1R79A

Solution structure of the c1 domain of the human diacylglycerol kinase delta
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
84
structure length
84
Chain Sequence
GSSGSSGTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGPSSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Homo sapiens
publication title Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
rcsb
molecule keywords Diacylglycerol kinase, delta
total genus 7
structure length 84
sequence length 84
ec nomenclature ec 2.7.1.107: Diacylglycerol kinase (ATP).
pdb deposition date 2003-10-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1r79A01
1RFHA 2ENZA 1PTQA 1TBOA 2GVIA 3UEJA 2ELIA 3UGIA 1Y8FA 1FAQA 1FARA 2QQ0A 1XBTA 3UEYA 2VRWB 4L9MA 4UXIA 3E2IA 2J87A 2J9RA 4FKDA 2JA1A 1PTRA 2YUUA 2ORVA 3UGLA 5FUYA 1KBEA 1R79A 1XX6A 2FNFX 1TBNA 2ENNA 3BJIA 3KY9A 3UFFA 2DB6A 1KBFA 2ROWA 2QQEA 1XA6A 2WVJA 4B6DA 2UZ3A 5FUXA 2QPOA 2B8TA 4UXJA 3CXLA 3UGDA 4UXHA 1W4RA 5FUWA 5FUVA 2E73A 2ORWA
chains in the Genus database with same CATH superfamily
1Y1CA 1PTQA 2V53A 1SGYI 3UEJA 2N52A 1NUBA 1PCEA 1WGCA 1FAQA 1FARA 1M8BA 1YTPA 3TOBA 3UEYA 1K7VA 2VRWB 1KMAA 2DKVA 3FSYA 1K7UA 3E2IA 1V1HA 2NU3I 2J87A 1CHOI 2J9RA 4FKDA 3TO7A 2ORVA 1X4SA 2L7XA 3VDPA 1MJBA 1K7TA 1KBEA 5FUYA 3QTLD 1HJAI 1CGJI 2Y0MA 3UFFA 3OVOA 4JCVE 5J8FA 1U5KA 2ROWA 1KBFA 1XA6A 5E3PA 5HQ8A 1S20A 2RIJA 2QPOA 3CXLA 3OXLA 1W4RA 2A20A 4E1PA 1CT4I 1YU6C 2JYYA 2ORWA 4MPIA 1ULMA 1WKXA 2GVIA 1N13A 1TBQR 2ODDA 1LR9A 2CWGA 2ELIA 5EX3A 2PQ8A 1CSOI 1BMOA 1Y8FA 3UGIA 4DNCA 2CJSC 2GKVA 3HH2C 1OVOA 1ULKA 3SEKC 2KMPA 1PPFI 1ULNA 2JXDA 2LUYA 1UVFA 2M5XA 2NU4I 5CCLA 1CT0I 2JA1A 1PTRA 3D00A 3TOAA 3UGLA 3VE5A 2KMOA 1R79A 1HPTA 1LR7A 1TBNA 2ARPF 1CT2I 2FNFX 2JZMA 2NU1I 2SGQI 2WGCA 2SGFI 2JW6A 2X3TA 5HI7A 5JHWC 2QQEA 1H0ZA 4B6DA 3SGBI 3R5CA 2BUSA 2UZ3A 1SGEI 4AMLA 4UXJA 2F3CI 1TIHA 3UGDA 1FY7A 3TJQA 1UHAA 2X52A 1V1IA 4HGUA 2CWHA 2DIPA 1TBOA 5EX0A 3OXGA 1HDLA 1UVGA 1SGNI 1R0RI 1TUSA 2SGDI 1HEVA 4SGBI 2QQ0A 3UOEA 4GI3C 1XBTA 2LEOA 2OVOA 2N17A 2V1CC 3TO6A 4L9MA 1PJUA 3E59A 4UXIA 5CCMA 1CE3A 3TO9A 4E1RA 2KMQA 2E5RA 1MJ9A 1OMUA 3R5BA 1CGII 1SGPI 2YUUA 4A24A 1BUSA 1Z2IA 1XX6A 2OD1A 7WGAA 1SGDI 1TGSI 2OZUA 1P9ZA 2KCXA 1P9GA 5DAEA 1OMTA 2N71A 1FYBA 1X74A 5E3RA 9WGAA 3FSXA 3FC3A 2K9HA 1OYVI 3MEKA 4UXHA 2ERWA 5FUWA 5FUVA 2P6AC 3OXFA 2SGEI 1WTJA 1RFHA 2WCYA 2ENZA 2UVOA 3GOXA 3QAHA 3SGQI 2NU2I 2GKTI 1DS2I 2GKRI 1Q9BA 2RC4A 2V1CA 2LB7A 2KMRA 1TURA 1LR8A 1W3SA 4OVOA 2OU2A 2B0UC 1MJAA 1MT1A 2CWFA 3B4VC 2QQDA 1Z7KB 3R5AA 3R5DA 1AN1I 1TBRR 1TOTA 1SGQI 3RU0A 1IY5A 1VDDA 2YQPA 2L8EA 1M8CA 1IY6A 3BJIA 2ENNA 3KY9A 4WP4A 2DB6A 2SGPI 2XRCA 3QWPA 2NU0I 3VDUA 1Y1BA 2N1AB 1UUCA 2WVJA 1DS3I 2GIVA 5E3QA 1NXUA 2QQCA 2W0TA 5FUXA 5J8CA 3PDNA 2B8TA 1SGRI 3OL0A 1IW4A 2E73A 1WGTA
chains in the Genus database with same CATH topology
1Y1CA 1PTQA 2V53A 1SGYI 2N52A 1NUBA 1PCEA 1FAQA 1FARA 1M8BA 1YTPA 3UEYA 2VRWB 1KMAA 3E2IA 1V1HA 2NU3I 2J87A 1CHOI 2J9RA 4FKDA 2ORVA 1X4SA 2L7XA 3VDPA 5FUYA 1KBEA 3QTLD 1HJAI 1CGJI 3UFFA 3OVOA 4JCVE 1KBFA 1U5KA 2ROWA 1XA6A 5HQ8A 2QPOA 3CXLA 3OXLA 1W4RA 2A20A 4E1PA 1CT4I 1YU6C 2JYYA 2ORWA 5EX3A 2GVIA 3UEJA 1N13A 1TBQR 2ODDA 1LR9A 3GOXA 2ELIA 3UGIA 1CSOI 1BMOA 1Y8FA 2CJSC 2GKVA 3HH2C 1OVOA 3SEKC 2KMPA 1PPFI 2JXDA 2LUYA 1UVFA 2M5XA 2NU4I 5CCLA 1CT0I 2JA1A 1PTRA 3D00A 3UGLA 3VE5A 2KMOA 1R79A 1HPTA 1LR7A 1TBNA 2ARPF 1CT2I 2FNFX 2JZMA 2NU1I 2SGQI 1H0ZA 2SGFI 2JW6A 5HI7A 5JHWC 2QQEA 4B6DA 3SGBI 2BUSA 2UZ3A 1SGEI 4UXJA 2F3CI 1TIHA 3UGDA 3TJQA 1V1IA 4HGUA 2DIPA 1TBOA 5EX0A 3OXGA 1HDLA 1UVGA 1SGNI 1R0RI 1TUSA 2SGDI 4SGBI 2QQ0A 4GI3C 1XBTA 2LEOA 2OVOA 2N17A 2V1CC 5CCMA 4L9MA 1PJUA 3E59A 4UXIA 1CE3A 4E1RA 2KMQA 2E5RA 1OMUA 1CGII 1SGPI 2YUUA 4A24A 1BUSA 1XX6A 2OD1A 1SGDI 1TGSI 2KCXA 5DAEA 1OMTA 2N71A 1FYBA 1X74A 3FC3A 2K9HA 1OYVI 3MEKA 4UXHA 2ERWA 5FUWA 5FUVA 2P6AC 3OXFA 2SGEI 1RFHA 2WCYA 2ENZA 3SGQI 2NU2I 2GKTI 1DS2I 2GKRI 2V1CA 2KMRA 1TURA 1LR8A 1W3SA 4OVOA 2B0UC 3B4VC 1MT1A 3RU0A 2QQDA 1Z7KB 1AN1I 1TBRR 1TOTA 1SGQI 1IY5A 1VDDA 2YQPA 2L8EA 1M8CA 1IY6A 3BJIA 2ENNA 3KY9A 2DB6A 2SGPI 2XRCA 3QWPA 2NU0I 3VDUA 1Y1BA 2N1AB 1UUCA 2WVJA 1DS3I 2QQCA 2W0TA 5FUXA 3PDNA 2B8TA 1SGRI 3OL0A 1IW4A 2E73A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RFH A;  2ENZ A;  1PTQ A;  1TBO A;  2GVI A;  3UEJ A;  2ELI A;  3UGI A;  1Y8F A;  1FAQ A;  1FAR A;  2QQ0 A;  1XBT A;  3UEY A;  2VRW B;  4L9M A;  4UXI A;  3E2I A;  2J87 A;  2J9R A;  4FKD A;  2JA1 A;  1PTR A;  2YUU A;  2ORV A;  3UGL A;  5FUY A;  1KBE A;  1R79 A;  1XX6 A;  2FNF X;  1TBN A;  2ENN A;  3BJI A;  3KY9 A;  3UFF A;  2DB6 A;  1KBF A;  2ROW A;  2QQE A;  1XA6 A;  2WVJ A;  4B6D A;  2UZ3 A;  5FUX A;  2QPO A;  2B8T A;  4UXJ A;  3CXL A;  3UGD A;  4UXH A;  1W4R A;  5FUW A;  5FUV A;  2E73 A;  2ORW A; 
#chains in the Genus database with same CATH topology
 1Y1C A;  1PTQ A;  2V53 A;  1SGY I;  3UEJ A;  2N52 A;  1NUB A;  1PCE A;  1WGC A;  1FAQ A;  1FAR A;  1M8B A;  1YTP A;  3TOB A;  3UEY A;  1K7V A;  2VRW B;  1KMA A;  2DKV A;  3FSY A;  1K7U A;  3E2I A;  1V1H A;  2NU3 I;  2J87 A;  1CHO I;  2J9R A;  4FKD A;  3TO7 A;  2ORV A;  1X4S A;  2L7X A;  3VDP A;  1MJB A;  1K7T A;  1KBE A;  5FUY A;  3QTL D;  1HJA I;  1CGJ I;  2Y0M A;  3UFF A;  3OVO A;  4JCV E;  5J8F A;  1U5K A;  2ROW A;  1KBF A;  1XA6 A;  5E3P A;  5HQ8 A;  1S20 A;  2RIJ A;  2QPO A;  3CXL A;  3OXL A;  1W4R A;  2A20 A;  4E1P A;  1CT4 I;  1YU6 C;  2JYY A;  2ORW A;  4MPI A;  1ULM A;  1WKX A;  2GVI A;  1N13 A;  1TBQ R;  2ODD A;  1LR9 A;  2CWG A;  2ELI A;  5EX3 A;  2PQ8 A;  1CSO I;  1BMO A;  1Y8F A;  3UGI A;  4DNC A;  2CJS C;  2GKV A;  3HH2 C;  1OVO A;  1ULK A;  3SEK C;  2KMP A;  1PPF I;  1ULN A;  2JXD A;  2LUY A;  1UVF A;  2M5X A;  2NU4 I;  5CCL A;  1CT0 I;  2JA1 A;  1PTR A;  3D00 A;  3TOA A;  3UGL A;  3VE5 A;  2KMO A;  1R79 A;  1HPT A;  1LR7 A;  1TBN A;  2ARP F;  1CT2 I;  2FNF X;  2JZM A;  2NU1 I;  2SGQ I;  2WGC A;  2SGF I;  2JW6 A;  2X3T A;  5HI7 A;  5JHW C;  2QQE A;  1H0Z A;  4B6D A;  3SGB I;  3R5C A;  2BUS A;  2UZ3 A;  1SGE I;  4AML A;  4UXJ A;  2F3C I;  1TIH A;  3UGD A;  1FY7 A;  3TJQ A;  1UHA A;  2X52 A;  1V1I A;  4HGU A;  2CWH A;  2DIP A;  1TBO A;  5EX0 A;  3OXG A;  1HDL A;  1UVG A;  1SGN I;  1R0R I;  1TUS A;  2SGD I;  1HEV A;  4SGB I;  2QQ0 A;  3UOE A;  4GI3 C;  1XBT A;  2LEO A;  2OVO A;  2N17 A;  2V1C C;  3TO6 A;  4L9M A;  1PJU A;  3E59 A;  4UXI A;  5CCM A;  1CE3 A;  3TO9 A;  4E1R A;  2KMQ A;  2E5R A;  1MJ9 A;  1OMU A;  3R5B A;  1CGI I;  1SGP I;  2YUU A;  4A24 A;  1BUS A;  1Z2I A;  1XX6 A;  2OD1 A;  7WGA A;  1SGD I;  1TGS I;  2OZU A;  1P9Z A;  2KCX A;  1P9G A;  5DAE A;  1OMT A;  2N71 A;  1FYB A;  1X74 A;  5E3R A;  9WGA A;  3FSX A;  3FC3 A;  2K9H A;  1OYV I;  3MEK A;  4UXH A;  2ERW A;  5FUW A;  5FUV A;  2P6A C;  3OXF A;  2SGE I;  1WTJ A;  1RFH A;  2WCY A;  2ENZ A;  2UVO A;  3GOX A;  3QAH A;  3SGQ I;  2NU2 I;  2GKT I;  1DS2 I;  2GKR I;  1Q9B A;  2RC4 A;  2V1C A;  2LB7 A;  2KMR A;  1TUR A;  1LR8 A;  1W3S A;  4OVO A;  2OU2 A;  2B0U C;  1MJA A;  1MT1 A;  2CWF A;  3B4V C;  2QQD A;  1Z7K B;  3R5A A;  3R5D A;  1AN1 I;  1TBR R;  1TOT A;  1SGQ I;  3RU0 A;  1IY5 A;  1VDD A;  2YQP A;  2L8E A;  1M8C A;  1IY6 A;  3BJI A;  2ENN A;  3KY9 A;  4WP4 A;  2DB6 A;  2SGP I;  2XRC A;  3QWP A;  2NU0 I;  3VDU A;  1Y1B A;  2N1A B;  1UUC A;  2WVJ A;  1DS3 I;  2GIV A;  5E3Q A;  1NXU A;  2QQC A;  2W0T A;  5FUX A;  5J8C A;  3PDN A;  2B8T A;  1SGR I;  3OL0 A;  1IW4 A;  2E73 A;  1WGT A; 
#chains in the Genus database with same CATH homology
 1Y1C A;  1PTQ A;  2V53 A;  1SGY I;  2N52 A;  1NUB A;  1PCE A;  1FAQ A;  1FAR A;  1M8B A;  1YTP A;  3UEY A;  2VRW B;  1KMA A;  3E2I A;  1V1H A;  2NU3 I;  2J87 A;  1CHO I;  2J9R A;  4FKD A;  2ORV A;  1X4S A;  2L7X A;  3VDP A;  5FUY A;  1KBE A;  3QTL D;  1HJA I;  1CGJ I;  3UFF A;  3OVO A;  4JCV E;  1KBF A;  1U5K A;  2ROW A;  1XA6 A;  5HQ8 A;  2QPO A;  3CXL A;  3OXL A;  1W4R A;  2A20 A;  4E1P A;  1CT4 I;  1YU6 C;  2JYY A;  2ORW A;  5EX3 A;  2GVI A;  3UEJ A;  1N13 A;  1TBQ R;  2ODD A;  1LR9 A;  3GOX A;  2ELI A;  3UGI A;  1CSO I;  1BMO A;  1Y8F A;  2CJS C;  2GKV A;  3HH2 C;  1OVO A;  3SEK C;  2KMP A;  1PPF I;  2JXD A;  2LUY A;  1UVF A;  2M5X A;  2NU4 I;  5CCL A;  1CT0 I;  2JA1 A;  1PTR A;  3D00 A;  3UGL A;  3VE5 A;  2KMO A;  1R79 A;  1HPT A;  1LR7 A;  1TBN A;  2ARP F;  1CT2 I;  2FNF X;  2JZM A;  2NU1 I;  2SGQ I;  1H0Z A;  2SGF I;  2JW6 A;  5HI7 A;  5JHW C;  2QQE A;  4B6D A;  3SGB I;  2BUS A;  2UZ3 A;  1SGE I;  4UXJ A;  2F3C I;  1TIH A;  3UGD A;  3TJQ A;  1V1I A;  4HGU A;  2DIP A;  1TBO A;  5EX0 A;  3OXG A;  1HDL A;  1UVG A;  1SGN I;  1R0R I;  1TUS A;  2SGD I;  4SGB I;  2QQ0 A;  4GI3 C;  1XBT A;  2LEO A;  2OVO A;  2N17 A;  2V1C C;  5CCM A;  4L9M A;  1PJU A;  3E59 A;  4UXI A;  1CE3 A;  4E1R A;  2KMQ A;  2E5R A;  1OMU A;  1CGI I;  1SGP I;  2YUU A;  4A24 A;  1BUS A;  1XX6 A;  2OD1 A;  1SGD I;  1TGS I;  2KCX A;  5DAE A;  1OMT A;  2N71 A;  1FYB A;  1X74 A;  3FC3 A;  2K9H A;  1OYV I;  3MEK A;  4UXH A;  2ERW A;  5FUW A;  5FUV A;  2P6A C;  3OXF A;  2SGE I;  1RFH A;  2WCY A;  2ENZ A;  3SGQ I;  2NU2 I;  2GKT I;  1DS2 I;  2GKR I;  2V1C A;  2KMR A;  1TUR A;  1LR8 A;  1W3S A;  4OVO A;  2B0U C;  3B4V C;  1MT1 A;  3RU0 A;  2QQD A;  1Z7K B;  1AN1 I;  1TBR R;  1TOT A;  1SGQ I;  1IY5 A;  1VDD A;  2YQP A;  2L8E A;  1M8C A;  1IY6 A;  3BJI A;  2ENN A;  3KY9 A;  2DB6 A;  2SGP I;  2XRC A;  3QWP A;  2NU0 I;  3VDU A;  1Y1B A;  2N1A B;  1UUC A;  2WVJ A;  1DS3 I;  2QQC A;  2W0T A;  5FUX A;  3PDN A;  2B8T A;  1SGR I;  3OL0 A;  1IW4 A;  2E73 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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