1K7UA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,4glcnac complex
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords agglutinin isolectin 3
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
molecule tags Sugar binding protein
total genus 45
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA04
2CWGA 1K7VA 4AMLA 1K7TA 1Q9BA 1ULNA 1P9ZA 2DKVA 2WGCA 1WGCA 1WKXA 1WGTA 2LB7A 1P9GA 7WGAA 4MPIA 2X3TA 9WGAA 1ULKA 2UVOA 1HEVA 1ULMA 2X52A 4WP4A 1UHAA 1K7UA
chains in the Genus database with same CATH superfamily
2KMPA 3QAHA 1XBTA 3R5BA 3OVOA 1HPTA 5E3PA 4AMLA 1CT2I 2ERWA 1HDLA 1XA6A 1Z2IA 1TOTA 1CSOI 2DB6A 4HGUA 3B4VC 2F3CI 1P9ZA 2GKTI 2OU2A 4UXJA 3HH2C 1OMTA 2DIPA 5CCLA 5JHWC 2CWFA 1WGCA 2A20A 2ROWA 4OVOA 1SGYI 1IY6A 2KMOA 1NUBA 1YU6C 4JCVE 2KCXA 3TO7A 2WCYA 5CCMA 7WGAA 2J87A 1TBOA 1SGPI 1MJ9A 1CT0I 5FUXA 1DS3I 3PDNA 2L7XA 1HEVA 2E5RA 4GI3C 2K9HA 1M8CA 1BMOA 2GVIA 1W4RA 1ULMA 1XX6A 1S20A 2W0TA 2N71A 2ARPF 4WP4A 1MJBA 1UVGA 2P6AC 2QPOA 1KMAA 1Y1CA 2J9RA 3VE5A 2BUSA 1TBQR 4L9MA 5E3RA 2VRWB 1SGDI 5HQ8A 2NU4I 1N13A 2JXDA 1OVOA 1Q9BA 2ENNA 1FY7A 3RU0A 3TOBA 1YTPA 3QTLD 1PTRA 1UUCA 3E2IA 3SGQI 2DKVA 4FKDA 2ORWA 3UGIA 1PTQA 2LUYA 2Y0MA 3GOXA 1RFHA 3QWPA 1FYBA 2LB7A 1LR8A 2ELIA 2E73A 2FNFX 2ORVA 1FARA 1M8BA 3R5AA 4MPIA 9WGAA 4E1PA 2YQPA 3OXLA 1X4SA 3FSXA 3UOEA 1CGJI 1OMUA 3BJIA 2QQCA 1Y1BA 2YUUA 2V53A 4SGBI 3VDUA 2ENZA 1H0ZA 1SGQI 1MJAA 2N52A 2NU1I 3CXLA 4UXIA 1Z7KB 2V1CA 1K7UA 3UGDA 1LR7A 1V1HA 2GIVA 2PQ8A 1PCEA 2WVJA 3R5DA 3TO6A 1W3SA 2CWGA 1HJAI 1K7VA 1TGSI 4B6DA 2OVOA 1TBRR 1K7TA 2JYYA 1ULNA 2B0UC 2JA1A 1Y8FA 1V1IA 2CJSC 2OD1A 3D00A 1CHOI 2SGQI 1SGEI 3KY9A 1VDDA 3UFFA 2GKRI 1TBNA 2UZ3A 2WGCA 1KBEA 2JZMA 5FUYA 1WKXA 4UXHA 1AN1I 1WGTA 1NXUA 1P9GA 1CT4I 2SGEI 1ULKA 5FUWA 1CGII 2L8EA 1SGNI 2OZUA 2NU2I 2JW6A 3UGLA 4DNCA 2QQDA 3SGBI 3FSYA 3FC3A 1IY5A 1DS2I 1PJUA 1R0RI 5HI7A 3TJQA 3UEJA 1UHAA 2GKVA 1U5KA 2QQEA 1KBFA 3SEKC 5EX3A 3TO9A 5J8CA 2KMRA 2N1AB 1BUSA 2N17A 2XRCA 1PPFI 1R79A 3MEKA 3E59A 4E1RA 2SGPI 1WTJA 2NU3I 3VDPA 4A24A 1TIHA 1LR9A 1IW4A 1CE3A 2SGFI 1MT1A 5DAEA 3OXFA 1X74A 2X3TA 3R5CA 5FUVA 2LEOA 2UVOA 5J8FA 1TUSA 2SGDI 1TURA 1OYVI 2ODDA 2QQ0A 1FAQA 1SGRI 2CWHA 2X52A 3OXGA 2RC4A 3TOAA 3UEYA 3OL0A 2M5XA 2NU0I 5E3QA 1UVFA 2B8TA 5EX0A 2KMQA 2RIJA 2V1CC
chains in the Genus database with same CATH topology
2CWGA 1K7VA 4AMLA 1K7TA 1Q9BA 1ULNA 1P9ZA 2DKVA 2WGCA 1WGCA 1WKXA 1WGTA 2LB7A 1P9GA 7WGAA 4MPIA 2X3TA 9WGAA 1ULKA 2UVOA 1HEVA 1ULMA 2X52A 4WP4A 1UHAA 1K7UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CWG A;  1K7V A;  4AML A;  1K7T A;  1Q9B A;  1ULN A;  1P9Z A;  2DKV A;  2WGC A;  1WGC A;  1WKX A;  1WGT A;  2LB7 A;  1P9G A;  7WGA A;  4MPI A;  2X3T A;  9WGA A;  1ULK A;  2UVO A;  1HEV A;  1ULM A;  2X52 A;  4WP4 A;  1UHA A;  1K7U A; 
#chains in the Genus database with same CATH topology
 2KMP A;  3QAH A;  1XBT A;  3R5B A;  3OVO A;  1HPT A;  5E3P A;  4AML A;  1CT2 I;  2ERW A;  1HDL A;  1XA6 A;  1Z2I A;  1TOT A;  1CSO I;  2DB6 A;  4HGU A;  3B4V C;  2F3C I;  1P9Z A;  2GKT I;  2OU2 A;  4UXJ A;  3HH2 C;  1OMT A;  2DIP A;  5CCL A;  5JHW C;  2CWF A;  1WGC A;  2A20 A;  2ROW A;  4OVO A;  1SGY I;  1IY6 A;  2KMO A;  1NUB A;  1YU6 C;  4JCV E;  2KCX A;  3TO7 A;  2WCY A;  5CCM A;  7WGA A;  2J87 A;  1TBO A;  1SGP I;  1MJ9 A;  1CT0 I;  5FUX A;  1DS3 I;  3PDN A;  2L7X A;  1HEV A;  2E5R A;  4GI3 C;  2K9H A;  1M8C A;  1BMO A;  2GVI A;  1W4R A;  1ULM A;  1XX6 A;  1S20 A;  2W0T A;  2N71 A;  2ARP F;  4WP4 A;  1MJB A;  1UVG A;  2P6A C;  2QPO A;  1KMA A;  1Y1C A;  2J9R A;  3VE5 A;  2BUS A;  1TBQ R;  4L9M A;  5E3R A;  2VRW B;  1SGD I;  5HQ8 A;  2NU4 I;  1N13 A;  2JXD A;  1OVO A;  1Q9B A;  2ENN A;  1FY7 A;  3RU0 A;  3TOB A;  1YTP A;  3QTL D;  1PTR A;  1UUC A;  3E2I A;  3SGQ I;  2DKV A;  4FKD A;  2ORW A;  3UGI A;  1PTQ A;  2LUY A;  2Y0M A;  3GOX A;  1RFH A;  3QWP A;  1FYB A;  2LB7 A;  1LR8 A;  2ELI A;  2E73 A;  2FNF X;  2ORV A;  1FAR A;  1M8B A;  3R5A A;  4MPI A;  9WGA A;  4E1P A;  2YQP A;  3OXL A;  1X4S A;  3FSX A;  3UOE A;  1CGJ I;  1OMU A;  3BJI A;  2QQC A;  1Y1B A;  2YUU A;  2V53 A;  4SGB I;  3VDU A;  2ENZ A;  1H0Z A;  1SGQ I;  1MJA A;  2N52 A;  2NU1 I;  3CXL A;  4UXI A;  1Z7K B;  2V1C A;  1K7U A;  3UGD A;  1LR7 A;  1V1H A;  2GIV A;  2PQ8 A;  1PCE A;  2WVJ A;  3R5D A;  3TO6 A;  1W3S A;  2CWG A;  1HJA I;  1K7V A;  1TGS I;  4B6D A;  2OVO A;  1TBR R;  1K7T A;  2JYY A;  1ULN A;  2B0U C;  2JA1 A;  1Y8F A;  1V1I A;  2CJS C;  2OD1 A;  3D00 A;  1CHO I;  2SGQ I;  1SGE I;  3KY9 A;  1VDD A;  3UFF A;  2GKR I;  1TBN A;  2UZ3 A;  2WGC A;  1KBE A;  2JZM A;  5FUY A;  1WKX A;  4UXH A;  1AN1 I;  1WGT A;  1NXU A;  1P9G A;  1CT4 I;  2SGE I;  1ULK A;  5FUW A;  1CGI I;  2L8E A;  1SGN I;  2OZU A;  2NU2 I;  2JW6 A;  3UGL A;  4DNC A;  2QQD A;  3SGB I;  3FSY A;  3FC3 A;  1IY5 A;  1DS2 I;  1PJU A;  1R0R I;  5HI7 A;  3TJQ A;  3UEJ A;  1UHA A;  2GKV A;  1U5K A;  2QQE A;  1KBF A;  3SEK C;  5EX3 A;  3TO9 A;  5J8C A;  2KMR A;  2N1A B;  1BUS A;  2N17 A;  2XRC A;  1PPF I;  1R79 A;  3MEK A;  3E59 A;  4E1R A;  2SGP I;  1WTJ A;  2NU3 I;  3VDP A;  4A24 A;  1TIH A;  1LR9 A;  1IW4 A;  1CE3 A;  2SGF I;  1MT1 A;  5DAE A;  3OXF A;  1X74 A;  2X3T A;  3R5C A;  5FUV A;  2LEO A;  2UVO A;  5J8F A;  1TUS A;  2SGD I;  1TUR A;  1OYV I;  2ODD A;  2QQ0 A;  1FAQ A;  1SGR I;  2CWH A;  2X52 A;  3OXG A;  2RC4 A;  3TOA A;  3UEY A;  3OL0 A;  2M5X A;  2NU0 I;  5E3Q A;  1UVF A;  2B8T A;  5EX0 A;  2KMQ A;  2RIJ A;  2V1C C; 
#chains in the Genus database with same CATH homology
 2CWG A;  1K7V A;  4AML A;  1K7T A;  1Q9B A;  1ULN A;  1P9Z A;  2DKV A;  2WGC A;  1WGC A;  1WKX A;  1WGT A;  2LB7 A;  1P9G A;  7WGA A;  4MPI A;  2X3T A;  9WGA A;  1ULK A;  2UVO A;  1HEV A;  1ULM A;  2X52 A;  4WP4 A;  1UHA A;  1K7U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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