4Z06 | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	198
structure length	198
Chain Sequence	HHVGTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAADAVFQLNAPCTFKVKNFTATNIGKLVAQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d00faafe74d78509a08bc88/pdb.gz

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Caldicellulosiruptor bescii (strain atcc baa-1888 / dsm 6725 / z-1320)
publication title	The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase. pubmed doi rcsb
molecule keywords	Pectate lyase
total genus	79
structure length	198
sequence length	198
chains with identical sequence	B
ec nomenclature	ec 4.2.2.2: Pectate lyase.
pdb deposition date	2015-03-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	4z06A00

3VSVA 2NT6A 4YZ0A 1BHEA 4XN3A 1CZFA 2O17A 4U4BA 1O8KA 4YZQA 1PE9A 1OGMX 2UVFA 4XLFA 2VBEA 1O8GA 2O1DA 1O8DA 2NTBA 3GQ9A 1IA5A 2X85A 1XG2A 1O8JA 5AMVA 2O0WA 2EWEA 1O8IA 1JRGA 2PECA 2VJIA 3B90A 4OJLA 4XKVA 4XM3A 1GQ8A 3ZSCA 5C1CA 4OZZA 2QXZA 2UVEA 4EW9A 2O0VA 1HG8A 1QJVA 2NSTA 1RMGA 2INVA 4NK8A 1VBLA 2IQ7A 4PMHA 4XONA 2Z8GA 4YELA 4W8QA 2NSPA 4OZYA 3WWGA 4Z06A 3LMWA 1IDKA 1OFMA 3VSTA 2INUA 2ODLA 3JURA 3B4NA 3GQ7A 4OJ5A 4W8TA 4XR6A 2X6XA 2NTPA 4OJOA 1KCDA 1WMRA 1O8LA 3SUCA 3UW0A 1O8HA 4MR0A 1O8EA 1IB4A 1RWRA 2NTQA 4OJPA 4XQFA 3ZPPA 4W8RA 5C1EA 3GRHA 4I84A 4W8SA 4XLEA 4XOTA 4U49A 3GQAA 1PXZA 4Z03A 4URRA 4XOPA 2X6YA 1OFLA 1PLUA 1RU4A 2VBKA 3VMWA 4XKWA 1O8FA 4XL9A 4OJ6A 4MXNA 3GQ8A 4XN0A 4XLHA 4XNFA 1KCCA 1BN8A 1O88A 4XORA 2QX3A 3B8YA 4HWVA 2X3HA 1OGOX 4XLAA 1NHCA 1EE6A 4XLCA 1O8MA 2BSPA 2NZMA 3KRGA 1X0CA 4YZXA 2QY1A 4NK6A 2X6WA 1KTWA 2VBMA 1OOCA 2PYGA 1JTAA 4Z05A 1IDJA 3EQOA 3FY3A 2NT9A 3EQNA 4C2LA 1DBOA 1QCXA 3T9GA 4AVZA 4YEJA 4YZAA 1AIRA 2O04A 3VMVA 1H80A 4XMYA 3VSUA 2VJJA 1K5CA 2PYHA 1DBGA
chains in the Genus database with same CATH superfamily

2IOUG 3TH0A 3VSVA 2NT6A 4YZ0A 2XT2A 3RIQA 1BHEA 3PSSA 4OM9A 4XN3A 3N6ZA 1CZFA 2O17A 2V5IA 1O8KA 2VFOA 4OPWA 1PE9A 4U4BA 4YZQA 1EA0A 1OGMX 2UVFA 4XLFA 2VBEA 1WXRA 1O8GA 2O1DA 1O8DA 2BM7A 2NTBA 3GQ9A 4YDTA 1OFEA 4YC5A 1IA5A 3JX8A 2X85A 1XG2A 2QZAA 1O8JA 5AMVA 2O0WA 2EWEA 3H09A 1O8IA 1JRGA 2PECA 2VJIA 3B90A 3DU1X 4OJLA 4XKVA 4XM3A 3BH7B 1GQ8A 2G0YA 2VFMA 4OZZA 3ZSCA 5C1CA 2QXZA 1TYUA 2UVEA 4EW9A 2O0VA 1HG8A 2XTWA 1QJVA 2F3LA 2NSTA 1RMGA 2VFQA 2INVA 4NK8A 1VBLA 2IQ7A 4PMHA 4XONA 2Z8GA 4YELA 4W8QA 1KQ5A 2NSPA 4OZYA 3WWGA 1TSPA 4Z06A 3LMWA 1IDKA 1OFMA 2XT4A 2B0RA 3SYJA 3VSTA 2INUA 1HF2A 2ODLA 3JURA 3B4NA 1EZGA 3GQ7A 1LM1A 4OJ5A 4W8TA 4XR6A 2X6XA 2NTPA 4OJOA 1KCDA 5DNSA 1WMRA 1O8LA 3SUCA 3UW0A 1O8HA 3AK5A 5JLVC 4MR0A 1O8EA 4YEIA 1LLWA 1IB4A 1RWRA 2BX6A 2NTQA 4OJPA 4XQFA 3ZPPA 3N90A 4W8RA 5C1EA 3GRHA 4YFOA 2J8IA 4I84A 2O6WA 4W8SA 1TYXA 4YCQA 4XLEA 2BM6A 4XOTA 3PETA 4U49A 3GQAA 1PXZA 1QA2A 2VFPA 4Z03A 4URRA 4XOPA 1K8FA 1OFLA 1QQ1A 1PLUA 2X6YA 1QA1A 1RU4A 2VBKA 1TYWA 3VMWA 1OFDA 2YUHA 5JMCB 4XKWA 1O8FA 4XL9A 4OJ6A 3NB2A 4MXNA 3P4GA 2BM5A 4KH3A 3GQ8A 4XN0A 4XLHA 4XNFA 1LLZA 1L1IA 1KCCA 1BN8A 1O88A 3ML3A 4XORA 2QX3A 3B8YA 4HWVA 3SY2A 3LYCA 2X3HA 1OGOX 4XLAA 1NHCA 1EE6A 1QRBA 2BM4A 4XLCA 1O8MA 2BSPA 2NZMA 3KRGA 1X0CA 4YZXA 2QY1A 4NK6A 2X6WA 1QA3A 1KTWA 2VBMA 2XTXA 2J8KA 2VFNA 1OOCA 3BH6B 1QRCA 1JTAA 2PYGA 4V02C 4Z05A 1IDJA 3SQVA 3EQOA 1K4ZA 3FY3A 1TYVA 2XTYA 2NT9A 3EQNA 4C2LA 2W7ZA 1DBOA 1QCXA 3T9GA 4AVZA 3NAWA 4YEJA 4YZAA 1AIRA 1CLWA 2O04A 3VMVA 2XC1A 1H80A 4XMYA 2QYUA 4JRAC 3VSUA 2VJJA 1DABA 1K5CA 3PSZA 2PYHA 1DBGA 3LJYA 3SZEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3VSV A;  2NT6 A;  4YZ0 A;  1BHE A;  4XN3 A;  1CZF A;  2O17 A;  4U4B A;  1O8K A;  4YZQ A;  1PE9 A;  1OGM X;  2UVF A;  4XLF A;  2VBE A;  1O8G A;  2O1D A;  1O8D A;  2NTB A;  3GQ9 A;  1IA5 A;  2X85 A;  1XG2 A;  1O8J A;  5AMV A;  2O0W A;  2EWE A;  1O8I A;  1JRG A;  2PEC A;  2VJI A;  3B90 A;  4OJL A;  4XKV A;  4XM3 A;  1GQ8 A;  3ZSC A;  5C1C A;  4OZZ A;  2QXZ A;  2UVE A;  4EW9 A;  2O0V A;  1HG8 A;  1QJV A;  2NST A;  1RMG A;  2INV A;  4NK8 A;  1VBL A;  2IQ7 A;  4PMH A;  4XON A;  2Z8G A;  4YEL A;  4W8Q A;  2NSP A;  4OZY A;  3WWG A;  4Z06 A;  3LMW A;  1IDK A;  1OFM A;  3VST A;  2INU A;  2ODL A;  3JUR A;  3B4N A;  3GQ7 A;  4OJ5 A;  4W8T A;  4XR6 A;  2X6X A;  2NTP A;  4OJO A;  1KCD A;  1WMR A;  1O8L A;  3SUC A;  3UW0 A;  1O8H A;  4MR0 A;  1O8E A;  1IB4 A;  1RWR A;  2NTQ A;  4OJP A;  4XQF A;  3ZPP A;  4W8R A;  5C1E A;  3GRH A;  4I84 A;  4W8S A;  4XLE A;  4XOT A;  4U49 A;  3GQA A;  1PXZ A;  4Z03 A;  4URR A;  4XOP A;  2X6Y A;  1OFL A;  1PLU A;  1RU4 A;  2VBK A;  3VMW A;  4XKW A;  1O8F A;  4XL9 A;  4OJ6 A;  4MXN A;  3GQ8 A;  4XN0 A;  4XLH A;  4XNF A;  1KCC A;  1BN8 A;  1O88 A;  4XOR A;  2QX3 A;  3B8Y A;  4HWV A;  2X3H A;  1OGO X;  4XLA A;  1NHC A;  1EE6 A;  4XLC A;  1O8M A;  2BSP A;  2NZM A;  3KRG A;  1X0C A;  4YZX A;  2QY1 A;  4NK6 A;  2X6W A;  1KTW A;  2VBM A;  1OOC A;  2PYG A;  1JTA A;  4Z05 A;  1IDJ A;  3EQO A;  3FY3 A;  2NT9 A;  3EQN A;  4C2L A;  1DBO A;  1QCX A;  3T9G A;  4AVZ A;  4YEJ A;  4YZA A;  1AIR A;  2O04 A;  3VMV A;  1H80 A;  4XMY A;  3VSU A;  2VJJ A;  1K5C A;  2PYH A;  1DBG A; 
#chains in the Genus database with same CATH topology
 2IOU G;  3TH0 A;  3VSV A;  2NT6 A;  4YZ0 A;  2XT2 A;  3RIQ A;  1BHE A;  3PSS A;  4OM9 A;  4XN3 A;  3N6Z A;  1CZF A;  2O17 A;  2V5I A;  1O8K A;  2VFO A;  4OPW A;  1PE9 A;  4U4B A;  4YZQ A;  1EA0 A;  1OGM X;  2UVF A;  4XLF A;  2VBE A;  1WXR A;  1O8G A;  2O1D A;  1O8D A;  2BM7 A;  2NTB A;  3GQ9 A;  4YDT A;  1OFE A;  4YC5 A;  1IA5 A;  3JX8 A;  2X85 A;  1XG2 A;  2QZA A;  1O8J A;  5AMV A;  2O0W A;  2EWE A;  3H09 A;  1O8I A;  1JRG A;  2PEC A;  2VJI A;  3B90 A;  3DU1 X;  4OJL A;  4XKV A;  4XM3 A;  3BH7 B;  1GQ8 A;  2G0Y A;  2VFM A;  4OZZ A;  3ZSC A;  5C1C A;  2QXZ A;  1TYU A;  2UVE A;  4EW9 A;  2O0V A;  1HG8 A;  2XTW A;  1QJV A;  2F3L A;  2NST A;  1RMG A;  2VFQ A;  2INV A;  4NK8 A;  1VBL A;  2IQ7 A;  4PMH A;  4XON A;  2Z8G A;  4YEL A;  4W8Q A;  1KQ5 A;  2NSP A;  4OZY A;  3WWG A;  1TSP A;  4Z06 A;  3LMW A;  1IDK A;  1OFM A;  2XT4 A;  2B0R A;  3SYJ A;  3VST A;  2INU A;  1HF2 A;  2ODL A;  3JUR A;  3B4N A;  1EZG A;  3GQ7 A;  1LM1 A;  4OJ5 A;  4W8T A;  4XR6 A;  2X6X A;  2NTP A;  4OJO A;  1KCD A;  5DNS A;  1WMR A;  1O8L A;  3SUC A;  3UW0 A;  1O8H A;  3AK5 A;  5JLV C;  4MR0 A;  1O8E A;  4YEI A;  1LLW A;  1IB4 A;  1RWR A;  2BX6 A;  2NTQ A;  4OJP A;  4XQF A;  3ZPP A;  3N90 A;  4W8R A;  5C1E A;  3GRH A;  4YFO A;  2J8I A;  4I84 A;  2O6W A;  4W8S A;  1TYX A;  4YCQ A;  4XLE A;  2BM6 A;  4XOT A;  3PET A;  4U49 A;  3GQA A;  1PXZ A;  1QA2 A;  2VFP A;  4Z03 A;  4URR A;  4XOP A;  1K8F A;  1OFL A;  1QQ1 A;  1PLU A;  2X6Y A;  1QA1 A;  1RU4 A;  2VBK A;  1TYW A;  3VMW A;  1OFD A;  2YUH A;  5JMC B;  4XKW A;  1O8F A;  4XL9 A;  4OJ6 A;  3NB2 A;  4MXN A;  3P4G A;  2BM5 A;  4KH3 A;  3GQ8 A;  4XN0 A;  4XLH A;  4XNF A;  1LLZ A;  1L1I A;  1KCC A;  1BN8 A;  1O88 A;  3ML3 A;  4XOR A;  2QX3 A;  3B8Y A;  4HWV A;  3SY2 A;  3LYC A;  2X3H A;  1OGO X;  4XLA A;  1NHC A;  1EE6 A;  1QRB A;  2BM4 A;  4XLC A;  1O8M A;  2BSP A;  2NZM A;  3KRG A;  1X0C A;  4YZX A;  2QY1 A;  4NK6 A;  2X6W A;  1QA3 A;  1KTW A;  2VBM A;  2XTX A;  2J8K A;  2VFN A;  1OOC A;  3BH6 B;  1QRC A;  1JTA A;  2PYG A;  4V02 C;  4Z05 A;  1IDJ A;  3SQV A;  3EQO A;  1K4Z A;  3FY3 A;  1TYV A;  2XTY A;  2NT9 A;  3EQN A;  4C2L A;  2W7Z A;  1DBO A;  1QCX A;  3T9G A;  4AVZ A;  3NAW A;  4YEJ A;  4YZA A;  1AIR A;  1CLW A;  2O04 A;  3VMV A;  2XC1 A;  1H80 A;  4XMY A;  2QYU A;  4JRA C;  3VSU A;  2VJJ A;  1DAB A;  1K5C A;  3PSZ A;  2PYH A;  1DBG A;  3LJY A;  3SZE A; 
#chains in the Genus database with same CATH homology
 3VSV A;  2NT6 A;  4YZ0 A;  1BHE A;  4XN3 A;  1CZF A;  2O17 A;  4U4B A;  1O8K A;  4YZQ A;  1PE9 A;  1OGM X;  2UVF A;  4XLF A;  2VBE A;  1O8G A;  2O1D A;  1O8D A;  2NTB A;  3GQ9 A;  1IA5 A;  2X85 A;  1XG2 A;  1O8J A;  5AMV A;  2O0W A;  2EWE A;  1O8I A;  1JRG A;  2PEC A;  2VJI A;  3B90 A;  4OJL A;  4XKV A;  4XM3 A;  1GQ8 A;  3ZSC A;  5C1C A;  4OZZ A;  2QXZ A;  2UVE A;  4EW9 A;  2O0V A;  1HG8 A;  1QJV A;  2NST A;  1RMG A;  2INV A;  4NK8 A;  1VBL A;  2IQ7 A;  4PMH A;  4XON A;  2Z8G A;  4YEL A;  4W8Q A;  2NSP A;  4OZY A;  3WWG A;  4Z06 A;  3LMW A;  1IDK A;  1OFM A;  3VST A;  2INU A;  2ODL A;  3JUR A;  3B4N A;  3GQ7 A;  4OJ5 A;  4W8T A;  4XR6 A;  2X6X A;  2NTP A;  4OJO A;  1KCD A;  1WMR A;  1O8L A;  3SUC A;  3UW0 A;  1O8H A;  4MR0 A;  1O8E A;  1IB4 A;  1RWR A;  2NTQ A;  4OJP A;  4XQF A;  3ZPP A;  4W8R A;  5C1E A;  3GRH A;  4I84 A;  4W8S A;  4XLE A;  4XOT A;  4U49 A;  3GQA A;  1PXZ A;  4Z03 A;  4URR A;  4XOP A;  2X6Y A;  1OFL A;  1PLU A;  1RU4 A;  2VBK A;  3VMW A;  4XKW A;  1O8F A;  4XL9 A;  4OJ6 A;  4MXN A;  3GQ8 A;  4XN0 A;  4XLH A;  4XNF A;  1KCC A;  1BN8 A;  1O88 A;  4XOR A;  2QX3 A;  3B8Y A;  4HWV A;  2X3H A;  1OGO X;  4XLA A;  1NHC A;  1EE6 A;  4XLC A;  1O8M A;  2BSP A;  2NZM A;  3KRG A;  1X0C A;  4YZX A;  2QY1 A;  4NK6 A;  2X6W A;  1KTW A;  2VBM A;  1OOC A;  2PYG A;  1JTA A;  4Z05 A;  1IDJ A;  3EQO A;  3FY3 A;  2NT9 A;  3EQN A;  4C2L A;  1DBO A;  1QCX A;  3T9G A;  4AVZ A;  4YEJ A;  4YZA A;  1AIR A;  2O04 A;  3VMV A;  1H80 A;  4XMY A;  3VSU A;  2VJJ A;  1K5C A;  2PYH A;  1DBG A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains, but unknotted
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4Z06A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN