5JMCB

Receptor binding domain of botulinum neurotoxin a in complex with rat sv2c
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
91
structure length
91
Chain Sequence
DKYANFSINFTMENQVHTGMEYDNGRFLGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQNCSFLHNK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Clostridium botulinum
publication title N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
pubmed doi rcsb
molecule keywords Botulinum neurotoxin type A
total genus 36
structure length 91
sequence length 91
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2016-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 5jmcB00
2W7ZA 3N90A 2BM6A 2F3LA 2BM4A 4JRAC 5JMCB 2G0YA 2BM5A 2J8IA 5JLVC 2BM7A
chains in the Genus database with same CATH superfamily
4U49A 1HG8A 4W8SA 2INVA 1KCCA 2INUA 2O04A 2O0WA 3BH7B 1RWRA 2IQ7A 4KH3A 3B90A 1WXRA 3DU1X 1TYXA 3SUCA 4XOTA 2QYUA 2VFOA 1O8GA 1QRBA 3LYCA 4XQFA 1TYWA 3ZSCA 4XLHA 2Z8GA 4XM3A 4YC5A 2VFPA 1TSPA 2VJIA 4XORA 2BM4A 4OJ6A 4I84A 3JX8A 1PE9A 1IB4A 1KCDA 3SY2A 4YEJA 4C2LA 4XL9A 2QZAA 4NK6A 1LLWA 3N90A 4YZXA 1QA1A 1EA0A 2NTBA 2X6YA 4XLCA 4XOPA 4XKVA 3WWGA 4OJ5A 1O88A 1O8MA 3LMWA 4XMYA 4MR0A 4XLEA 2BM7A 2VFNA 4W8QA 3VSVA 4YELA 4YZ0A 2O6WA 2X6WA 1O8EA 1RU4A 2XT4A 4AVZA 2NT9A 4XR6A 5C1EA 1X0CA 1KQ5A 2J8IA 2X6XA 3GQ9A 2VFQA 4YZQA 5JMCB 1O8DA 1OGOX 2NSTA 4NK8A 1TYUA 1WMRA 1DBOA 1XG2A 3PSSA 2VBMA 4YDTA 3VMVA 3PETA 4XLFA 2NSPA 4YCQA 2VFMA 1QA3A 2UVFA 3LJYA 4XN3A 1O8FA 3EQOA 3FY3A 1CLWA 1OFDA 1QA2A 1QRCA 4PMHA 2BX6A 3NAWA 4Z06A 2IOUG 4XONA 1O8IA 1OOCA 1IA5A 4OJPA 2VBEA 2XTYA 2VBKA 4HWVA 1O8KA 1OGMX 2O1DA 2BSPA 4OJLA 2W7ZA 2BM6A 4Z03A 2NTPA 1QJVA 1EE6A 1GQ8A 1QQ1A 3NB2A 2XTXA 1O8HA 1OFEA 2PYHA 1K8FA 1RMGA 2QXZA 4YZAA 1LLZA 1OFMA 3GQ8A 2XTWA 2XT2A 3KRGA 4OM9A 2NT6A 5DNSA 3ML3A 4Z05A 3SQVA 3GQAA 4W8TA 1IDJA 1O8LA 3AK5A 1H80A 1CZFA 3B8YA 1BHEA 5C1CA 4MXNA 3TH0A 1TYVA 2PYGA 4JRAC 3UW0A 4V02C 2QX3A 4XLAA 4OZZA 1EZGA 2J8KA 2X85A 1LM1A 3GRHA 2PECA 1L1IA 3SYJA 3H09A 3JURA 1PLUA 2VJJA 4XN0A 3N6ZA 2EWEA 1DABA 4EW9A 5JLVC 1HF2A 3VSTA 2X3HA 1JRGA 2NZMA 1K5CA 2G0YA 3B4NA 2BM5A 4YFOA 1AIRA 2YUHA 3SZEA 3GQ7A 1KTWA 5AMVA 2XC1A 4OJOA 4U4BA 1VBLA 3ZPPA 1IDKA 2UVEA 1BN8A 3EQNA 4OZYA 2ODLA 2QY1A 4OPWA 1NHCA 1K4ZA 1QCXA 3BH6B 3T9GA 4YEIA 1JTAA 2O17A 1DBGA 1OFLA 1O8JA 2B0RA 3P4GA 2O0VA 2F3LA 3RIQA 4URRA 3VMWA 3PSZA 2V5IA 4XKWA 1PXZA 3VSUA 2NTQA 4XNFA 4W8RA
chains in the Genus database with same CATH topology
2VFNA 2W7ZA 4OJLA 2BM6A 1QQ1A 3BH7B 2G0YA 2BM5A 4KH3A 2YUHA 1K8FA 3SZEA 1KQ5A 1WXRA 1TYXA 2J8IA 2XC1A 4OJOA 4OM9A 2VFQA 2VFOA 3LYCA 1QRBA 3ML3A 5JMCB 1TYWA 1TYUA 2VFPA 1TSPA 3AK5A 3PETA 4OPWA 2VFMA 1QA3A 2BM4A 1K4ZA 4OJ6A 1TYVA 3TH0A 4JRAC 3JX8A 3BH6B 3LJYA 4V02C 1CLWA 1QA2A 1QRCA 2B0RA 3N90A 3P4GA 2BX6A 2F3LA 3RIQA 2IOUG 3SYJA 1QA1A 3H09A 2V5IA 4OJ5A 3N6ZA 4OJPA 1DABA 5JLVC 1HF2A 2BM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W7Z A;  3N90 A;  2BM6 A;  2F3L A;  2BM4 A;  4JRA C;  5JMC B;  2G0Y A;  2BM5 A;  2J8I A;  5JLV C;  2BM7 A; 
#chains in the Genus database with same CATH topology
 4U49 A;  1HG8 A;  4W8S A;  2INV A;  1KCC A;  2INU A;  2O04 A;  2O0W A;  3BH7 B;  1RWR A;  2IQ7 A;  4KH3 A;  3B90 A;  1WXR A;  3DU1 X;  1TYX A;  3SUC A;  4XOT A;  2QYU A;  2VFO A;  1O8G A;  1QRB A;  3LYC A;  4XQF A;  1TYW A;  3ZSC A;  4XLH A;  2Z8G A;  4XM3 A;  4YC5 A;  2VFP A;  1TSP A;  2VJI A;  4XOR A;  2BM4 A;  4OJ6 A;  4I84 A;  3JX8 A;  1PE9 A;  1IB4 A;  1KCD A;  3SY2 A;  4YEJ A;  4C2L A;  4XL9 A;  2QZA A;  4NK6 A;  1LLW A;  3N90 A;  4YZX A;  1QA1 A;  1EA0 A;  2NTB A;  2X6Y A;  4XLC A;  4XOP A;  4XKV A;  3WWG A;  4OJ5 A;  1O88 A;  1O8M A;  3LMW A;  4XMY A;  4MR0 A;  4XLE A;  2BM7 A;  2VFN A;  4W8Q A;  3VSV A;  4YEL A;  4YZ0 A;  2O6W A;  2X6W A;  1O8E A;  1RU4 A;  2XT4 A;  4AVZ A;  2NT9 A;  4XR6 A;  5C1E A;  1X0C A;  1KQ5 A;  2J8I A;  2X6X A;  3GQ9 A;  2VFQ A;  4YZQ A;  5JMC B;  1O8D A;  1OGO X;  2NST A;  4NK8 A;  1TYU A;  1WMR A;  1DBO A;  1XG2 A;  3PSS A;  2VBM A;  4YDT A;  3VMV A;  3PET A;  4XLF A;  2NSP A;  4YCQ A;  2VFM A;  1QA3 A;  2UVF A;  3LJY A;  4XN3 A;  1O8F A;  3EQO A;  3FY3 A;  1CLW A;  1OFD A;  1QA2 A;  1QRC A;  4PMH A;  2BX6 A;  3NAW A;  4Z06 A;  2IOU G;  4XON A;  1O8I A;  1OOC A;  1IA5 A;  4OJP A;  2VBE A;  2XTY A;  2VBK A;  4HWV A;  1O8K A;  1OGM X;  2O1D A;  2BSP A;  4OJL A;  2W7Z A;  2BM6 A;  4Z03 A;  2NTP A;  1QJV A;  1EE6 A;  1GQ8 A;  1QQ1 A;  3NB2 A;  2XTX A;  1O8H A;  1OFE A;  2PYH A;  1K8F A;  1RMG A;  2QXZ A;  4YZA A;  1LLZ A;  1OFM A;  3GQ8 A;  2XTW A;  2XT2 A;  3KRG A;  4OM9 A;  2NT6 A;  5DNS A;  3ML3 A;  4Z05 A;  3SQV A;  3GQA A;  4W8T A;  1IDJ A;  1O8L A;  3AK5 A;  1H80 A;  1CZF A;  3B8Y A;  1BHE A;  5C1C A;  4MXN A;  3TH0 A;  1TYV A;  2PYG A;  4JRA C;  3UW0 A;  4V02 C;  2QX3 A;  4XLA A;  4OZZ A;  1EZG A;  2J8K A;  2X85 A;  1LM1 A;  3GRH A;  2PEC A;  1L1I A;  3SYJ A;  3H09 A;  3JUR A;  1PLU A;  2VJJ A;  4XN0 A;  3N6Z A;  2EWE A;  1DAB A;  4EW9 A;  5JLV C;  1HF2 A;  3VST A;  2X3H A;  1JRG A;  2NZM A;  1K5C A;  2G0Y A;  3B4N A;  2BM5 A;  4YFO A;  1AIR A;  2YUH A;  3SZE A;  3GQ7 A;  1KTW A;  5AMV A;  2XC1 A;  4OJO A;  4U4B A;  1VBL A;  3ZPP A;  1IDK A;  2UVE A;  1BN8 A;  3EQN A;  4OZY A;  2ODL A;  2QY1 A;  4OPW A;  1NHC A;  1K4Z A;  1QCX A;  3BH6 B;  3T9G A;  4YEI A;  1JTA A;  2O17 A;  1DBG A;  1OFL A;  1O8J A;  2B0R A;  3P4G A;  2O0V A;  2F3L A;  3RIQ A;  4URR A;  3VMW A;  3PSZ A;  2V5I A;  4XKW A;  1PXZ A;  3VSU A;  2NTQ A;  4XNF A;  4W8R A; 
#chains in the Genus database with same CATH homology
 2VFN A;  2W7Z A;  4OJL A;  2BM6 A;  1QQ1 A;  3BH7 B;  2G0Y A;  2BM5 A;  4KH3 A;  2YUH A;  1K8F A;  3SZE A;  1KQ5 A;  1WXR A;  1TYX A;  2J8I A;  2XC1 A;  4OJO A;  4OM9 A;  2VFQ A;  2VFO A;  3LYC A;  1QRB A;  3ML3 A;  5JMC B;  1TYW A;  1TYU A;  2VFP A;  1TSP A;  3AK5 A;  3PET A;  4OPW A;  2VFM A;  1QA3 A;  2BM4 A;  1K4Z A;  4OJ6 A;  1TYV A;  3TH0 A;  4JRA C;  3JX8 A;  3BH6 B;  3LJY A;  4V02 C;  1CLW A;  1QA2 A;  1QRC A;  2B0R A;  3N90 A;  3P4G A;  2BX6 A;  2F3L A;  3RIQ A;  2IOU G;  3SYJ A;  1QA1 A;  3H09 A;  2V5I A;  4OJ5 A;  3N6Z A;  4OJP A;  1DAB A;  5JLV C;  1HF2 A;  2BM7 A; 
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