1R79A

Solution structure of the c1 domain of the human diacylglycerol kinase delta
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
84
structure length
84
Chain Sequence
GSSGSSGTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Diacylglycerol kinase, delta
publication title Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
rcsb
source organism Homo sapiens
molecule tags Transferase
total genus 7
structure length 84
sequence length 84
ec nomenclature ec 2.7.1.107: Diacylglycerol kinase (ATP).
pdb deposition date 2003-10-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.20 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1r79A01
2WVJA 4L9MA 5FUWA 1XA6A 2ELIA 3KY9A 1PTQA 2B8TA 2JA1A 2QQEA 5FUVA 1XBTA 2VRWB 4UXJA 2J87A 4UXHA 2ORWA 5FUXA 1KBFA 3UGIA 2ROWA 2ENZA 1Y8FA 1W4RA 1KBEA 1FARA 2GVIA 3UGLA 5FUYA 2YUUA 2QPOA 3E2IA 3UGDA 4B6DA 1XX6A 1TBNA 1R79A 3UEYA 1PTRA 3UEJA 1RFHA 2FNFX 4FKDA 3BJIA 3CXLA 2DB6A 2ENNA 4UXIA 1FAQA 2UZ3A 2ORVA 2QQ0A 2E73A 2J9RA 1TBOA 3UFFA
chains in the Genus database with same CATH superfamily
1CT0I 3SGBI 2WVJA 1NUBA 2CJSC 5FUWA 2CWFA 3R5AA 3SEKC 2ELIA 2RIJA 1PTQA 2GKRI 2B8TA 3OXGA 3R5BA 4HGUA 1WKXA 5FUVA 2WGCA 4UXJA 1VDDA 3VDPA 2ORWA 4GI3C 1M8CA 2L7XA 1SGPI 1Y8FA 1KBEA 3TO7A 1IY5A 4WP4A 1X4SA 1HJAI 2QPOA 1ULNA 2Y0MA 1TBNA 4SGBI 1CT4I 2ERWA 3SGQI 3UEYA 2DKVA 3UEJA 1HEVA 2N1AB 2N52A 5E3RA 7WGAA 1WGTA 1HPTA 1R0RI 2W0TA 2E5RA 1TOTA 3FSXA 3TOAA 4E1RA 2LUYA 4UXIA 1TGSI 3D00A 5DAEA 5HI7A 1BMOA 1IW4A 2SGPI 4JCVE 9WGAA 1LR7A 2L8EA 1NXUA 1TBOA 2LB7A 1SGYI 1UUCA 2X3TA 3R5CA 5J8CA 1OYVI 1TIHA 1Z2IA 3KY9A 2OD1A 2V53A 2J87A 4UXHA 1K7TA 1KBFA 3OL0A 3UGIA 2ENZA 5CCLA 2CWHA 1CT2I 1FARA 3FSYA 1V1IA 2GVIA 3TJQA 3UGLA 1TBQR 5J8FA 1H0ZA 2YUUA 1SGNI 2OU2A 3UGDA 4B6DA 1WGCA 5EX3A 3UOEA 1HDLA 2JW6A 1SGDI 5CCMA 2NU3I 3OXLA 1FY7A 1OMTA 2N71A 2UVOA 2X52A 3BJIA 3CXLA 2BUSA 3PDNA 1CE3A 2DB6A 1W3SA 2UZ3A 2GIVA 1PPFI 2QQ0A 5E3PA 1SGQI 2J9RA 2N17A 2SGDI 3QAHA 2GKVA 3VE5A 3FC3A 3UFFA 1SGEI 1X74A 1Z7KB 1CGJI 1AN1I 2KCXA 2YQPA 3HH2C 2NU4I 3TO6A 1Q9BA 2V1CC 1CHOI 2OZUA 5HQ8A 2JA1A 2ARPF 1Y1BA 2KMQA 2QQEA 3QTLD 1XBTA 5FUXA 1PCEA 1OVOA 1K7VA 2QQCA 1OMUA 1TBRR 4MPIA 1Y1CA 2LEOA 2XRCA 4OVOA 1UVGA 5FUYA 2SGFI 1DS3I 3E2IA 1S20A 1XX6A 2CWGA 2KMOA 3B4VC 1BUSA 1MT1A 1PTRA 1RFHA 4A24A 1PJUA 2NU1I 3GOXA 3E59A 1UHAA 2KMPA 5JHWC 2K9HA 2P6AC 1V1HA 2GKTI 1CSOI 1YTPA 3TOBA 2E73A 1KMAA 1YU6C 4L9MA 2B0UC 1FYBA 3TO9A 1XA6A 2F3CI 2JZMA 2JXDA 1TUSA 1MJBA 2VRWB 1N13A 4AMLA 2KMRA 1MJAA 2ROWA 5E3QA 2QQDA 1W4RA 2ODDA 2PQ8A 1SGRI 1P9ZA 1CGII 1LR8A 1TURA 1U5KA 2A20A 3RU0A 2RC4A 2OVOA 3OXFA 2JYYA 1ULMA 1UVFA 1LR9A 1R79A 1M8BA 1K7UA 2FNFX 2V1CA 1P9GA 1ULKA 4FKDA 3MEKA 3OVOA 2NU2I 2ENNA 1FAQA 3R5DA 2NU0I 2ORVA 2SGEI 1WTJA 3QWPA 2DIPA 2M5XA 5EX0A 2WCYA 1DS2I 4DNCA 4E1PA 1MJ9A 1IY6A 2SGQI 3VDUA
chains in the Genus database with same CATH topology
1CT0I 3SGBI 2WVJA 1NUBA 2CJSC 5FUWA 3SEKC 2ELIA 3OXGA 1PTQA 2GKRI 2B8TA 4HGUA 5FUVA 4UXJA 1VDDA 3VDPA 2ORWA 4GI3C 1M8CA 2L7XA 1SGPI 1Y8FA 1KBEA 1IY5A 1X4SA 1HJAI 2QPOA 1TBNA 4SGBI 1CT4I 2ERWA 3SGQI 3UEYA 3UEJA 2N1AB 2N52A 2W0TA 1HPTA 1R0RI 4E1RA 2E5RA 1TOTA 2LUYA 4UXIA 1TGSI 3D00A 5DAEA 5HI7A 1BMOA 1IW4A 2SGPI 4JCVE 1LR7A 2L8EA 1TBOA 1SGYI 1UUCA 1OYVI 1TIHA 3KY9A 2OD1A 2V53A 2J87A 4UXHA 1KBFA 3OL0A 3UGIA 2ENZA 1CT2I 1FARA 1V1IA 2GVIA 3TJQA 3UGLA 1TBQR 1H0ZA 2YUUA 1SGNI 3UGDA 4B6DA 5EX3A 1HDLA 2JW6A 1SGDI 5CCMA 2NU3I 3OXLA 1OMTA 2N71A 3BJIA 3CXLA 2BUSA 3PDNA 1CE3A 2DB6A 1W3SA 2UZ3A 1PPFI 2QQ0A 1SGQI 2J9RA 2N17A 2SGDI 3VE5A 2GKVA 3FC3A 3UFFA 1Z7KB 1SGEI 1X74A 1CGJI 1AN1I 2KCXA 2YQPA 3HH2C 2NU4I 2V1CC 1CHOI 5HQ8A 2JA1A 2ARPF 1Y1BA 2KMQA 2QQEA 3QTLD 1XBTA 5FUXA 1PCEA 1OVOA 2QQCA 1OMUA 1TBRR 1Y1CA 2LEOA 2XRCA 4OVOA 1UVGA 5FUYA 2SGFI 1DS3I 3E2IA 1XX6A 2KMOA 3B4VC 1BUSA 1MT1A 1PTRA 1RFHA 4A24A 1PJUA 2NU1I 3GOXA 3E59A 2KMPA 5JHWC 2K9HA 2P6AC 1V1HA 2GKTI 1CSOI 1YTPA 2E73A 1KMAA 1YU6C 4L9MA 2B0UC 1FYBA 1XA6A 2F3CI 2JZMA 2JXDA 1TUSA 2VRWB 1N13A 2KMRA 2ROWA 2QQDA 1W4RA 2ODDA 1SGRI 1U5KA 1LR8A 1CGII 1TURA 3RU0A 2A20A 2OVOA 3OXFA 2JYYA 1LR9A 1R79A 1M8BA 1UVFA 2V1CA 5CCLA 2FNFX 4FKDA 3MEKA 3OVOA 2NU2I 2ENNA 1FAQA 2NU0I 2ORVA 2SGEI 3QWPA 2DIPA 2M5XA 5EX0A 2WCYA 1DS2I 4E1PA 1IY6A 2SGQI 3VDUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WVJ A;  4L9M A;  5FUW A;  1XA6 A;  2ELI A;  3KY9 A;  1PTQ A;  2B8T A;  2JA1 A;  2QQE A;  5FUV A;  1XBT A;  2VRW B;  4UXJ A;  2J87 A;  4UXH A;  2ORW A;  5FUX A;  1KBF A;  3UGI A;  2ROW A;  2ENZ A;  1Y8F A;  1W4R A;  1KBE A;  1FAR A;  2GVI A;  3UGL A;  5FUY A;  2YUU A;  2QPO A;  3E2I A;  3UGD A;  4B6D A;  1XX6 A;  1TBN A;  1R79 A;  3UEY A;  1PTR A;  3UEJ A;  1RFH A;  2FNF X;  4FKD A;  3BJI A;  3CXL A;  2DB6 A;  2ENN A;  4UXI A;  1FAQ A;  2UZ3 A;  2ORV A;  2QQ0 A;  2E73 A;  2J9R A;  1TBO A;  3UFF A; 
#chains in the Genus database with same CATH topology
 1CT0 I;  3SGB I;  2WVJ A;  1NUB A;  2CJS C;  5FUW A;  2CWF A;  3R5A A;  3SEK C;  2ELI A;  2RIJ A;  1PTQ A;  2GKR I;  2B8T A;  3OXG A;  3R5B A;  4HGU A;  1WKX A;  5FUV A;  2WGC A;  4UXJ A;  1VDD A;  3VDP A;  2ORW A;  4GI3 C;  1M8C A;  2L7X A;  1SGP I;  1Y8F A;  1KBE A;  3TO7 A;  1IY5 A;  4WP4 A;  1X4S A;  1HJA I;  2QPO A;  1ULN A;  2Y0M A;  1TBN A;  4SGB I;  1CT4 I;  2ERW A;  3SGQ I;  3UEY A;  2DKV A;  3UEJ A;  1HEV A;  2N1A B;  2N52 A;  5E3R A;  7WGA A;  1WGT A;  1HPT A;  1R0R I;  2W0T A;  2E5R A;  1TOT A;  3FSX A;  3TOA A;  4E1R A;  2LUY A;  4UXI A;  1TGS I;  3D00 A;  5DAE A;  5HI7 A;  1BMO A;  1IW4 A;  2SGP I;  4JCV E;  9WGA A;  1LR7 A;  2L8E A;  1NXU A;  1TBO A;  2LB7 A;  1SGY I;  1UUC A;  2X3T A;  3R5C A;  5J8C A;  1OYV I;  1TIH A;  1Z2I A;  3KY9 A;  2OD1 A;  2V53 A;  2J87 A;  4UXH A;  1K7T A;  1KBF A;  3OL0 A;  3UGI A;  2ENZ A;  5CCL A;  2CWH A;  1CT2 I;  1FAR A;  3FSY A;  1V1I A;  2GVI A;  3TJQ A;  3UGL A;  1TBQ R;  5J8F A;  1H0Z A;  2YUU A;  1SGN I;  2OU2 A;  3UGD A;  4B6D A;  1WGC A;  5EX3 A;  3UOE A;  1HDL A;  2JW6 A;  1SGD I;  5CCM A;  2NU3 I;  3OXL A;  1FY7 A;  1OMT A;  2N71 A;  2UVO A;  2X52 A;  3BJI A;  3CXL A;  2BUS A;  3PDN A;  1CE3 A;  2DB6 A;  1W3S A;  2UZ3 A;  2GIV A;  1PPF I;  2QQ0 A;  5E3P A;  1SGQ I;  2J9R A;  2N17 A;  2SGD I;  3QAH A;  2GKV A;  3VE5 A;  3FC3 A;  3UFF A;  1SGE I;  1X74 A;  1Z7K B;  1CGJ I;  1AN1 I;  2KCX A;  2YQP A;  3HH2 C;  2NU4 I;  3TO6 A;  1Q9B A;  2V1C C;  1CHO I;  2OZU A;  5HQ8 A;  2JA1 A;  2ARP F;  1Y1B A;  2KMQ A;  2QQE A;  3QTL D;  1XBT A;  5FUX A;  1PCE A;  1OVO A;  1K7V A;  2QQC A;  1OMU A;  1TBR R;  4MPI A;  1Y1C A;  2LEO A;  2XRC A;  4OVO A;  1UVG A;  5FUY A;  2SGF I;  1DS3 I;  3E2I A;  1S20 A;  1XX6 A;  2CWG A;  2KMO A;  3B4V C;  1BUS A;  1MT1 A;  1PTR A;  1RFH A;  4A24 A;  1PJU A;  2NU1 I;  3GOX A;  3E59 A;  1UHA A;  2KMP A;  5JHW C;  2K9H A;  2P6A C;  1V1H A;  2GKT I;  1CSO I;  1YTP A;  3TOB A;  2E73 A;  1KMA A;  1YU6 C;  4L9M A;  2B0U C;  1FYB A;  3TO9 A;  1XA6 A;  2F3C I;  2JZM A;  2JXD A;  1TUS A;  1MJB A;  2VRW B;  1N13 A;  4AML A;  2KMR A;  1MJA A;  2ROW A;  5E3Q A;  2QQD A;  1W4R A;  2ODD A;  2PQ8 A;  1SGR I;  1P9Z A;  1CGI I;  1LR8 A;  1TUR A;  1U5K A;  2A20 A;  3RU0 A;  2RC4 A;  2OVO A;  3OXF A;  2JYY A;  1ULM A;  1UVF A;  1LR9 A;  1R79 A;  1M8B A;  1K7U A;  2FNF X;  2V1C A;  1P9G A;  1ULK A;  4FKD A;  3MEK A;  3OVO A;  2NU2 I;  2ENN A;  1FAQ A;  3R5D A;  2NU0 I;  2ORV A;  2SGE I;  1WTJ A;  3QWP A;  2DIP A;  2M5X A;  5EX0 A;  2WCY A;  1DS2 I;  4DNC A;  4E1P A;  1MJ9 A;  1IY6 A;  2SGQ I;  3VDU A; 
#chains in the Genus database with same CATH homology
 1CT0 I;  3SGB I;  2WVJ A;  1NUB A;  2CJS C;  5FUW A;  3SEK C;  2ELI A;  3OXG A;  1PTQ A;  2GKR I;  2B8T A;  4HGU A;  5FUV A;  4UXJ A;  1VDD A;  3VDP A;  2ORW A;  4GI3 C;  1M8C A;  2L7X A;  1SGP I;  1Y8F A;  1KBE A;  1IY5 A;  1X4S A;  1HJA I;  2QPO A;  1TBN A;  4SGB I;  1CT4 I;  2ERW A;  3SGQ I;  3UEY A;  3UEJ A;  2N1A B;  2N52 A;  2W0T A;  1HPT A;  1R0R I;  4E1R A;  2E5R A;  1TOT A;  2LUY A;  4UXI A;  1TGS I;  3D00 A;  5DAE A;  5HI7 A;  1BMO A;  1IW4 A;  2SGP I;  4JCV E;  1LR7 A;  2L8E A;  1TBO A;  1SGY I;  1UUC A;  1OYV I;  1TIH A;  3KY9 A;  2OD1 A;  2V53 A;  2J87 A;  4UXH A;  1KBF A;  3OL0 A;  3UGI A;  2ENZ A;  1CT2 I;  1FAR A;  1V1I A;  2GVI A;  3TJQ A;  3UGL A;  1TBQ R;  1H0Z A;  2YUU A;  1SGN I;  3UGD A;  4B6D A;  5EX3 A;  1HDL A;  2JW6 A;  1SGD I;  5CCM A;  2NU3 I;  3OXL A;  1OMT A;  2N71 A;  3BJI A;  3CXL A;  2BUS A;  3PDN A;  1CE3 A;  2DB6 A;  1W3S A;  2UZ3 A;  1PPF I;  2QQ0 A;  1SGQ I;  2J9R A;  2N17 A;  2SGD I;  3VE5 A;  2GKV A;  3FC3 A;  3UFF A;  1Z7K B;  1SGE I;  1X74 A;  1CGJ I;  1AN1 I;  2KCX A;  2YQP A;  3HH2 C;  2NU4 I;  2V1C C;  1CHO I;  5HQ8 A;  2JA1 A;  2ARP F;  1Y1B A;  2KMQ A;  2QQE A;  3QTL D;  1XBT A;  5FUX A;  1PCE A;  1OVO A;  2QQC A;  1OMU A;  1TBR R;  1Y1C A;  2LEO A;  2XRC A;  4OVO A;  1UVG A;  5FUY A;  2SGF I;  1DS3 I;  3E2I A;  1XX6 A;  2KMO A;  3B4V C;  1BUS A;  1MT1 A;  1PTR A;  1RFH A;  4A24 A;  1PJU A;  2NU1 I;  3GOX A;  3E59 A;  2KMP A;  5JHW C;  2K9H A;  2P6A C;  1V1H A;  2GKT I;  1CSO I;  1YTP A;  2E73 A;  1KMA A;  1YU6 C;  4L9M A;  2B0U C;  1FYB A;  1XA6 A;  2F3C I;  2JZM A;  2JXD A;  1TUS A;  2VRW B;  1N13 A;  2KMR A;  2ROW A;  2QQD A;  1W4R A;  2ODD A;  1SGR I;  1U5K A;  1LR8 A;  1CGI I;  1TUR A;  3RU0 A;  2A20 A;  2OVO A;  3OXF A;  2JYY A;  1LR9 A;  1R79 A;  1M8B A;  1UVF A;  2V1C A;  5CCL A;  2FNF X;  4FKD A;  3MEK A;  3OVO A;  2NU2 I;  2ENN A;  1FAQ A;  2NU0 I;  2ORV A;  2SGE I;  3QWP A;  2DIP A;  2M5X A;  5EX0 A;  2WCY A;  1DS2 I;  4E1P A;  1IY6 A;  2SGQ I;  3VDU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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