1CT2I

Crystal structure of the omtky3 p1 variant omtky3-thr18i in complex with sgpb
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTTEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Deleterious effects of beta-branched residues in the S1 specificity pocket of Streptomyces griseus proteinase B (SGPB): crystal structures of the turkey ovomucoid third domain variants Ile18I, Val18I, Thr18I, and Ser18I in complex with SGPB.
pubmed rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Meleagris gallopavo
molecule keywords PROTEINASE B
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1ct2I00
2GKRI 2B0UC 2GKVA 2NU3I 2SGQI 1NUBA 2OVOA 2M5XA 2SGFI 1DS3I 2N52A 2ERWA 2JXDA 1UUCA 5DAEA 1CSOI 1R0RI 2SGDI 1MT1A 1HPTA 3SEKC 2NU4I 1TIHA 2F3CI 1YTPA 2N71A 5JHWC 1N13A 4GI3C 2NU0I 1PPFI 2XRCA 1SGYI 2WCYA 1LR9A 1Y1CA 1Y1BA 1CE3A 4OVOA 1M8CA 1LR8A 1PCEA 1IW4A 3SGBI 1LR7A 1PJUA 2QQCA 3QTLD 2KMQA 2NU2I 1SGDI 1BMOA 1TURA 1KMAA 2V53A 1SGNI 2QQDA 1CT4I 2SGEI 1M8BA 2LEOA 2ARPF 1IY6A 1Z7KB 2KMOA 1SGQI 1OVOA 1OMTA 1SGRI 3B4VC 1TBQR 1TGSI 1CGII 2P6AC 1HJAI 2SGPI 1OMUA 1YU6C 3HH2C 2KMRA 1CHOI 1FYBA 1SGEI 4SGBI 2KCXA 2JYYA 1UVFA 2NU1I 1HDLA 3SGQI 1SGPI 1OYVI 2BUSA 3TJQA 2N17A 1TBRR 2JZMA 1CT0I 3OVOA 1IY5A 1TUSA 1H0ZA 1CGJI 1BUSA 1CT2I 2GKTI 4HGUA 2KMPA 1DS2I 1AN1I 1UVGA
chains in the Genus database with same CATH superfamily
4WP4A 3UEYA 2GKRI 1ULKA 2B0UC 2GKVA 2W0TA 3VDUA 2NU3I 1P9ZA 4FKDA 2SGQI 1NUBA 2DB6A 2M5XA 2OVOA 2SGFI 5E3PA 1DS3I 3TO6A 2N52A 3TO9A 2ERWA 2JXDA 1UUCA 5DAEA 2J87A 2CWFA 2ROWA 1CSOI 1R0RI 1PTRA 1S20A 2RIJA 2WVJA 3TOAA 4E1RA 2SGDI 1KBEA 2ELIA 1ULNA 2GVIA 3PDNA 1TBOA 2E5RA 2CJSC 2X52A 2OU2A 3R5CA 2ORVA 2X3TA 1FAQA 1MT1A 1HPTA 4A24A 3SEKC 2B8TA 1WTJA 1ULMA 1P9GA 1PTQA 2DKVA 2QPOA 2NU4I 1K7TA 1TIHA 2F3CI 5E3QA 3KY9A 5HQ8A 1FY7A 1YTPA 2J9RA 2N71A 5JHWC 2ENZA 5FUWA 2ORWA 2V1CC 1K7UA 1N13A 4GI3C 3QWPA 2NU0I 2OD1A 1PPFI 2XRCA 1SGYI 3E2IA 2WCYA 3R5AA 1LR9A 1Y1CA 1X74A 4UXHA 1Y1BA 1V1HA 1CE3A 2JA1A 4OVOA 1LR8A 1M8CA 1PCEA 1IW4A 5FUVA 7WGAA 3TO7A 3SGBI 3MEKA 2K9HA 2GIVA 3UEJA 1U5KA 1V1IA 1W3SA 1LR7A 1PJUA 1XA6A 2JW6A 2LUYA 2QQCA 4DNCA 1R79A 5J8FA 3QTLD 2KMQA 2Y0MA 2NU2I 1SGDI 1BMOA 1NXUA 2PQ8A 1TURA 2CWGA 2L7XA 2QQ0A 3FC3A 2E73A 3R5DA 2V53A 1KMAA 1SGNI 5CCMA 3FSYA 2QQDA 4JCVE 5J8CA 1CT4I 2SGEI 1M8BA 3UGIA 1TOTA 1X4SA 2LEOA 1WKXA 3UFFA 2ARPF 1IY6A 1Z7KB 2KMOA 1MJAA 1SGQI 1OVOA 3CXLA 1OMTA 3D00A 1SGRI 5E3RA 3B4VC 1TBQR 1RFHA 1TGSI 1CGII 2P6AC 2DIPA 2N1AB 1W4RA 5EX3A 1HJAI 1VDDA 2SGPI 4B6DA 1OMUA 2FNFX 2V1CA 1YU6C 3HH2C 1MJBA 1Q9BA 2KMRA 2RC4A 1CHOI 1Y8FA 1FYBA 1TBNA 1FARA 1Z2IA 1SGEI 2UVOA 3OXLA 4UXJA 5FUYA 4SGBI 1K7VA 3QAHA 3UOEA 2JYYA 2KCXA 1UVFA 1XBTA 2NU1I 5HI7A 3FSXA 3TOBA 2L8EA 9WGAA 1HDLA 1KBFA 1WGCA 3E59A 3BJIA 3UGLA 4L9MA 4E1PA 2ODDA 3SGQI 1SGPI 2ENNA 2LB7A 1OYVI 3R5BA 2A20A 2BUSA 3TJQA 2N17A 1TBRR 2JZMA 1CT0I 3OVOA 1IY5A 1MJ9A 1TUSA 2YUUA 1UHAA 4AMLA 2WGCA 3VE5A 2YQPA 1H0ZA 3OXFA 1CGJI 1XX6A 3OL0A 1BUSA 1CT2I 5EX0A 5FUXA 3GOXA 2GKTI 2UZ3A 4HGUA 2OZUA 3RU0A 3UGDA 4UXIA 2VRWB 4MPIA 2KMPA 2CWHA 1HEVA 1DS2I 3VDPA 2QQEA 5CCLA 1AN1I 3OXGA 1WGTA 1UVGA
chains in the Genus database with same CATH topology
3UEYA 2GKRI 2B0UC 2GKVA 2W0TA 3VDUA 2NU3I 4FKDA 2SGQI 1NUBA 2DB6A 2M5XA 2OVOA 2SGFI 1DS3I 2N52A 2ERWA 2JXDA 1UUCA 5DAEA 2J87A 2ROWA 1CSOI 1R0RI 1PTRA 2WVJA 4E1RA 2SGDI 1KBEA 2ELIA 2GVIA 3PDNA 1TBOA 2E5RA 2CJSC 1FAQA 2ORVA 1MT1A 1HPTA 4A24A 3SEKC 2B8TA 2QPOA 2NU4I 1TIHA 2F3CI 3KY9A 5HQ8A 1YTPA 2J9RA 2N71A 5JHWC 2ENZA 5FUWA 2ORWA 2V1CC 1N13A 4GI3C 3QWPA 2NU0I 2OD1A 1PPFI 2XRCA 1SGYI 3E2IA 2WCYA 1LR9A 1Y1CA 1X74A 4UXHA 1Y1BA 1V1HA 1CE3A 2JA1A 4OVOA 1M8CA 1LR8A 1PCEA 1IW4A 5FUVA 3SGBI 3MEKA 2K9HA 3UEJA 1U5KA 1V1IA 1W3SA 1LR7A 1PJUA 1XA6A 2JW6A 2LUYA 2QQCA 1R79A 3QTLD 2KMQA 2NU2I 1SGDI 1BMOA 1TURA 2L7XA 3FC3A 2QQ0A 2E73A 1KMAA 2V53A 1SGNI 2QQDA 4JCVE 1CT4I 1AN1I 2SGEI 1M8BA 3UGIA 1TOTA 1X4SA 2LEOA 3UFFA 2ARPF 1IY6A 1Z7KB 2KMOA 1SGQI 1OVOA 3CXLA 1OMTA 3D00A 1SGRI 3B4VC 1TBQR 1RFHA 1TGSI 1CGII 2P6AC 2DIPA 2N1AB 1W4RA 5EX3A 1HJAI 1VDDA 2SGPI 4B6DA 1OMUA 2FNFX 2V1CA 1YU6C 3HH2C 2KMRA 1CHOI 1Y8FA 1FYBA 1TBNA 1FARA 5CCMA 1SGEI 3OXLA 4UXJA 5FUYA 4SGBI 2JYYA 2KCXA 1UVFA 1XBTA 2NU1I 5HI7A 1HDLA 1KBFA 2L8EA 3E59A 3BJIA 3UGLA 4L9MA 4E1PA 2ODDA 3SGQI 1SGPI 2ENNA 1OYVI 2A20A 2BUSA 3TJQA 2N17A 1TBRR 2JZMA 1CT0I 3OVOA 1IY5A 1TUSA 2YUUA 3VE5A 2YQPA 1H0ZA 3OXFA 1CGJI 1XX6A 3OL0A 1BUSA 1CT2I 5EX0A 5FUXA 3GOXA 2GKTI 2UZ3A 4HGUA 3RU0A 3UGDA 4UXIA 2VRWB 2KMPA 1DS2I 3VDPA 2QQEA 5CCLA 1PTQA 3OXGA 1UVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GKR I;  2B0U C;  2GKV A;  2NU3 I;  2SGQ I;  1NUB A;  2OVO A;  2M5X A;  2SGF I;  1DS3 I;  2N52 A;  2ERW A;  2JXD A;  1UUC A;  5DAE A;  1CSO I;  1R0R I;  2SGD I;  1MT1 A;  1HPT A;  3SEK C;  2NU4 I;  1TIH A;  2F3C I;  1YTP A;  2N71 A;  5JHW C;  1N13 A;  4GI3 C;  2NU0 I;  1PPF I;  2XRC A;  1SGY I;  2WCY A;  1LR9 A;  1Y1C A;  1Y1B A;  1CE3 A;  4OVO A;  1M8C A;  1LR8 A;  1PCE A;  1IW4 A;  3SGB I;  1LR7 A;  1PJU A;  2QQC A;  3QTL D;  2KMQ A;  2NU2 I;  1SGD I;  1BMO A;  1TUR A;  1KMA A;  2V53 A;  1SGN I;  2QQD A;  1CT4 I;  2SGE I;  1M8B A;  2LEO A;  2ARP F;  1IY6 A;  1Z7K B;  2KMO A;  1SGQ I;  1OVO A;  1OMT A;  1SGR I;  3B4V C;  1TBQ R;  1TGS I;  1CGI I;  2P6A C;  1HJA I;  2SGP I;  1OMU A;  1YU6 C;  3HH2 C;  2KMR A;  1CHO I;  1FYB A;  1SGE I;  4SGB I;  2KCX A;  2JYY A;  1UVF A;  2NU1 I;  1HDL A;  3SGQ I;  1SGP I;  1OYV I;  2BUS A;  3TJQ A;  2N17 A;  1TBR R;  2JZM A;  1CT0 I;  3OVO A;  1IY5 A;  1TUS A;  1H0Z A;  1CGJ I;  1BUS A;  1CT2 I;  2GKT I;  4HGU A;  2KMP A;  1DS2 I;  1AN1 I;  1UVG A; 
#chains in the Genus database with same CATH topology
 4WP4 A;  3UEY A;  2GKR I;  1ULK A;  2B0U C;  2GKV A;  2W0T A;  3VDU A;  2NU3 I;  1P9Z A;  4FKD A;  2SGQ I;  1NUB A;  2DB6 A;  2M5X A;  2OVO A;  2SGF I;  5E3P A;  1DS3 I;  3TO6 A;  2N52 A;  3TO9 A;  2ERW A;  2JXD A;  1UUC A;  5DAE A;  2J87 A;  2CWF A;  2ROW A;  1CSO I;  1R0R I;  1PTR A;  1S20 A;  2RIJ A;  2WVJ A;  3TOA A;  4E1R A;  2SGD I;  1KBE A;  2ELI A;  1ULN A;  2GVI A;  3PDN A;  1TBO A;  2E5R A;  2CJS C;  2X52 A;  2OU2 A;  3R5C A;  2ORV A;  2X3T A;  1FAQ A;  1MT1 A;  1HPT A;  4A24 A;  3SEK C;  2B8T A;  1WTJ A;  1ULM A;  1P9G A;  1PTQ A;  2DKV A;  2QPO A;  2NU4 I;  1K7T A;  1TIH A;  2F3C I;  5E3Q A;  3KY9 A;  5HQ8 A;  1FY7 A;  1YTP A;  2J9R A;  2N71 A;  5JHW C;  2ENZ A;  5FUW A;  2ORW A;  2V1C C;  1K7U A;  1N13 A;  4GI3 C;  3QWP A;  2NU0 I;  2OD1 A;  1PPF I;  2XRC A;  1SGY I;  3E2I A;  2WCY A;  3R5A A;  1LR9 A;  1Y1C A;  1X74 A;  4UXH A;  1Y1B A;  1V1H A;  1CE3 A;  2JA1 A;  4OVO A;  1LR8 A;  1M8C A;  1PCE A;  1IW4 A;  5FUV A;  7WGA A;  3TO7 A;  3SGB I;  3MEK A;  2K9H A;  2GIV A;  3UEJ A;  1U5K A;  1V1I A;  1W3S A;  1LR7 A;  1PJU A;  1XA6 A;  2JW6 A;  2LUY A;  2QQC A;  4DNC A;  1R79 A;  5J8F A;  3QTL D;  2KMQ A;  2Y0M A;  2NU2 I;  1SGD I;  1BMO A;  1NXU A;  2PQ8 A;  1TUR A;  2CWG A;  2L7X A;  2QQ0 A;  3FC3 A;  2E73 A;  3R5D A;  2V53 A;  1KMA A;  1SGN I;  5CCM A;  3FSY A;  2QQD A;  4JCV E;  5J8C A;  1CT4 I;  2SGE I;  1M8B A;  3UGI A;  1TOT A;  1X4S A;  2LEO A;  1WKX A;  3UFF A;  2ARP F;  1IY6 A;  1Z7K B;  2KMO A;  1MJA A;  1SGQ I;  1OVO A;  3CXL A;  1OMT A;  3D00 A;  1SGR I;  5E3R A;  3B4V C;  1TBQ R;  1RFH A;  1TGS I;  1CGI I;  2P6A C;  2DIP A;  2N1A B;  1W4R A;  5EX3 A;  1HJA I;  1VDD A;  2SGP I;  4B6D A;  1OMU A;  2FNF X;  2V1C A;  1YU6 C;  3HH2 C;  1MJB A;  1Q9B A;  2KMR A;  2RC4 A;  1CHO I;  1Y8F A;  1FYB A;  1TBN A;  1FAR A;  1Z2I A;  1SGE I;  2UVO A;  3OXL A;  4UXJ A;  5FUY A;  4SGB I;  1K7V A;  3QAH A;  3UOE A;  2JYY A;  2KCX A;  1UVF A;  1XBT A;  2NU1 I;  5HI7 A;  3FSX A;  3TOB A;  2L8E A;  9WGA A;  1HDL A;  1KBF A;  1WGC A;  3E59 A;  3BJI A;  3UGL A;  4L9M A;  4E1P A;  2ODD A;  3SGQ I;  1SGP I;  2ENN A;  2LB7 A;  1OYV I;  3R5B A;  2A20 A;  2BUS A;  3TJQ A;  2N17 A;  1TBR R;  2JZM A;  1CT0 I;  3OVO A;  1IY5 A;  1MJ9 A;  1TUS A;  2YUU A;  1UHA A;  4AML A;  2WGC A;  3VE5 A;  2YQP A;  1H0Z A;  3OXF A;  1CGJ I;  1XX6 A;  3OL0 A;  1BUS A;  1CT2 I;  5EX0 A;  5FUX A;  3GOX A;  2GKT I;  2UZ3 A;  4HGU A;  2OZU A;  3RU0 A;  3UGD A;  4UXI A;  2VRW B;  4MPI A;  2KMP A;  2CWH A;  1HEV A;  1DS2 I;  3VDP A;  2QQE A;  5CCL A;  1AN1 I;  3OXG A;  1WGT A;  1UVG A; 
#chains in the Genus database with same CATH homology
 3UEY A;  2GKR I;  2B0U C;  2GKV A;  2W0T A;  3VDU A;  2NU3 I;  4FKD A;  2SGQ I;  1NUB A;  2DB6 A;  2M5X A;  2OVO A;  2SGF I;  1DS3 I;  2N52 A;  2ERW A;  2JXD A;  1UUC A;  5DAE A;  2J87 A;  2ROW A;  1CSO I;  1R0R I;  1PTR A;  2WVJ A;  4E1R A;  2SGD I;  1KBE A;  2ELI A;  2GVI A;  3PDN A;  1TBO A;  2E5R A;  2CJS C;  1FAQ A;  2ORV A;  1MT1 A;  1HPT A;  4A24 A;  3SEK C;  2B8T A;  2QPO A;  2NU4 I;  1TIH A;  2F3C I;  3KY9 A;  5HQ8 A;  1YTP A;  2J9R A;  2N71 A;  5JHW C;  2ENZ A;  5FUW A;  2ORW A;  2V1C C;  1N13 A;  4GI3 C;  3QWP A;  2NU0 I;  2OD1 A;  1PPF I;  2XRC A;  1SGY I;  3E2I A;  2WCY A;  1LR9 A;  1Y1C A;  1X74 A;  4UXH A;  1Y1B A;  1V1H A;  1CE3 A;  2JA1 A;  4OVO A;  1M8C A;  1LR8 A;  1PCE A;  1IW4 A;  5FUV A;  3SGB I;  3MEK A;  2K9H A;  3UEJ A;  1U5K A;  1V1I A;  1W3S A;  1LR7 A;  1PJU A;  1XA6 A;  2JW6 A;  2LUY A;  2QQC A;  1R79 A;  3QTL D;  2KMQ A;  2NU2 I;  1SGD I;  1BMO A;  1TUR A;  2L7X A;  3FC3 A;  2QQ0 A;  2E73 A;  1KMA A;  2V53 A;  1SGN I;  2QQD A;  4JCV E;  1CT4 I;  1AN1 I;  2SGE I;  1M8B A;  3UGI A;  1TOT A;  1X4S A;  2LEO A;  3UFF A;  2ARP F;  1IY6 A;  1Z7K B;  2KMO A;  1SGQ I;  1OVO A;  3CXL A;  1OMT A;  3D00 A;  1SGR I;  3B4V C;  1TBQ R;  1RFH A;  1TGS I;  1CGI I;  2P6A C;  2DIP A;  2N1A B;  1W4R A;  5EX3 A;  1HJA I;  1VDD A;  2SGP I;  4B6D A;  1OMU A;  2FNF X;  2V1C A;  1YU6 C;  3HH2 C;  2KMR A;  1CHO I;  1Y8F A;  1FYB A;  1TBN A;  1FAR A;  5CCM A;  1SGE I;  3OXL A;  4UXJ A;  5FUY A;  4SGB I;  2JYY A;  2KCX A;  1UVF A;  1XBT A;  2NU1 I;  5HI7 A;  1HDL A;  1KBF A;  2L8E A;  3E59 A;  3BJI A;  3UGL A;  4L9M A;  4E1P A;  2ODD A;  3SGQ I;  1SGP I;  2ENN A;  1OYV I;  2A20 A;  2BUS A;  3TJQ A;  2N17 A;  1TBR R;  2JZM A;  1CT0 I;  3OVO A;  1IY5 A;  1TUS A;  2YUU A;  3VE5 A;  2YQP A;  1H0Z A;  3OXF A;  1CGJ I;  1XX6 A;  3OL0 A;  1BUS A;  1CT2 I;  5EX0 A;  5FUX A;  3GOX A;  2GKT I;  2UZ3 A;  4HGU A;  3RU0 A;  3UGD A;  4UXI A;  2VRW B;  2KMP A;  1DS2 I;  3VDP A;  2QQE A;  5CCL A;  1PTQ A;  3OXG A;  1UVG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...