1K7UA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,4glcnac complex
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
molecule keywords agglutinin isolectin 3
total genus 45
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA04
9WGAA 4WP4A 2X3TA 1ULNA 2UVOA 2LB7A 1K7VA 1P9ZA 1WGTA 1WGCA 2WGCA 1ULKA 2DKVA 1K7TA 1P9GA 2X52A 4AMLA 1WKXA 1Q9BA 7WGAA 4MPIA 1UHAA 1K7UA 1HEVA 2CWGA 1ULMA
chains in the Genus database with same CATH superfamily
4JCVE 1SGPI 3MEKA 9WGAA 5FUVA 3TJQA 2KMRA 1SGEI 1CT4I 1MJBA 3TO6A 5JHWC 1XBTA 1Y1CA 2WGCA 4OVOA 1P9GA 1VDDA 3TOBA 4E1RA 5FUWA 1V1HA 1DS3I 1PPFI 2E5RA 2QQCA 2SGEI 2XRCA 3QAHA 1X74A 1R0RI 2NU3I 7WGAA 1KBFA 2ARPF 1Z7KB 2LUYA 2NU2I 2QQEA 3D00A 3OXLA 1PTRA 4MPIA 5DAEA 5HI7A 1TIHA 3SGBI 1FAQA 2JA1A 3UEJA 1N13A 1CSOI 2ORWA 1Y1BA 3FSXA 3TOAA 5J8FA 3BJIA 2GKRI 1HPTA 3SGQI 3UGLA 1K7UA 3FC3A 1HEVA 2QPOA 1MJ9A 1H0ZA 1DS2I 1TBNA 1UVFA 1TBQR 2SGPI 2X3TA 1CGJI 4HGUA 2NU4I 2P6AC 3R5DA 1OMTA 2KMPA 3SEKC 2SGFI 1K7VA 1KBEA 1HJAI 2L7XA 5E3PA 1BMOA 1PJUA 1W3SA 1AN1I 4FKDA 3GOXA 3HH2C 2DKVA 2JZMA 4SGBI 1RFHA 3KY9A 1TBOA 2OD1A 2QQDA 2J87A 1IY6A 1Q9BA 1M8BA 2Y0MA 1S20A 3UOEA 2OZUA 1PCEA 3PDNA 4E1PA 3OVOA 4GI3C 1OMUA 1SGQI 5EX0A 5HQ8A 2B8TA 1NXUA 2N1AB 1TGSI 2K9HA 1ULMA 1NUBA 1YU6C 1PTQA 1WTJA 2A20A 2KMQA 3RU0A 1LR7A 3VDPA 1ULNA 1W4RA 2LB7A 2DB6A 2ERWA 2UZ3A 3UGDA 3VE5A 2N52A 1Z2IA 2ODDA 1TUSA 1WGTA 1WGCA 2LEOA 1IW4A 1TBRR 2E73A 1LR8A 2JYYA 2ROWA 2YUUA 1BUSA 1SGYI 1M8CA 3OXGA 2ENZA 2NU1I 3QTLD 2X52A 4UXIA 1CGII 1HDLA 2JW6A 3OL0A 2KMOA 1IY5A 2SGQI 2SGDI 4L9MA 1FYBA 1KMAA 3R5AA 1OYVI 2L8EA 1Y8FA 4A24A 2M5XA 1R79A 1CHOI 1V1IA 1TURA 1XA6A 2ENNA 1SGNI 1UVGA 2BUSA 2PQ8A 2WCYA 3R5BA 1U5KA 2GVIA 3B4VC 1CT0I 2RIJA 2KCXA 4DNCA 2CWHA 2VRWB 2JXDA 2J9RA 1FY7A 1OVOA 1SGRI 2GKVA 2OU2A 4WP4A 2GIVA 2B0UC 2N71A 5CCMA 2UVOA 2V1CA 3FSYA 2CJSC 2ORVA 3OXFA 5FUYA 5E3QA 3TO9A 1P9ZA 2YQPA 1CT2I 1UUCA 1YTPA 1CE3A 2CWFA 2OVOA 1ULKA 2V53A 3CXLA 2V1CC 3E59A 4UXHA 1MJAA 3UFFA 1K7TA 5J8CA 5E3RA 2QQ0A 2ELIA 5EX3A 4AMLA 5CCLA 4UXJA 1SGDI 1WKXA 3UGIA 2GKTI 2W0TA 5FUXA 3VDUA 2F3CI 1FARA 3E2IA 3TO7A 3QWPA 1UHAA 1LR9A 2DIPA 3UEYA 2RC4A 2WVJA 3R5CA 2N17A 1X4SA 1XX6A 4B6DA 2FNFX 1MT1A 2CWGA 1TOTA 2NU0I
chains in the Genus database with same CATH topology
9WGAA 4WP4A 2X3TA 1ULNA 2UVOA 2LB7A 1K7VA 1P9ZA 1WGTA 1WGCA 2WGCA 1ULKA 2DKVA 1K7TA 1P9GA 2X52A 4AMLA 1WKXA 1Q9BA 7WGAA 4MPIA 1UHAA 1K7UA 1HEVA 2CWGA 1ULMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 9WGA A;  4WP4 A;  2X3T A;  1ULN A;  2UVO A;  2LB7 A;  1K7V A;  1P9Z A;  1WGT A;  1WGC A;  2WGC A;  1ULK A;  2DKV A;  1K7T A;  1P9G A;  2X52 A;  4AML A;  1WKX A;  1Q9B A;  7WGA A;  4MPI A;  1UHA A;  1K7U A;  1HEV A;  2CWG A;  1ULM A; 
#chains in the Genus database with same CATH topology
 4JCV E;  1SGP I;  3MEK A;  9WGA A;  5FUV A;  3TJQ A;  2KMR A;  1SGE I;  1CT4 I;  1MJB A;  3TO6 A;  5JHW C;  1XBT A;  1Y1C A;  2WGC A;  4OVO A;  1P9G A;  1VDD A;  3TOB A;  4E1R A;  5FUW A;  1V1H A;  1DS3 I;  1PPF I;  2E5R A;  2QQC A;  2SGE I;  2XRC A;  3QAH A;  1X74 A;  1R0R I;  2NU3 I;  7WGA A;  1KBF A;  2ARP F;  1Z7K B;  2LUY A;  2NU2 I;  2QQE A;  3D00 A;  3OXL A;  1PTR A;  4MPI A;  5DAE A;  5HI7 A;  1TIH A;  3SGB I;  1FAQ A;  2JA1 A;  3UEJ A;  1N13 A;  1CSO I;  2ORW A;  1Y1B A;  3FSX A;  3TOA A;  5J8F A;  3BJI A;  2GKR I;  1HPT A;  3SGQ I;  3UGL A;  1K7U A;  3FC3 A;  1HEV A;  2QPO A;  1MJ9 A;  1H0Z A;  1DS2 I;  1TBN A;  1UVF A;  1TBQ R;  2SGP I;  2X3T A;  1CGJ I;  4HGU A;  2NU4 I;  2P6A C;  3R5D A;  1OMT A;  2KMP A;  3SEK C;  2SGF I;  1K7V A;  1KBE A;  1HJA I;  2L7X A;  5E3P A;  1BMO A;  1PJU A;  1W3S A;  1AN1 I;  4FKD A;  3GOX A;  3HH2 C;  2DKV A;  2JZM A;  4SGB I;  1RFH A;  3KY9 A;  1TBO A;  2OD1 A;  2QQD A;  2J87 A;  1IY6 A;  1Q9B A;  1M8B A;  2Y0M A;  1S20 A;  3UOE A;  2OZU A;  1PCE A;  3PDN A;  4E1P A;  3OVO A;  4GI3 C;  1OMU A;  1SGQ I;  5EX0 A;  5HQ8 A;  2B8T A;  1NXU A;  2N1A B;  1TGS I;  2K9H A;  1ULM A;  1NUB A;  1YU6 C;  1PTQ A;  1WTJ A;  2A20 A;  2KMQ A;  3RU0 A;  1LR7 A;  3VDP A;  1ULN A;  1W4R A;  2LB7 A;  2DB6 A;  2ERW A;  2UZ3 A;  3UGD A;  3VE5 A;  2N52 A;  1Z2I A;  2ODD A;  1TUS A;  1WGT A;  1WGC A;  2LEO A;  1IW4 A;  1TBR R;  2E73 A;  1LR8 A;  2JYY A;  2ROW A;  2YUU A;  1BUS A;  1SGY I;  1M8C A;  3OXG A;  2ENZ A;  2NU1 I;  3QTL D;  2X52 A;  4UXI A;  1CGI I;  1HDL A;  2JW6 A;  3OL0 A;  2KMO A;  1IY5 A;  2SGQ I;  2SGD I;  4L9M A;  1FYB A;  1KMA A;  3R5A A;  1OYV I;  2L8E A;  1Y8F A;  4A24 A;  2M5X A;  1R79 A;  1CHO I;  1V1I A;  1TUR A;  1XA6 A;  2ENN A;  1SGN I;  1UVG A;  2BUS A;  2PQ8 A;  2WCY A;  3R5B A;  1U5K A;  2GVI A;  3B4V C;  1CT0 I;  2RIJ A;  2KCX A;  4DNC A;  2CWH A;  2VRW B;  2JXD A;  2J9R A;  1FY7 A;  1OVO A;  1SGR I;  2GKV A;  2OU2 A;  4WP4 A;  2GIV A;  2B0U C;  2N71 A;  5CCM A;  2UVO A;  2V1C A;  3FSY A;  2CJS C;  2ORV A;  3OXF A;  5FUY A;  5E3Q A;  3TO9 A;  1P9Z A;  2YQP A;  1CT2 I;  1UUC A;  1YTP A;  1CE3 A;  2CWF A;  2OVO A;  1ULK A;  2V53 A;  3CXL A;  2V1C C;  3E59 A;  4UXH A;  1MJA A;  3UFF A;  1K7T A;  5J8C A;  5E3R A;  2QQ0 A;  2ELI A;  5EX3 A;  4AML A;  5CCL A;  4UXJ A;  1SGD I;  1WKX A;  3UGI A;  2GKT I;  2W0T A;  5FUX A;  3VDU A;  2F3C I;  1FAR A;  3E2I A;  3TO7 A;  3QWP A;  1UHA A;  1LR9 A;  2DIP A;  3UEY A;  2RC4 A;  2WVJ A;  3R5C A;  2N17 A;  1X4S A;  1XX6 A;  4B6D A;  2FNF X;  1MT1 A;  2CWG A;  1TOT A;  2NU0 I; 
#chains in the Genus database with same CATH homology
 9WGA A;  4WP4 A;  2X3T A;  1ULN A;  2UVO A;  2LB7 A;  1K7V A;  1P9Z A;  1WGT A;  1WGC A;  2WGC A;  1ULK A;  2DKV A;  1K7T A;  1P9G A;  2X52 A;  4AML A;  1WKX A;  1Q9B A;  7WGA A;  4MPI A;  1UHA A;  1K7U A;  1HEV A;  2CWG A;  1ULM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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