5C1C | Genus

Total Genus 111

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	111
sequence length	299
structure length	299
Chain Sequence	ESRTSAPSGCLTVGSDGTYSTIGDALDALGSSTSSACIYVASGTYEEQLTIDYAGDLTLYGETTDTSTYKDNVVTITHTISSPDAGSLDKSATVNVVSDGFSMYNINVENGYGEGAQAVALVGNADQLGFYGCQFSGYQDTLYVKAGTQYYSNCMIEGAVDYIFGDASVWFGECDIVSNGAGAITASSRETSSDSGWYAIDNCNIKAASGVSLTEEVYLGRPWRVLARVIYQNSVLSDIINPKGWTTMADGATPLYYEYNNSGAGSDTSDREYETSISAAVDKTTVLGETWGDWIDRSY

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Aspergillus niger (strain atcc 1015 / cbs 113.46 / fgsc a1144 / lshb ac4 / nctc
publication title	Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control. pubmed doi rcsb
molecule keywords	Pectinesterase
total genus	111
structure length	299
sequence length	299
ec nomenclature	ec 3.1.1.11: Pectinesterase.
pdb deposition date	2015-06-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01095	Pectinesterase	Pectinesterase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	5c1cA00

4XLFA 2NSPA 2BSPA 4YELA 5C1CA 2VJJA 4NK6A 4XNFA 1JTAA 3GQAA 3GQ7A 4XOTA 4MR0A 3VSTA 2X6XA 1KTWA 1O8MA 4XLHA 4Z05A 2INVA 1RMGA 2NSTA 2QX3A 1X0CA 4XMYA 3FY3A 4Z06A 5AMVA 4XM3A 4XONA 1IDKA 1K5CA 1OFLA 1WMRA 2VBMA 1RU4A 2VBKA 4XQFA 2O0WA 1BHEA 2X6YA 3T9GA 1RWRA 1DBOA 3GRHA 1PXZA 4W8RA 4XN0A 2EWEA 4I84A 1KCDA 2O17A 4OJ5A 4YEJA 4PMHA 2X3HA 2X6WA 1EE6A 4OZZA 4U4BA 2UVEA 4W8TA 1NHCA 4NK8A 4OZYA 4W8QA 1O8DA 2O1DA 4C2LA 4OJPA 3ZPPA 4XKWA 2NTQA 1IA5A 3VSUA 1VBLA 3GQ8A 2NT9A 2IQ7A 3EQNA 4XORA 4EW9A 3WWGA 1OFMA 3ZSCA 4U49A 4XOPA 2NTBA 1XG2A 1O88A 3LMWA 1O8FA 3VSVA 1AIRA 2ODLA 4OJLA 1O8HA 1OGOX 4YZ0A 1O8LA 1QCXA 3B90A 1KCCA 2PYGA 1JRGA 4XLAA 4XL9A 3SUCA 4URRA 4XKVA 5C1EA 1OOCA 1O8KA 1O8JA 1CZFA 1DBGA 4YZAA 1PE9A 2INUA 4YZXA 3B4NA 1GQ8A 1H80A 2NT6A 1O8IA 2VBEA 1O8EA 4XN3A 2Z8GA 4OJOA 1IDJA 1IB4A 2VJIA 2O04A 2UVFA 3VMVA 1O8GA 4XLCA 1PLUA 2NZMA 4MXNA 3UW0A 3JURA 1BN8A 3B8YA 4XLEA 4Z03A 2PYHA 2O0VA 1HG8A 3VMWA 2PECA 2NTPA 3KRGA 3EQOA 3GQ9A 4W8SA 4XR6A 2QY1A 4HWVA 1OGMX 4AVZA 4OJ6A 4YZQA 1QJVA 2QXZA 2X85A
chains in the Genus database with same CATH superfamily

4XLFA 2NSPA 2BSPA 4YELA 5C1CA 1QA2A 2VJJA 4YC5A 4NK6A 4XNFA 1JTAA 3GQAA 1DABA 3GQ7A 4XOTA 4MR0A 3SYJA 3VSTA 2X6XA 1KTWA 1O8MA 2QZAA 2XTYA 4XLHA 2BM6A 2QYUA 4Z05A 2INVA 3PETA 1TYXA 1RMGA 2XTWA 2NSTA 2QX3A 3TH0A 1K4ZA 1X0CA 1TYUA 4XMYA 3FY3A 3P4GA 2VFQA 3DU1X 4XM3A 1IDKA 4XONA 4Z06A 1OFLA 1WMRA 2VBMA 1RU4A 2VBKA 4XQFA 1K5CA 3RIQA 2O0WA 2VFNA 2XC1A 1BHEA 1QA3A 3BH6B 4YFOA 2X6YA 3T9GA 1RWRA 1DBOA 3GRHA 1PXZA 5JLVC 4W8RA 4XN0A 2EWEA 4I84A 1KCDA 2O17A 4OJ5A 1QRCA 4YEJA 4PMHA 2X3HA 2X6WA 1EE6A 4OZZA 4U4BA 2UVEA 4YDTA 4V02C 4W8TA 1NHCA 4NK8A 4OZYA 2XT4A 4W8QA 4JRAC 2YUHA 1O8DA 2O1DA 2BM7A 1QA1A 4C2LA 4OJPA 3ZPPA 3BH7B 4XKWA 2NTQA 1IA5A 2V5IA 3NB2A 3VSUA 1VBLA 3GQ8A 2NT9A 2XT2A 2IQ7A 1TSPA 3AK5A 1L1IA 1WXRA 2VFOA 1OFDA 3EQNA 4XORA 3WWGA 1OFMA 3N6ZA 4U49A 4XOPA 3ZSCA 2NTBA 2BM4A 2J8IA 1XG2A 1O88A 3LMWA 3PSSA 3NAWA 1O8FA 3VSVA 1AIRA 1K8FA 2J8KA 2ODLA 2VFPA 4OJLA 4OPWA 1O8HA 1OGOX 1LLWA 4YZ0A 1O8LA 1QCXA 3B90A 3SZEA 1KCCA 2B0RA 2PYGA 1JRGA 4XLAA 4XL9A 1EA0A 3SUCA 1QRBA 4URRA 2G0YA 4XKVA 3SY2A 1TYWA 5C1EA 3H09A 1OOCA 1O8KA 1O8JA 4YEIA 2VFMA 1CZFA 1DBGA 1LLZA 4YZAA 5JMCB 1PE9A 3PSZA 2INUA 4YCQA 4YZXA 1KQ5A 3B4NA 1GQ8A 4KH3A 1H80A 2NT6A 2W7ZA 1O8IA 2VBEA 1O8EA 4XN3A 5AMVA 2Z8GA 4OJOA 2XTXA 1IDJA 1OFEA 2IOUG 2VJIA 2O04A 1IB4A 1LM1A 3JX8A 2UVFA 3VMVA 2BX6A 1O8GA 4XLCA 5DNSA 1PLUA 2NZMA 3ML3A 2O6WA 4MXNA 3UW0A 3LJYA 3SQVA 3JURA 1BN8A 2BM5A 3B8YA 3N90A 4XLEA 2PYHA 4Z03A 2O0VA 1HG8A 1EZGA 1TYVA 2PECA 2NTPA 4OM9A 3VMWA 3KRGA 3EQOA 3GQ9A 3LYCA 4W8SA 4XR6A 2QY1A 4HWVA 1OGMX 2F3LA 4AVZA 4OJ6A 1QQ1A 4YZQA 1QJVA 2QXZA 2X85A 1HF2A 1CLWA 4EW9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4XLF A;  2NSP A;  2BSP A;  4YEL A;  5C1C A;  2VJJ A;  4NK6 A;  4XNF A;  1JTA A;  3GQA A;  3GQ7 A;  4XOT A;  4MR0 A;  3VST A;  2X6X A;  1KTW A;  1O8M A;  4XLH A;  4Z05 A;  2INV A;  1RMG A;  2NST A;  2QX3 A;  1X0C A;  4XMY A;  3FY3 A;  4Z06 A;  5AMV A;  4XM3 A;  4XON A;  1IDK A;  1K5C A;  1OFL A;  1WMR A;  2VBM A;  1RU4 A;  2VBK A;  4XQF A;  2O0W A;  1BHE A;  2X6Y A;  3T9G A;  1RWR A;  1DBO A;  3GRH A;  1PXZ A;  4W8R A;  4XN0 A;  2EWE A;  4I84 A;  1KCD A;  2O17 A;  4OJ5 A;  4YEJ A;  4PMH A;  2X3H A;  2X6W A;  1EE6 A;  4OZZ A;  4U4B A;  2UVE A;  4W8T A;  1NHC A;  4NK8 A;  4OZY A;  4W8Q A;  1O8D A;  2O1D A;  4C2L A;  4OJP A;  3ZPP A;  4XKW A;  2NTQ A;  1IA5 A;  3VSU A;  1VBL A;  3GQ8 A;  2NT9 A;  2IQ7 A;  3EQN A;  4XOR A;  4EW9 A;  3WWG A;  1OFM A;  3ZSC A;  4U49 A;  4XOP A;  2NTB A;  1XG2 A;  1O88 A;  3LMW A;  1O8F A;  3VSV A;  1AIR A;  2ODL A;  4OJL A;  1O8H A;  1OGO X;  4YZ0 A;  1O8L A;  1QCX A;  3B90 A;  1KCC A;  2PYG A;  1JRG A;  4XLA A;  4XL9 A;  3SUC A;  4URR A;  4XKV A;  5C1E A;  1OOC A;  1O8K A;  1O8J A;  1CZF A;  1DBG A;  4YZA A;  1PE9 A;  2INU A;  4YZX A;  3B4N A;  1GQ8 A;  1H80 A;  2NT6 A;  1O8I A;  2VBE A;  1O8E A;  4XN3 A;  2Z8G A;  4OJO A;  1IDJ A;  1IB4 A;  2VJI A;  2O04 A;  2UVF A;  3VMV A;  1O8G A;  4XLC A;  1PLU A;  2NZM A;  4MXN A;  3UW0 A;  3JUR A;  1BN8 A;  3B8Y A;  4XLE A;  4Z03 A;  2PYH A;  2O0V A;  1HG8 A;  3VMW A;  2PEC A;  2NTP A;  3KRG A;  3EQO A;  3GQ9 A;  4W8S A;  4XR6 A;  2QY1 A;  4HWV A;  1OGM X;  4AVZ A;  4OJ6 A;  4YZQ A;  1QJV A;  2QXZ A;  2X85 A; 
#chains in the Genus database with same CATH topology
 4XLF A;  2NSP A;  2BSP A;  4YEL A;  5C1C A;  1QA2 A;  2VJJ A;  4YC5 A;  4NK6 A;  4XNF A;  1JTA A;  3GQA A;  1DAB A;  3GQ7 A;  4XOT A;  4MR0 A;  3SYJ A;  3VST A;  2X6X A;  1KTW A;  1O8M A;  2QZA A;  2XTY A;  4XLH A;  2BM6 A;  2QYU A;  4Z05 A;  2INV A;  3PET A;  1TYX A;  1RMG A;  2XTW A;  2NST A;  2QX3 A;  3TH0 A;  1K4Z A;  1X0C A;  1TYU A;  4XMY A;  3FY3 A;  3P4G A;  2VFQ A;  3DU1 X;  4XM3 A;  1IDK A;  4XON A;  4Z06 A;  1OFL A;  1WMR A;  2VBM A;  1RU4 A;  2VBK A;  4XQF A;  1K5C A;  3RIQ A;  2O0W A;  2VFN A;  2XC1 A;  1BHE A;  1QA3 A;  3BH6 B;  4YFO A;  2X6Y A;  3T9G A;  1RWR A;  1DBO A;  3GRH A;  1PXZ A;  5JLV C;  4W8R A;  4XN0 A;  2EWE A;  4I84 A;  1KCD A;  2O17 A;  4OJ5 A;  1QRC A;  4YEJ A;  4PMH A;  2X3H A;  2X6W A;  1EE6 A;  4OZZ A;  4U4B A;  2UVE A;  4YDT A;  4V02 C;  4W8T A;  1NHC A;  4NK8 A;  4OZY A;  2XT4 A;  4W8Q A;  4JRA C;  2YUH A;  1O8D A;  2O1D A;  2BM7 A;  1QA1 A;  4C2L A;  4OJP A;  3ZPP A;  3BH7 B;  4XKW A;  2NTQ A;  1IA5 A;  2V5I A;  3NB2 A;  3VSU A;  1VBL A;  3GQ8 A;  2NT9 A;  2XT2 A;  2IQ7 A;  1TSP A;  3AK5 A;  1L1I A;  1WXR A;  2VFO A;  1OFD A;  3EQN A;  4XOR A;  3WWG A;  1OFM A;  3N6Z A;  4U49 A;  4XOP A;  3ZSC A;  2NTB A;  2BM4 A;  2J8I A;  1XG2 A;  1O88 A;  3LMW A;  3PSS A;  3NAW A;  1O8F A;  3VSV A;  1AIR A;  1K8F A;  2J8K A;  2ODL A;  2VFP A;  4OJL A;  4OPW A;  1O8H A;  1OGO X;  1LLW A;  4YZ0 A;  1O8L A;  1QCX A;  3B90 A;  3SZE A;  1KCC A;  2B0R A;  2PYG A;  1JRG A;  4XLA A;  4XL9 A;  1EA0 A;  3SUC A;  1QRB A;  4URR A;  2G0Y A;  4XKV A;  3SY2 A;  1TYW A;  5C1E A;  3H09 A;  1OOC A;  1O8K A;  1O8J A;  4YEI A;  2VFM A;  1CZF A;  1DBG A;  1LLZ A;  4YZA A;  5JMC B;  1PE9 A;  3PSZ A;  2INU A;  4YCQ A;  4YZX A;  1KQ5 A;  3B4N A;  1GQ8 A;  4KH3 A;  1H80 A;  2NT6 A;  2W7Z A;  1O8I A;  2VBE A;  1O8E A;  4XN3 A;  5AMV A;  2Z8G A;  4OJO A;  2XTX A;  1IDJ A;  1OFE A;  2IOU G;  2VJI A;  2O04 A;  1IB4 A;  1LM1 A;  3JX8 A;  2UVF A;  3VMV A;  2BX6 A;  1O8G A;  4XLC A;  5DNS A;  1PLU A;  2NZM A;  3ML3 A;  2O6W A;  4MXN A;  3UW0 A;  3LJY A;  3SQV A;  3JUR A;  1BN8 A;  2BM5 A;  3B8Y A;  3N90 A;  4XLE A;  2PYH A;  4Z03 A;  2O0V A;  1HG8 A;  1EZG A;  1TYV A;  2PEC A;  2NTP A;  4OM9 A;  3VMW A;  3KRG A;  3EQO A;  3GQ9 A;  3LYC A;  4W8S A;  4XR6 A;  2QY1 A;  4HWV A;  1OGM X;  2F3L A;  4AVZ A;  4OJ6 A;  1QQ1 A;  4YZQ A;  1QJV A;  2QXZ A;  2X85 A;  1HF2 A;  1CLW A;  4EW9 A; 
#chains in the Genus database with same CATH homology
 4XLF A;  2NSP A;  2BSP A;  4YEL A;  5C1C A;  2VJJ A;  4NK6 A;  4XNF A;  1JTA A;  3GQA A;  3GQ7 A;  4XOT A;  4MR0 A;  3VST A;  2X6X A;  1KTW A;  1O8M A;  4XLH A;  4Z05 A;  2INV A;  1RMG A;  2NST A;  2QX3 A;  1X0C A;  4XMY A;  3FY3 A;  4Z06 A;  5AMV A;  4XM3 A;  4XON A;  1IDK A;  1K5C A;  1OFL A;  1WMR A;  2VBM A;  1RU4 A;  2VBK A;  4XQF A;  2O0W A;  1BHE A;  2X6Y A;  3T9G A;  1RWR A;  1DBO A;  3GRH A;  1PXZ A;  4W8R A;  4XN0 A;  2EWE A;  4I84 A;  1KCD A;  2O17 A;  4OJ5 A;  4YEJ A;  4PMH A;  2X3H A;  2X6W A;  1EE6 A;  4OZZ A;  4U4B A;  2UVE A;  4W8T A;  1NHC A;  4NK8 A;  4OZY A;  4W8Q A;  1O8D A;  2O1D A;  4C2L A;  4OJP A;  3ZPP A;  4XKW A;  2NTQ A;  1IA5 A;  3VSU A;  1VBL A;  3GQ8 A;  2NT9 A;  2IQ7 A;  3EQN A;  4XOR A;  4EW9 A;  3WWG A;  1OFM A;  3ZSC A;  4U49 A;  4XOP A;  2NTB A;  1XG2 A;  1O88 A;  3LMW A;  1O8F A;  3VSV A;  1AIR A;  2ODL A;  4OJL A;  1O8H A;  1OGO X;  4YZ0 A;  1O8L A;  1QCX A;  3B90 A;  1KCC A;  2PYG A;  1JRG A;  4XLA A;  4XL9 A;  3SUC A;  4URR A;  4XKV A;  5C1E A;  1OOC A;  1O8K A;  1O8J A;  1CZF A;  1DBG A;  4YZA A;  1PE9 A;  2INU A;  4YZX A;  3B4N A;  1GQ8 A;  1H80 A;  2NT6 A;  1O8I A;  2VBE A;  1O8E A;  4XN3 A;  2Z8G A;  4OJO A;  1IDJ A;  1IB4 A;  2VJI A;  2O04 A;  2UVF A;  3VMV A;  1O8G A;  4XLC A;  1PLU A;  2NZM A;  4MXN A;  3UW0 A;  3JUR A;  1BN8 A;  3B8Y A;  4XLE A;  4Z03 A;  2PYH A;  2O0V A;  1HG8 A;  3VMW A;  2PEC A;  2NTP A;  3KRG A;  3EQO A;  3GQ9 A;  4W8S A;  4XR6 A;  2QY1 A;  4HWV A;  1OGM X;  4AVZ A;  4OJ6 A;  4YZQ A;  1QJV A;  2QXZ A;  2X85 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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5C1CA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations