2XC1 | Genus

Total Genus 218

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	218
sequence length	660
structure length	660
Chain Sequence	VVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKWDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfdee189d27cb8b9302788a/pdb.gz): 2315 ms

reading 660 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

660 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 44 ms

Adding embedded #jmolscript: select ({0:659});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Enterobacteria phage p22
publication title	Bacteriophage P22 Tailspike: Structure of the Complete Protein and Function of the Interdomain Linker pubmed doi rcsb
molecule keywords	BIFUNCTIONAL TAIL PROTEIN
total genus	218
structure length	660
sequence length	660
chains with identical sequence	B, C
ec nomenclature	ec 3.2.1.-:
pdb deposition date	2010-04-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09251	PhageP22-tail	Salmonella phage P22 tail-spike

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	2xc1A02
2.170.14.10	Mainly Beta	Beta Complex	Tailspike Protein; Chain	Phage P22 tailspike-like, N-terminal domain	2xc1A01

1TSPA 1TYWA 1TYVA 1QQ1A 2VFPA 3H09A 1DABA 3ML3A 3SZEA 2IOUG 3SYJA 1CLWA 3TH0A 1TYUA 1LKTA 2VFOA 1QA3A 1QA1A 4KH3A 4OM9A 3RIQA 2V5IA 2VFQA 2XC1A 1QRBA 1TYXA 2VFNA 2VFMA 1WXRA 3AK5A 2VKYB 1QRCA 1QA2A 2VNLA
chains in the Genus database with same CATH superfamily

4OZYA 3FY3A 3JX8A 2BM5A 2XTXA 1VBLA 2VBEA 4NK6A 1DABA 1OOCA 3ML3A 4OJ5A 4XLFA 1OGMX 1KQ5A 3LYCA 1HG8A 1PE9A 4JRAC 2X6WA 3EQNA 1TYUA 3SQVA 4URRA 2NT9A 3VMVA 3LJYA 1IA5A 2VFOA 2IQ7A 2XTYA 2QYUA 3B4NA 1OFLA 4KH3A 4OM9A 4Z05A 4Z06A 1BN8A 1JTAA 2YUHA 5AMVA 4YEIA 4XQFA 1WMRA 1K4ZA 1IB4A 2O1DA 2UVFA 4YZ0A 1OFEA 4AVZA 2O0WA 1IDKA 4XL9A 3WWGA 2ODLA 2EWEA 2VNLA 3PETA 4YZAA 4C2LA 5C1CA 1RMGA 1TSPA 1PXZA 1QQ1A 3H09A 2O04A 2UVEA 1O8DA 2VBKA 1CZFA 2BM7A 2NTPA 3SYJA 2J8KA 2O17A 3NAWA 3GQ7A 5JLVC 3TH0A 4XN0A 2NTQA 1O88A 2O6WA 4OJOA 2W7ZA 3EQOA 4XOTA 3B8YA 1QA3A 1QA1A 2XTWA 3ZPPA 3BH7B 2F3LA 3GRHA 2XT4A 4YELA 4YDTA 3ZSCA 1KTWA 3JURA 4I84A 2NSPA 4U4BA 1TYXA 3UW0A 5C1EA 4Z03A 2VFNA 2VFMA 3AK5A 4XORA 4XLCA 1DBGA 2VKYB 2VJJA 2B0RA 5DNSA 3GQAA 1QA2A 1EA0A 1RWRA 5JMCB 2X6YA 1O8KA 4MXNA 1K8FA 4W8QA 4YZQA 1TYVA 4XNFA 1O8LA 2VFPA 4W8RA 3T9GA 2BX6A 2X3HA 4YCQA 2NTBA 2BM4A 1OFMA 1O8IA 1HF2A 1O8EA 1CLWA 3NB2A 4XMYA 4OJPA 1LKTA 4V02C 1O8HA 1RU4A 1O8MA 3LMWA 1X0CA 2QY1A 4YC5A 4YZXA 2NZMA 4MR0A 2J8IA 3RIQA 3SY2A 1XG2A 2INVA 2VFQA 2QZAA 2PYGA 1QRBA 1OFDA 2XT2A 1LLWA 2QXZA 4XKVA 1JRGA 3DU1X 3N90A 3N6ZA 2NT6A 2VJIA 4OPWA 4W8SA 2PECA 2INUA 4NK8A 4XKWA 4XR6A 4EW9A 3B90A 4OZZA 1TYWA 1LLZA 3VSVA 1O8JA 3VMWA 1O8FA 4XLEA 3SZEA 3GQ8A 1K5CA 3VSTA 2X6XA 3SUCA 2IOUG 1QJVA 4XOPA 1L1IA 2BSPA 1EE6A 2PYHA 1KCDA 2O0VA 4XN3A 1OGOX 4OJ6A 4XM3A 3GQ9A 4XLHA 3P4GA 2BM6A 4YFOA 3PSZA 4OJLA 1LM1A 3PSSA 2QX3A 3VSUA 1IDJA 1O8GA 1PLUA 2V5IA 2G0YA 3KRGA 4HWVA 4U49A 4YEJA 2XC1A 2NSTA 4W8TA 4XONA 1NHCA 1AIRA 2Z8GA 1EZGA 1BHEA 3BH6B 2X85A 1WXRA 1H80A 4PMHA 4XLAA 2VBMA 1QRCA 1KCCA 1GQ8A 1QCXA 1DBOA
chains in the Genus database with same CATH topology

1K8FA 1TSPA 1TYWA 1TYVA 1QQ1A 3JX8A 2VFPA 2BM5A 3H09A 2BX6A 1DABA 3ML3A 4OJ5A 3SZEA 2BM7A 2BM4A 1KQ5A 2IOUG 3LYCA 4JRAC 1HF2A 3SYJA 1CLWA 5JLVC 3TH0A 4OJOA 1TYUA 4OJ6A 2W7ZA 4OJPA 1LKTA 3LJYA 4V02C 5JMCB 2VFOA 1QA3A 3P4GA 1QA1A 2BM6A 3BH7B 4KH3A 2F3LA 2J8IA 4OJLA 4OM9A 3RIQA 2V5IA 2VFQA 2G0YA 2YUHA 2XC1A 1QRBA 1TYXA 2VFNA 2VFMA 1K4ZA 3BH6B 1WXRA 3AK5A 2VKYB 3N6ZA 3N90A 1QRCA 2B0RA 4OPWA 1QA2A 2VNLA 3PETA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1TSP A;  1TYW A;  1TYV A;  1QQ1 A;  2VFP A;  3H09 A;  1DAB A;  3ML3 A;  3SZE A;  2IOU G;  3SYJ A;  1CLW A;  3TH0 A;  1TYU A;  1LKT A;  2VFO A;  1QA3 A;  1QA1 A;  4KH3 A;  4OM9 A;  3RIQ A;  2V5I A;  2VFQ A;  2XC1 A;  1QRB A;  1TYX A;  2VFN A;  2VFM A;  1WXR A;  3AK5 A;  2VKY B;  1QRC A;  1QA2 A;  2VNL A; 
#chains in the Genus database with same CATH topology
 4OZY A;  3FY3 A;  3JX8 A;  2BM5 A;  2XTX A;  1VBL A;  2VBE A;  4NK6 A;  1DAB A;  1OOC A;  3ML3 A;  4OJ5 A;  4XLF A;  1OGM X;  1KQ5 A;  3LYC A;  1HG8 A;  1PE9 A;  4JRA C;  2X6W A;  3EQN A;  1TYU A;  3SQV A;  4URR A;  2NT9 A;  3VMV A;  3LJY A;  1IA5 A;  2VFO A;  2IQ7 A;  2XTY A;  2QYU A;  3B4N A;  1OFL A;  4KH3 A;  4OM9 A;  4Z05 A;  4Z06 A;  1BN8 A;  1JTA A;  2YUH A;  5AMV A;  4YEI A;  4XQF A;  1WMR A;  1K4Z A;  1IB4 A;  2O1D A;  2UVF A;  4YZ0 A;  1OFE A;  4AVZ A;  2O0W A;  1IDK A;  4XL9 A;  3WWG A;  2ODL A;  2EWE A;  2VNL A;  3PET A;  4YZA A;  4C2L A;  5C1C A;  1RMG A;  1TSP A;  1PXZ A;  1QQ1 A;  3H09 A;  2O04 A;  2UVE A;  1O8D A;  2VBK A;  1CZF A;  2BM7 A;  2NTP A;  3SYJ A;  2J8K A;  2O17 A;  3NAW A;  3GQ7 A;  5JLV C;  3TH0 A;  4XN0 A;  2NTQ A;  1O88 A;  2O6W A;  4OJO A;  2W7Z A;  3EQO A;  4XOT A;  3B8Y A;  1QA3 A;  1QA1 A;  2XTW A;  3ZPP A;  3BH7 B;  2F3L A;  3GRH A;  2XT4 A;  4YEL A;  4YDT A;  3ZSC A;  1KTW A;  3JUR A;  4I84 A;  2NSP A;  4U4B A;  1TYX A;  3UW0 A;  5C1E A;  4Z03 A;  2VFN A;  2VFM A;  3AK5 A;  4XOR A;  4XLC A;  1DBG A;  2VKY B;  2VJJ A;  2B0R A;  5DNS A;  3GQA A;  1QA2 A;  1EA0 A;  1RWR A;  5JMC B;  2X6Y A;  1O8K A;  4MXN A;  1K8F A;  4W8Q A;  4YZQ A;  1TYV A;  4XNF A;  1O8L A;  2VFP A;  4W8R A;  3T9G A;  2BX6 A;  2X3H A;  4YCQ A;  2NTB A;  2BM4 A;  1OFM A;  1O8I A;  1HF2 A;  1O8E A;  1CLW A;  3NB2 A;  4XMY A;  4OJP A;  1LKT A;  4V02 C;  1O8H A;  1RU4 A;  1O8M A;  3LMW A;  1X0C A;  2QY1 A;  4YC5 A;  4YZX A;  2NZM A;  4MR0 A;  2J8I A;  3RIQ A;  3SY2 A;  1XG2 A;  2INV A;  2VFQ A;  2QZA A;  2PYG A;  1QRB A;  1OFD A;  2XT2 A;  1LLW A;  2QXZ A;  4XKV A;  1JRG A;  3DU1 X;  3N90 A;  3N6Z A;  2NT6 A;  2VJI A;  4OPW A;  4W8S A;  2PEC A;  2INU A;  4NK8 A;  4XKW A;  4XR6 A;  4EW9 A;  3B90 A;  4OZZ A;  1TYW A;  1LLZ A;  3VSV A;  1O8J A;  3VMW A;  1O8F A;  4XLE A;  3SZE A;  3GQ8 A;  1K5C A;  3VST A;  2X6X A;  3SUC A;  2IOU G;  1QJV A;  4XOP A;  1L1I A;  2BSP A;  1EE6 A;  2PYH A;  1KCD A;  2O0V A;  4XN3 A;  1OGO X;  4OJ6 A;  4XM3 A;  3GQ9 A;  4XLH A;  3P4G A;  2BM6 A;  4YFO A;  3PSZ A;  4OJL A;  1LM1 A;  3PSS A;  2QX3 A;  3VSU A;  1IDJ A;  1O8G A;  1PLU A;  2V5I A;  2G0Y A;  3KRG A;  4HWV A;  4U49 A;  4YEJ A;  2XC1 A;  2NST A;  4W8T A;  4XON A;  1NHC A;  1AIR A;  2Z8G A;  1EZG A;  1BHE A;  3BH6 B;  2X85 A;  1WXR A;  1H80 A;  4PMH A;  4XLA A;  2VBM A;  1QRC A;  1KCC A;  1GQ8 A;  1QCX A;  1DBO A; 
#chains in the Genus database with same CATH homology
 1K8F A;  1TSP A;  1TYW A;  1TYV A;  1QQ1 A;  3JX8 A;  2VFP A;  2BM5 A;  3H09 A;  2BX6 A;  1DAB A;  3ML3 A;  4OJ5 A;  3SZE A;  2BM7 A;  2BM4 A;  1KQ5 A;  2IOU G;  3LYC A;  4JRA C;  1HF2 A;  3SYJ A;  1CLW A;  5JLV C;  3TH0 A;  4OJO A;  1TYU A;  4OJ6 A;  2W7Z A;  4OJP A;  1LKT A;  3LJY A;  4V02 C;  5JMC B;  2VFO A;  1QA3 A;  3P4G A;  1QA1 A;  2BM6 A;  3BH7 B;  4KH3 A;  2F3L A;  2J8I A;  4OJL A;  4OM9 A;  3RIQ A;  2V5I A;  2VFQ A;  2G0Y A;  2YUH A;  2XC1 A;  1QRB A;  1TYX A;  2VFN A;  2VFM A;  1K4Z A;  3BH6 B;  1WXR A;  3AK5 A;  2VKY B;  3N6Z A;  3N90 A;  1QRC A;  2B0R A;  4OPW A;  1QA2 A;  2VNL A;  3PET A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2XC1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations