The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
83
|
sequence length |
274
|
structure length |
274
|
Chain Sequence |
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Enterobacter aerogenes
|
| molecule keywords |
Phosphohydrolase
|
| total genus |
83
|
| structure length |
274
|
| sequence length |
274
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature |
ec
3.1.4.46: Glycerophosphodiester phosphodiesterase. |
| pdb deposition date | 2008-04-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00149 | Metallophos | Calcineurin-like phosphoesterase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | Transcription Regulator spoIIAA | ||
| Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase; chain A, domain 2 | Purple Acid Phosphatase; chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 3D03 A; 2ZO9 B; 2ZOA A; 2DXN A; 2DXL A; #chains in the Genus database with same CATH topology 5EQV A; 2CV9 A; 1OID A; 3H64 A; 1WAR A; 4Q7F A; 5JPF A; 1M63 A; 3QFN A; 3ZTV A; 1BUZ A; 1FC6 A; 3QFK A; 4ZX2 A; 2IE4 C; 2QFP A; 4AEJ A; 1VC1 A; 2ZO9 B; 4I5N C; 4JA9 A; 4MP0 A; 3ZXN A; 1N6D A; 1TID B; 3D3U A; 3FLO A; 4ORB A; 1H4Y A; 3GMF A; 1S3M A; 2O8A A; 3GVE A; 3V4Y A; 4IYP C; 5EUS A; 3IB7 A; 2YEQ A; 3OIR A; 3V8V A; 2WDF A; 1XZW A; 1JK7 A; 3MOG A; 4H2F A; 4I5L C; 4NZV A; 2NYL C; 4YKE A; 4XS5 A; 4LU9 A; 4JC0 A; 4TUI A; 1HF2 A; 4DMG A; 3IVE A; 3EGH A; 2KKN A; 4MOV A; 4O24 A; 3AGE A; 4B2O A; 4H2I A; 1FC9 A; 2KLN A; 3LLO A; 2CWW A; 3P71 C; 4UWQ A; 1T6R A; 2RRL A; 4DGF A; 3LDF A; 1KBP A; 3C0K A; 2DXL A; 3GVK A; 3JU4 A; 2WDC A; 3KBP A; 4M0V A; 3OIZ A; 3RL5 A; 1HPU A; 4O43 A; 5B8I A; 4FBK A; 5IOH A; 2R17 A; 4KKZ A; 2WDE A; 3DSC A; 3PSN A; 2Z06 A; 1U32 A; 2YVT A; 3QFM A; 3K7V C; 4F0Z A; 5F3W A; 5EUZ A; 4TUG A; 4HD0 A; 4V0X A; 3DJA A; 2Z1A A; 3MGL A; 2IAE C; 1J7X A; 1QFC A; 3F43 A; 1H4Z A; 2DXN A; 2OAS A; 2KA5 A; 1AUI A; 3H68 A; 3PSO A; 5C1V A; 1HP1 A; 3H69 A; 3DOR A; 1S8E A; 3FGA C; 3IVD A; 4FBQ A; 5EUU A; 2HYP A; 2AS0 A; 1SU1 A; 2IE3 C; 3AUZ A; 3IB8 A; 1TIL B; 3QG5 C; 3EGG A; 4J6O A; 2BDX A; 2JOG A; 3DSD A; 3GK7 A; 5EZB A; 1W24 A; 1K32 A; 2AHD A; 3T6O A; 2NYM C; 3THO B; 3H61 A; 1SBO A; 4ORC A; 3GVJ A; 4HIZ A; 3HVQ A; 4LTY A; 1V73 A; 2Z72 A; 4UT3 B; 3E7A A; 1V0F A; 4DHL A; 5JPE A; 1UF3 A; 2O8G A; 3AV0 A; 3JYF A; 1NNW A; 2HY1 A; 3LL8 A; 1N6F A; 1S3L A; 3D03 A; 1QHW A; 3ZTB A; 1TCO A; 3TGH A; 1S95 A; 3NY7 A; 3IH8 A; 1WXW A; 3IF5 A; 3IHA A; 5EUW A; 3C5W C; 3N5U A; 1T71 A; 1USH A; 3T1I A; 4H2B A; 4H1S A; 1OIE A; 2A22 A; 2ZOA A; 3DUP A; 4QTP A; 2GJU A; 3ICF A; 3IH9 A; 4FCX A; 3AGD A; 3DW8 C; 4UT3 A; 3H66 A; 5GTU A; 3K7W C; 1S70 A; 1T70 A; 4FBW A; 3RL3 A; 2WDD A; 5J28 A; 4AE2 A; 2NPP C; 2QFR A; 3H60 A; 3H62 B; 4XPN A; 4DT2 A; 3GHF A; 3QFO A; 1FC7 A; 2BCD A; 3V97 A; 1FJM A; 3K50 A; 2DFJ A; 2NXF A; 4KBP A; 4O4K A; 4IL1 A; 4GHN A; 4WWL A; 1MF8 A; 4JA7 A; 1OI8 A; 1N6E A; 3EH7 A; 1S3N A; 1UTE A; 5EUX A; 1HO5 A; 5INB A; 3THN A; 2BQ8 X; 3ZU0 A; 5HPE A; 1Z2X A; 3CK2 A; 1WAO 1; 4H2G A; 4V0W A; 3E0J A; 3GVL A; 1V0E A; 4DSY A; 2Q8U A; 1BPL A; 4ZVZ A; 4O5G A; 2QJC A; 3E7B A; 2ZBM A; 4UT2 A; 1IT6 A; 2B78 A; 2USH A; 3LKL A; 2HYO A; 5JJT A; 4L8K A; 3C9F A; 4OR9 A; 4MOY A; 4ORA A; 3RL4 A; 4L1C A; 2XMO A; 4DGH A; 1FCF A; 1AUZ A; 3H63 A; 1XM7 A; 4V0V A; 1H4X A; 1THN B; 3RQZ A; 3H67 A; 2P6B A; 4G9J A; 1G5B A; 5DNY A; 1TH8 B; 3QDQ A; 1II7 A; 4HYL A; 3IHB A; 2VY9 A; 3VSE A; 1Z2W A; 4H1Y P; 1WXX A; 4LAC C; #chains in the Genus database with same CATH homology 5EQV A; 2CV9 A; 1OID A; 3H64 A; 1WAR A; 4Q7F A; 5JPF A; 1M63 A; 3QFN A; 3ZTV A; 1FC6 A; 3QFK A; 4ZX2 A; 2IE4 C; 2QFP A; 2ZO9 B; 4I5N C; 4JA9 A; 4MP0 A; 1N6D A; 3FLO A; 4ORB A; 3GMF A; 1S3M A; 2O8A A; 3GVE A; 3V4Y A; 4IYP C; 3IB7 A; 2YEQ A; 2WDF A; 1XZW A; 1JK7 A; 3MOG A; 4H2F A; 4I5L C; 4NZV A; 2NYL C; 4YKE A; 4LU9 A; 4JC0 A; 4TUI A; 3IVE A; 3EGH A; 2KKN A; 4MOV A; 4O24 A; 4B2O A; 4H2I A; 1FC9 A; 3P71 C; 4UWQ A; 2RRL A; 1KBP A; 4HD0 A; 3KBP A; 3RL5 A; 2DXL A; 2WDC A; 4M0V A; 5B8I A; 1HPU A; 4O43 A; 5IOH A; 4FBK A; 2R17 A; 4KKZ A; 2WDE A; 3DSC A; 3PSN A; 2Z06 A; 1U32 A; 2YVT A; 3QFM A; 3K7V C; 4F0Z A; 5F3W A; 4TUG A; 4V0X A; 3DJA A; 2Z1A A; 2IAE C; 1J7X A; 1QFC A; 2DXN A; 3H68 A; 1AUI A; 3PSO A; 5C1V A; 1HP1 A; 3H69 A; 3DOR A; 1S8E A; 3FGA C; 3IVD A; 4FBQ A; 2HYP A; 3AUZ A; 1SU1 A; 2IE3 C; 3IB8 A; 3QG5 C; 4J6O A; 3EGG A; 2BDX A; 2JOG A; 3DSD A; 1W24 A; 1K32 A; 2AHD A; 2NYM C; 3THO B; 3H61 A; 4ORC A; 3HVQ A; 4LTY A; 1V73 A; 2Z72 A; 4UT3 B; 3E7A A; 5JPE A; 4DHL A; 1UF3 A; 2O8G A; 3AV0 A; 3JYF A; 1NNW A; 2HY1 A; 3LL8 A; 1N6F A; 1S3L A; 3D03 A; 1QHW A; 1TCO A; 3TGH A; 1S95 A; 3N5U A; 3C5W C; 1T71 A; 1USH A; 3T1I A; 4H2B A; 4H1S A; 1OIE A; 2A22 A; 2ZOA A; 2GJU A; 3DUP A; 3ICF A; 4FCX A; 3DW8 C; 4UT3 A; 3H66 A; 5GTU A; 3K7W C; 1S70 A; 1T70 A; 4FBW A; 3RL3 A; 2WDD A; 5J28 A; 4AE2 A; 2NPP C; 2QFR A; 3H60 A; 3H62 B; 4XPN A; 4DT2 A; 3GHF A; 3QFO A; 1FC7 A; 2BCD A; 1FJM A; 2DFJ A; 3K50 A; 2NXF A; 4KBP A; 4O4K A; 4IL1 A; 4GHN A; 4WWL A; 1MF8 A; 4JA7 A; 1OI8 A; 1N6E A; 1S3N A; 1UTE A; 1HO5 A; 5INB A; 3THN A; 2BQ8 X; 3ZU0 A; 5HPE A; 1Z2X A; 3CK2 A; 1WAO 1; 4H2G A; 4V0W A; 3E0J A; 4DSY A; 2Q8U A; 1BPL A; 4ZVZ A; 4O5G A; 2QJC A; 3E7B A; 2ZBM A; 4UT2 A; 1IT6 A; 2USH A; 2HYO A; 5JJT A; 4L8K A; 3C9F A; 4OR9 A; 4MOY A; 4ORA A; 3RL4 A; 4L1C A; 2XMO A; 1FCF A; 3H63 A; 1XM7 A; 4V0V A; 3RQZ A; 3H67 A; 2P6B A; 4G9J A; 1G5B A; 5DNY A; 1II7 A; 1Z2W A; 4H1Y P; 4AEJ A; 4LAC C;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
