3B4N A;  2NTB A;  1OFL A;  1VBL A;  1O8H A;  2ODL A;  2O04 A;  4XKW A;  4XR6 A;  4OJ6 A;  1O8G A;  1X0C A;  1O8J A;  4YZQ A;  4XLF A;  1O8K A;  4W8R A;  1XG2 A;  3GQA A;  3GQ8 A;  2X85 A;  2BSP A;  1PLU A;  3GRH A;  3WWG A;  4NK8 A;  4XM3 A;  4OJ5 A;  1O88 A;  4Z06 A; 
#chains in the Genus database with same CATH topology
 1TYW A;  2VFM A;  2XTY A;  2Z8G A;  5C1E A;  1QA2 A;  4YZX A;  2G0Y A;  5AMV A;  3B90 A;  4OJL A;  2NSP A;  3SY2 A;  4XLC A;  4C2L A;  3AK5 A;  3VMW A;  4W8S A;  4XN0 A;  3RIQ A;  1OFE A;  4XQF A;  3TH0 A;  3ZPP A;  3SYJ A;  1TSP A;  2NZM A;  4XNF A;  1CLW A;  3GQ9 A;  1NHC A;  2X3H A;  2INU A;  1DAB A;  4OZY A;  5DNS A;  4OZZ A;  2UVF A;  4JRA C;  1IDJ A;  1KCC A;  3P4G A;  1CZF A;  4MXN A;  4EW9 A;  4YEL A;  2NST A;  3DU1 X;  2J8I A;  1LLW A;  2INV A;  4URR A;  1PE9 A;  2O17 A;  3SZE A;  1RWR A;  2NT9 A;  1KCD A;  2O0W A;  3NB2 A;  1OGM X;  1IA5 A;  3FY3 A;  3VSV A;  4MR0 A;  4XLA A;  3ZSC A;  3PSZ A;  2XC1 A;  3VST A;  4I84 A;  2O1D A;  2QYU A;  4XMY A;  2PYH A;  4Z03 A;  2PEC A;  1HF2 A;  1H80 A;  1O8D A;  3JUR A;  2VBE A;  2X6W A;  1QQ1 A;  4YEJ A;  3VSU A;  1K5C A;  2VFP A;  1WMR A;  1OGO X;  2EWE A;  4V02 C;  4W8T A;  2QX3 A;  1BN8 A;  3SUC A;  4XOR A;  1K4Z A;  2X6Y A;  4NK6 A;  3H09 A;  1OFD A;  4XON A;  3T9G A;  2NTP A;  1QRB A;  1AIR A;  4XLE A;  2UVE A;  1O8L A;  4YFO A;  4YZ0 A;  1LLZ A;  4YEI A;  3N6Z A;  4U49 A;  4OJP A;  4XKV A;  5JLV C;  2PYG A;  1OOC A;  3EQO A;  3KRG A;  1QCX A;  1O8F A;  4XN3 A;  5JMC B;  4PMH A;  4U4B A;  1RMG A;  4W8Q A;  1HG8 A;  2VFN A;  1GQ8 A;  4XL9 A;  3NAW A;  2VBM A;  3GQ7 A;  1IB4 A;  1QA3 A;  2V5I A;  1O8E A;  1K8F A;  1EZG A;  1DBO A;  3BH6 B;  3EQN A;  4OM9 A;  4Z05 A;  2VJI A;  1DBG A;  2QZA A;  2NT6 A;  2VBK A;  3JX8 A;  3LMW A;  2O0V A;  3N90 A;  2VJJ A;  1JTA A;  4HWV A;  5C1C A;  4XOP A;  2NTQ A;  4OJO A;  2W7Z A;  4XLH A;  1QA1 A;  1L1I A;  1IDK A;  1EE6 A;  1O8I A;  2XT4 A;  1RU4 A;  2BM4 A;  2XTW A;  2QXZ A;  1BHE A;  1PXZ A;  3B8Y A;  3UW0 A;  4XOT A;  2IOU G;  4YZA A;  2VFQ A;  3VMV A;  1TYU A;  2IQ7 A;  1O8M A;  1QRC A;  2BM7 A;  2X6X A;  1KTW A;  4OPW A;  1QJV A;  4AVZ A;  1JRG A;  2QY1 A;  1OFM A;  2B0R A;  2O6W A;  2VFO A;  2XTX A;  3B4N A;  3ML3 A;  3PSS A;  1LM1 A;  4YDT A;  2J8K A;  2NTB A;  4YC5 A;  3BH7 B;  1OFL A;  1VBL A;  1O8H A;  2ODL A;  2O04 A;  1KQ5 A;  2BX6 A;  4XKW A;  1WXR A;  4XR6 A;  4OJ6 A;  1EA0 A;  1O8G A;  2YUH A;  3PET A;  1X0C A;  1O8J A;  3LJY A;  4YZQ A;  4KH3 A;  1TYX A;  4XLF A;  1O8K A;  4W8R A;  2XT2 A;  1XG2 A;  3GQA A;  4YCQ A;  3GQ8 A;  2X85 A;  2BSP A;  3SQV A;  1PLU A;  1TYV A;  2BM5 A;  2F3L A;  3GRH A;  3WWG A;  4NK8 A;  2BM6 A;  3LYC A;  4XM3 A;  4OJ5 A;  1O88 A;  4Z06 A; 
#chains in the Genus database with same CATH homology
 2Z8G A;  5C1E A;  4YZX A;  5AMV A;  3B90 A;  4OJL A;  2NSP A;  4XLC A;  4C2L A;  3VMW A;  4W8S A;  4XN0 A;  4XQF A;  3ZPP A;  2NZM A;  4XNF A;  3GQ9 A;  1NHC A;  2X3H A;  2INU A;  4OZY A;  4OZZ A;  2UVF A;  1IDJ A;  1KCC A;  4MXN A;  1CZF A;  4EW9 A;  4YEL A;  2NST A;  2INV A;  4URR A;  1PE9 A;  2O17 A;  1RWR A;  2NT9 A;  1KCD A;  2O0W A;  1OGM X;  1IA5 A;  3FY3 A;  3VSV A;  4MR0 A;  4XLA A;  3ZSC A;  3VST A;  4I84 A;  2O1D A;  4XMY A;  2PYH A;  4Z03 A;  2PEC A;  1H80 A;  1O8D A;  3JUR A;  2VBE A;  2X6W A;  1K5C A;  4YEJ A;  3VSU A;  1WMR A;  1OGO X;  2EWE A;  4W8T A;  2QX3 A;  1BN8 A;  3SUC A;  4XOR A;  2X6Y A;  4NK6 A;  4XON A;  3T9G A;  2NTP A;  1AIR A;  4XLE A;  2UVE A;  1O8L A;  4YZ0 A;  4U49 A;  4OJP A;  4XKV A;  2PYG A;  1OOC A;  3EQO A;  3KRG A;  1QCX A;  1O8F A;  4XN3 A;  4PMH A;  4U4B A;  1RMG A;  4W8Q A;  1HG8 A;  4XL9 A;  1GQ8 A;  2VBM A;  3GQ7 A;  1IB4 A;  1O8E A;  1DBO A;  3EQN A;  4Z05 A;  2VJI A;  1DBG A;  3LMW A;  2NT6 A;  2VBK A;  2O0V A;  2VJJ A;  1JTA A;  4HWV A;  5C1C A;  4XOP A;  2NTQ A;  4OJO A;  4XLH A;  1IDK A;  1EE6 A;  1O8I A;  1RU4 A;  2QXZ A;  1BHE A;  1PXZ A;  3B8Y A;  3UW0 A;  4XOT A;  4YZA A;  3VMV A;  2IQ7 A;  1O8M A;  2X6X A;  1KTW A;  1QJV A;  4AVZ A;  1JRG A;  2QY1 A;  1OFM A;  3B4N A;  2NTB A;  1OFL A;  1VBL A;  1O8H A;  2ODL A;  2O04 A;  4XKW A;  4XR6 A;  4OJ6 A;  1O8G A;  1X0C A;  1O8J A;  4YZQ A;  4XLF A;  1O8K A;  4W8R A;  1XG2 A;  3GQA A;  3GQ8 A;  2X85 A;  2BSP A;  1PLU A;  3GRH A;  3WWG A;  4NK8 A;  4XM3 A;  4OJ5 A;  1O88 A;  4Z06 A; 
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