1K7UA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,4glcnac complex
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords agglutinin isolectin 3
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
total genus 45
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7uA04
4MPIA 1ULNA 4AMLA 2LB7A 4WP4A 1WGCA 2UVOA 1K7UA 7WGAA 1WKXA 1UHAA 2X52A 1K7TA 1WGTA 2X3TA 2DKVA 2WGCA 2CWGA 1ULMA 1P9GA 1K7VA 9WGAA 1Q9BA 1P9ZA 1HEVA 1ULKA
chains in the Genus database with same CATH superfamily
4MPIA 5DAEA 1SGEI 1R79A 2QQCA 4E1PA 2V1CA 2ROWA 3TO6A 1SGRI 2NU2I 5EX3A 1V1HA 3FSXA 5E3RA 2A20A 3KY9A 3UEJA 3UGDA 2ENZA 2OVOA 1PTQA 2FNFX 3UGLA 1UUCA 2YQPA 1KMAA 2KMPA 1MJAA 1WTJA 5HI7A 2ARPF 3UGIA 2CJSC 1TGSI 3FC3A 4DNCA 2KMRA 1FARA 1W4RA 2J87A 2KMOA 2DKVA 1Y1CA 1OMUA 3R5DA 2NU1I 1R0RI 1HPTA 2L7XA 3OL0A 2V1CC 1IY5A 1TOTA 2E73A 1IW4A 1NXUA 1SGNI 2N1AB 1X74A 3TOBA 1S20A 5J8FA 1UVFA 1KBFA 2GKRI 1BMOA 1M8CA 2NU4I 2B0UC 1OVOA 1Z2IA 5FUYA 2CWHA 5E3QA 1LR8A 4JCVE 4SGBI 2SGFI 2ERWA 1OYVI 2QQEA 5CCLA 2LUYA 4WP4A 4E1RA 1MT1A 1CGII 3OXLA 1IY6A 1K7UA 2QPOA 3BJIA 5FUXA 3QAHA 1FY7A 1TBRR 1UHAA 5E3PA 4B6DA 2M5XA 2X52A 3VE5A 1PJUA 3RU0A 4A24A 2UZ3A 2Y0MA 4GI3C 1WGTA 1SGYI 2X3TA 4FKDA 1RFHA 1CGJI 2OZUA 2CWGA 1CT4I 1BUSA 2KMQA 5EX0A 3B4VC 2RC4A 5FUVA 1Q9BA 2JXDA 2NU3I 1CT2I 3E59A 4L9MA 1LR9A 2J9RA 2ORWA 5CCMA 3GOXA 2N52A 3SGQI 2P6AC 2PQ8A 3R5CA 1ULNA 2YUUA 2RIJA 1W3SA 1HDLA 2VRWB 1CE3A 3SEKC 1U5KA 1SGQI 1M8BA 2SGEI 4AMLA 1PTRA 1VDDA 3VDUA 4UXJA 2UVOA 3OXGA 1FYBA 1V1IA 2ORVA 1WKXA 1N13A 3SGBI 1AN1I 1MJBA 3TJQA 4HGUA 3TO7A 5J8CA 1H0ZA 1PCEA 3QWPA 1TBNA 1PPFI 1Z7KB 1DS3I 1CT0I 1XX6A 1YTPA 1CSOI 2WGCA 4UXHA 1ULMA 3D00A 3E2IA 2OU2A 2QQ0A 3R5AA 4UXIA 2ENNA 1XBTA 2GKVA 3MEKA 1P9ZA 3UOEA 1ULKA 1KBEA 2B8TA 2E5RA 1NUBA 2ELIA 2QQDA 2NU0I 2N17A 5JHWC 1TIHA 1SGDI 1TUSA 2JA1A 2N71A 3CXLA 2LEOA 3R5BA 2JYYA 2JZMA 2K9HA 1XA6A 2LB7A 2W0TA 3TO9A 2BUSA 2KCXA 3UFFA 3VDPA 1TBOA 1DS2I 1SGPI 2CWFA 2WCYA 1HJAI 1WGCA 2F3CI 2WVJA 3PDNA 1FAQA 2SGDI 2L8EA 7WGAA 4OVOA 2V53A 2DB6A 1OMTA 2ODDA 1K7TA 1LR7A 1UVGA 1YU6C 1X4SA 3OXFA 3UEYA 1Y8FA 3OVOA 3QTLD 1CHOI 2DIPA 1TBQR 2GKTI 2OD1A 1P9GA 1K7VA 2JW6A 3HH2C 3FSYA 9WGAA 1Y1BA 2GIVA 2SGQI 2XRCA 3TOAA 2GVIA 1HEVA 1TURA 5FUWA 1MJ9A 2SGPI 5HQ8A
chains in the Genus database with same CATH topology
4MPIA 1ULNA 4AMLA 2LB7A 4WP4A 1WGCA 2UVOA 1K7UA 7WGAA 1WKXA 1UHAA 2X52A 1K7TA 1WGTA 2X3TA 2DKVA 2WGCA 2CWGA 1ULMA 1P9GA 1K7VA 9WGAA 1Q9BA 1P9ZA 1HEVA 1ULKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MPI A;  1ULN A;  4AML A;  2LB7 A;  4WP4 A;  1WGC A;  2UVO A;  1K7U A;  7WGA A;  1WKX A;  1UHA A;  2X52 A;  1K7T A;  1WGT A;  2X3T A;  2DKV A;  2WGC A;  2CWG A;  1ULM A;  1P9G A;  1K7V A;  9WGA A;  1Q9B A;  1P9Z A;  1HEV A;  1ULK A; 
#chains in the Genus database with same CATH topology
 4MPI A;  5DAE A;  1SGE I;  1R79 A;  2QQC A;  4E1P A;  2V1C A;  2ROW A;  3TO6 A;  1SGR I;  2NU2 I;  5EX3 A;  1V1H A;  3FSX A;  5E3R A;  2A20 A;  3KY9 A;  3UEJ A;  3UGD A;  2ENZ A;  2OVO A;  1PTQ A;  2FNF X;  3UGL A;  1UUC A;  2YQP A;  1KMA A;  2KMP A;  1MJA A;  1WTJ A;  5HI7 A;  2ARP F;  3UGI A;  2CJS C;  1TGS I;  3FC3 A;  4DNC A;  2KMR A;  1FAR A;  1W4R A;  2J87 A;  2KMO A;  2DKV A;  1Y1C A;  1OMU A;  3R5D A;  2NU1 I;  1R0R I;  1HPT A;  2L7X A;  3OL0 A;  2V1C C;  1IY5 A;  1TOT A;  2E73 A;  1IW4 A;  1NXU A;  1SGN I;  2N1A B;  1X74 A;  3TOB A;  1S20 A;  5J8F A;  1UVF A;  1KBF A;  2GKR I;  1BMO A;  1M8C A;  2NU4 I;  2B0U C;  1OVO A;  1Z2I A;  5FUY A;  2CWH A;  5E3Q A;  1LR8 A;  4JCV E;  4SGB I;  2SGF I;  2ERW A;  1OYV I;  2QQE A;  5CCL A;  2LUY A;  4WP4 A;  4E1R A;  1MT1 A;  1CGI I;  3OXL A;  1IY6 A;  1K7U A;  2QPO A;  3BJI A;  5FUX A;  3QAH A;  1FY7 A;  1TBR R;  1UHA A;  5E3P A;  4B6D A;  2M5X A;  2X52 A;  3VE5 A;  1PJU A;  3RU0 A;  4A24 A;  2UZ3 A;  2Y0M A;  4GI3 C;  1WGT A;  1SGY I;  2X3T A;  4FKD A;  1RFH A;  1CGJ I;  2OZU A;  2CWG A;  1CT4 I;  1BUS A;  2KMQ A;  5EX0 A;  3B4V C;  2RC4 A;  5FUV A;  1Q9B A;  2JXD A;  2NU3 I;  1CT2 I;  3E59 A;  4L9M A;  1LR9 A;  2J9R A;  2ORW A;  5CCM A;  3GOX A;  2N52 A;  3SGQ I;  2P6A C;  2PQ8 A;  3R5C A;  1ULN A;  2YUU A;  2RIJ A;  1W3S A;  1HDL A;  2VRW B;  1CE3 A;  3SEK C;  1U5K A;  1SGQ I;  1M8B A;  2SGE I;  4AML A;  1PTR A;  1VDD A;  3VDU A;  4UXJ A;  2UVO A;  3OXG A;  1FYB A;  1V1I A;  2ORV A;  1WKX A;  1N13 A;  3SGB I;  1AN1 I;  1MJB A;  3TJQ A;  4HGU A;  3TO7 A;  5J8C A;  1H0Z A;  1PCE A;  3QWP A;  1TBN A;  1PPF I;  1Z7K B;  1DS3 I;  1CT0 I;  1XX6 A;  1YTP A;  1CSO I;  2WGC A;  4UXH A;  1ULM A;  3D00 A;  3E2I A;  2OU2 A;  2QQ0 A;  3R5A A;  4UXI A;  2ENN A;  1XBT A;  2GKV A;  3MEK A;  1P9Z A;  3UOE A;  1ULK A;  1KBE A;  2B8T A;  2E5R A;  1NUB A;  2ELI A;  2QQD A;  2NU0 I;  2N17 A;  5JHW C;  1TIH A;  1SGD I;  1TUS A;  2JA1 A;  2N71 A;  3CXL A;  2LEO A;  3R5B A;  2JYY A;  2JZM A;  2K9H A;  1XA6 A;  2LB7 A;  2W0T A;  3TO9 A;  2BUS A;  2KCX A;  3UFF A;  3VDP A;  1TBO A;  1DS2 I;  1SGP I;  2CWF A;  2WCY A;  1HJA I;  1WGC A;  2F3C I;  2WVJ A;  3PDN A;  1FAQ A;  2SGD I;  2L8E A;  7WGA A;  4OVO A;  2V53 A;  2DB6 A;  1OMT A;  2ODD A;  1K7T A;  1LR7 A;  1UVG A;  1YU6 C;  1X4S A;  3OXF A;  3UEY A;  1Y8F A;  3OVO A;  3QTL D;  1CHO I;  2DIP A;  1TBQ R;  2GKT I;  2OD1 A;  1P9G A;  1K7V A;  2JW6 A;  3HH2 C;  3FSY A;  9WGA A;  1Y1B A;  2GIV A;  2SGQ I;  2XRC A;  3TOA A;  2GVI A;  1HEV A;  1TUR A;  5FUW A;  1MJ9 A;  2SGP I;  5HQ8 A; 
#chains in the Genus database with same CATH homology
 4MPI A;  1ULN A;  4AML A;  2LB7 A;  4WP4 A;  1WGC A;  2UVO A;  1K7U A;  7WGA A;  1WKX A;  1UHA A;  2X52 A;  1K7T A;  1WGT A;  2X3T A;  2DKV A;  2WGC A;  2CWG A;  1ULM A;  1P9G A;  1K7V A;  9WGA A;  1Q9B A;  1P9Z A;  1HEV A;  1ULK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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