2DIPA

Solution structure of the zz domain of zinc finger swim domain containing protein 2
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
98
structure length
98
Chain Sequence
GSSGSSGLEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRNQKWRSLEKRADEVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Zinc finger SWIM domain-containing protein 2
publication title Solution structure of the ZZ domain of Zinc finger SWIM domain containing protein 2
rcsb
source organism Homo sapiens
total genus 8
structure length 98
sequence length 98
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2006-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00569 ZZ Zinc finger, ZZ type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.90 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2dipA01
2DIPA 1TOTA 2N1AB 2E5RA
chains in the Genus database with same CATH superfamily
2WGCA 1CE3A 2QQEA 1LR8A 1DS2I 1KMAA 3SGQI 3E59A 2OZUA 2LB7A 1TURA 1V1IA 2ORWA 3TO7A 1P9GA 3OL0A 1NXUA 5HQ8A 1HDLA 1ULMA 1V1HA 2LUYA 2GIVA 1DS3I 2KMOA 3UEJA 2E73A 2ELIA 2SGPI 2FNFX 3UGIA 1TOTA 2CJSC 3OXLA 1Y8FA 2CWFA 1NUBA 3R5BA 1HPTA 1MJBA 2ENNA 1OVOA 1UHAA 1WGCA 1R0RI 4JCVE 2J87A 2A20A 1KBFA 1KBEA 2M5XA 2XRCA 3OXFA 5JHWC 1SGRI 4DNCA 5CCMA 1FYBA 1W3SA 2ODDA 2W0TA 1PPFI 3MEKA 4FKDA 5HI7A 2QQDA 2V1CA 1N13A 1CT0I 3FSYA 1TGSI 1FY7A 1M8BA 2B0UC 3D00A 7WGAA 1X74A 5FUVA 1IY6A 3UGLA 2OU2A 3VDPA 1U5KA 1Y1CA 2K9HA 4UXHA 4WP4A 2B8TA 1FAQA 2DIPA 1X4SA 2GKRI 1LR7A 3OVOA 5J8FA 4MPIA 5E3RA 2SGFI 5EX3A 1K7TA 2DKVA 2X52A 2CWGA 4A24A 1CT2I 1UVGA 2VRWB 5EX0A 1BUSA 1ULKA 3FSXA 1P9ZA 3UEYA 5CCLA 2P6AC 2L7XA 4UXJA 1K7UA 1IY5A 4GI3C 1SGEI 4L9MA 3UFFA 1TBRR 1SGQI 1YTPA 3HH2C 2NU1I 2KMRA 3SGBI 2ARPF 4OVOA 1PJUA 1MJAA 2KMQA 2N71A 1TBOA 1BMOA 2J9RA 2NU0I 5FUXA 3GOXA 5J8CA 1IW4A 2OD1A 1LR9A 4AMLA 2X3TA 2QPOA 1Q9BA 3QWPA 1XA6A 1UUCA 1OMTA 2Y0MA 4UXIA 3TJQA 2RC4A 1Y1BA 5FUYA 1HJAI 3UGDA 2ROWA 2WVJA 3VE5A 2QQ0A 3BJIA 1TBQR 2N52A 4E1RA 2F3CI 2JA1A 9WGAA 1CT4I 1H0ZA 1R79A 1Z2IA 2NU3I 3SEKC 1RFHA 2NU4I 1TIHA 2GVIA 5E3QA 1PCEA 2KCXA 1AN1I 3TO6A 3UOEA 2YUUA 2DB6A 1UVFA 3VDUA 1ULNA 1PTQA 3KY9A 2SGDI 1YU6C 3E2IA 3B4VC 3QTLD 1HEVA 2JW6A 3R5AA 4SGBI 2GKVA 1WKXA 3QAHA 3CXLA 1W4RA 2V1CC 3PDNA 1PTRA 2GKTI 2PQ8A 2ERWA 2SGQI 3R5CA 3FC3A 2NU2I 2QQCA 1CHOI 1SGNI 4HGUA 5DAEA 2KMPA 2JYYA 1SGPI 2N1AB 2OVOA 3RU0A 2YQPA 5E3PA 1K7VA 1OYVI 2RIJA 2JZMA 1CSOI 3TOAA 4B6DA 1MT1A 1XX6A 1Z7KB 2UZ3A 2BUSA 1MJ9A 1WGTA 1FARA 2V53A 3OXGA 1VDDA 2LEOA 2SGEI 2WCYA 3TOBA 1M8CA 1XBTA 2E5RA 2JXDA 1WTJA 2L8EA 4E1PA 2ORVA 1S20A 2N17A 3TO9A 1OMUA 1SGYI 1TUSA 1SGDI 3R5DA 1CGJI 2CWHA 5FUWA 1TBNA 1CGII 2ENZA 2UVOA
chains in the Genus database with same CATH topology
1CE3A 2QQEA 1LR8A 1DS2I 1KMAA 3SGQI 3E59A 5HQ8A 1TURA 1V1IA 2ORWA 3OL0A 1HDLA 1V1HA 2LUYA 3UEJA 1DS3I 2KMOA 2E73A 2ELIA 2SGPI 2FNFX 3UGIA 1TOTA 2CJSC 3OXLA 1Y8FA 1NUBA 1HPTA 2ENNA 1OVOA 1R0RI 4JCVE 2J87A 2A20A 1KBFA 1KBEA 2M5XA 2XRCA 3OXFA 5JHWC 1SGRI 1FYBA 5CCMA 1W3SA 2ODDA 2W0TA 1PPFI 3MEKA 4FKDA 5HI7A 2QQDA 2V1CA 1N13A 1CT0I 1TGSI 1M8BA 2B0UC 3D00A 1X74A 5FUVA 1IY6A 3UGLA 3VDPA 1U5KA 1Y1CA 2K9HA 4UXHA 2B8TA 1FAQA 2DIPA 1X4SA 2GKRI 1LR7A 3OVOA 2SGFI 5EX3A 4A24A 1CT2I 1UVGA 2VRWB 5EX0A 1BUSA 3UEYA 5CCLA 2P6AC 2L7XA 4UXJA 1IY5A 4GI3C 1SGEI 4L9MA 3UFFA 1TBRR 1SGQI 1YTPA 3HH2C 2NU1I 2KMRA 3SGBI 2ARPF 4OVOA 1PJUA 2KMQA 2N71A 1TBOA 1BMOA 2J9RA 2NU0I 5FUXA 3GOXA 1IW4A 2OD1A 1LR9A 2QPOA 3QWPA 1XA6A 1UUCA 1OMTA 4UXIA 3TJQA 1Y1BA 5FUYA 1HJAI 3UGDA 2ROWA 2WVJA 3VE5A 2QQ0A 3BJIA 1TBQR 2N52A 4E1RA 2F3CI 2JA1A 1CT4I 1H0ZA 1R79A 2NU3I 3SEKC 1RFHA 2NU4I 1TIHA 2GVIA 1PCEA 2KCXA 1AN1I 2YUUA 2DB6A 1UVFA 3VDUA 1PTQA 3KY9A 2SGDI 1YU6C 3E2IA 3B4VC 3QTLD 2JW6A 4SGBI 2GKVA 3CXLA 1W4RA 2V1CC 3PDNA 1PTRA 2GKTI 2SGQI 2ERWA 3FC3A 2NU2I 2QQCA 1CHOI 1SGNI 4HGUA 5DAEA 2KMPA 2JYYA 1SGPI 2N1AB 2OVOA 3RU0A 2YQPA 1OYVI 2JZMA 1CSOI 4B6DA 1MT1A 1XX6A 1Z7KB 2UZ3A 2BUSA 1FARA 2V53A 3OXGA 1VDDA 2LEOA 2SGEI 2WCYA 1M8CA 1XBTA 2E5RA 2JXDA 2L8EA 4E1PA 2ORVA 2N17A 1OMUA 1SGYI 1TUSA 1SGDI 1CGJI 5FUWA 1TBNA 1CGII 2ENZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DIP A;  1TOT A;  2N1A B;  2E5R A; 
#chains in the Genus database with same CATH topology
 2WGC A;  1CE3 A;  2QQE A;  1LR8 A;  1DS2 I;  1KMA A;  3SGQ I;  3E59 A;  2OZU A;  2LB7 A;  1TUR A;  1V1I A;  2ORW A;  3TO7 A;  1P9G A;  3OL0 A;  1NXU A;  5HQ8 A;  1HDL A;  1ULM A;  1V1H A;  2LUY A;  2GIV A;  1DS3 I;  2KMO A;  3UEJ A;  2E73 A;  2ELI A;  2SGP I;  2FNF X;  3UGI A;  1TOT A;  2CJS C;  3OXL A;  1Y8F A;  2CWF A;  1NUB A;  3R5B A;  1HPT A;  1MJB A;  2ENN A;  1OVO A;  1UHA A;  1WGC A;  1R0R I;  4JCV E;  2J87 A;  2A20 A;  1KBF A;  1KBE A;  2M5X A;  2XRC A;  3OXF A;  5JHW C;  1SGR I;  4DNC A;  5CCM A;  1FYB A;  1W3S A;  2ODD A;  2W0T A;  1PPF I;  3MEK A;  4FKD A;  5HI7 A;  2QQD A;  2V1C A;  1N13 A;  1CT0 I;  3FSY A;  1TGS I;  1FY7 A;  1M8B A;  2B0U C;  3D00 A;  7WGA A;  1X74 A;  5FUV A;  1IY6 A;  3UGL A;  2OU2 A;  3VDP A;  1U5K A;  1Y1C A;  2K9H A;  4UXH A;  4WP4 A;  2B8T A;  1FAQ A;  2DIP A;  1X4S A;  2GKR I;  1LR7 A;  3OVO A;  5J8F A;  4MPI A;  5E3R A;  2SGF I;  5EX3 A;  1K7T A;  2DKV A;  2X52 A;  2CWG A;  4A24 A;  1CT2 I;  1UVG A;  2VRW B;  5EX0 A;  1BUS A;  1ULK A;  3FSX A;  1P9Z A;  3UEY A;  5CCL A;  2P6A C;  2L7X A;  4UXJ A;  1K7U A;  1IY5 A;  4GI3 C;  1SGE I;  4L9M A;  3UFF A;  1TBR R;  1SGQ I;  1YTP A;  3HH2 C;  2NU1 I;  2KMR A;  3SGB I;  2ARP F;  4OVO A;  1PJU A;  1MJA A;  2KMQ A;  2N71 A;  1TBO A;  1BMO A;  2J9R A;  2NU0 I;  5FUX A;  3GOX A;  5J8C A;  1IW4 A;  2OD1 A;  1LR9 A;  4AML A;  2X3T A;  2QPO A;  1Q9B A;  3QWP A;  1XA6 A;  1UUC A;  1OMT A;  2Y0M A;  4UXI A;  3TJQ A;  2RC4 A;  1Y1B A;  5FUY A;  1HJA I;  3UGD A;  2ROW A;  2WVJ A;  3VE5 A;  2QQ0 A;  3BJI A;  1TBQ R;  2N52 A;  4E1R A;  2F3C I;  2JA1 A;  9WGA A;  1CT4 I;  1H0Z A;  1R79 A;  1Z2I A;  2NU3 I;  3SEK C;  1RFH A;  2NU4 I;  1TIH A;  2GVI A;  5E3Q A;  1PCE A;  2KCX A;  1AN1 I;  3TO6 A;  3UOE A;  2YUU A;  2DB6 A;  1UVF A;  3VDU A;  1ULN A;  1PTQ A;  3KY9 A;  2SGD I;  1YU6 C;  3E2I A;  3B4V C;  3QTL D;  1HEV A;  2JW6 A;  3R5A A;  4SGB I;  2GKV A;  1WKX A;  3QAH A;  3CXL A;  1W4R A;  2V1C C;  3PDN A;  1PTR A;  2GKT I;  2PQ8 A;  2ERW A;  2SGQ I;  3R5C A;  3FC3 A;  2NU2 I;  2QQC A;  1CHO I;  1SGN I;  4HGU A;  5DAE A;  2KMP A;  2JYY A;  1SGP I;  2N1A B;  2OVO A;  3RU0 A;  2YQP A;  5E3P A;  1K7V A;  1OYV I;  2RIJ A;  2JZM A;  1CSO I;  3TOA A;  4B6D A;  1MT1 A;  1XX6 A;  1Z7K B;  2UZ3 A;  2BUS A;  1MJ9 A;  1WGT A;  1FAR A;  2V53 A;  3OXG A;  1VDD A;  2LEO A;  2SGE I;  2WCY A;  3TOB A;  1M8C A;  1XBT A;  2E5R A;  2JXD A;  1WTJ A;  2L8E A;  4E1P A;  2ORV A;  1S20 A;  2N17 A;  3TO9 A;  1OMU A;  1SGY I;  1TUS A;  1SGD I;  3R5D A;  1CGJ I;  2CWH A;  5FUW A;  1TBN A;  1CGI I;  2ENZ A;  2UVO A; 
#chains in the Genus database with same CATH homology
 1CE3 A;  2QQE A;  1LR8 A;  1DS2 I;  1KMA A;  3SGQ I;  3E59 A;  5HQ8 A;  1TUR A;  1V1I A;  2ORW A;  3OL0 A;  1HDL A;  1V1H A;  2LUY A;  3UEJ A;  1DS3 I;  2KMO A;  2E73 A;  2ELI A;  2SGP I;  2FNF X;  3UGI A;  1TOT A;  2CJS C;  3OXL A;  1Y8F A;  1NUB A;  1HPT A;  2ENN A;  1OVO A;  1R0R I;  4JCV E;  2J87 A;  2A20 A;  1KBF A;  1KBE A;  2M5X A;  2XRC A;  3OXF A;  5JHW C;  1SGR I;  1FYB A;  5CCM A;  1W3S A;  2ODD A;  2W0T A;  1PPF I;  3MEK A;  4FKD A;  5HI7 A;  2QQD A;  2V1C A;  1N13 A;  1CT0 I;  1TGS I;  1M8B A;  2B0U C;  3D00 A;  1X74 A;  5FUV A;  1IY6 A;  3UGL A;  3VDP A;  1U5K A;  1Y1C A;  2K9H A;  4UXH A;  2B8T A;  1FAQ A;  2DIP A;  1X4S A;  2GKR I;  1LR7 A;  3OVO A;  2SGF I;  5EX3 A;  4A24 A;  1CT2 I;  1UVG A;  2VRW B;  5EX0 A;  1BUS A;  3UEY A;  5CCL A;  2P6A C;  2L7X A;  4UXJ A;  1IY5 A;  4GI3 C;  1SGE I;  4L9M A;  3UFF A;  1TBR R;  1SGQ I;  1YTP A;  3HH2 C;  2NU1 I;  2KMR A;  3SGB I;  2ARP F;  4OVO A;  1PJU A;  2KMQ A;  2N71 A;  1TBO A;  1BMO A;  2J9R A;  2NU0 I;  5FUX A;  3GOX A;  1IW4 A;  2OD1 A;  1LR9 A;  2QPO A;  3QWP A;  1XA6 A;  1UUC A;  1OMT A;  4UXI A;  3TJQ A;  1Y1B A;  5FUY A;  1HJA I;  3UGD A;  2ROW A;  2WVJ A;  3VE5 A;  2QQ0 A;  3BJI A;  1TBQ R;  2N52 A;  4E1R A;  2F3C I;  2JA1 A;  1CT4 I;  1H0Z A;  1R79 A;  2NU3 I;  3SEK C;  1RFH A;  2NU4 I;  1TIH A;  2GVI A;  1PCE A;  2KCX A;  1AN1 I;  2YUU A;  2DB6 A;  1UVF A;  3VDU A;  1PTQ A;  3KY9 A;  2SGD I;  1YU6 C;  3E2I A;  3B4V C;  3QTL D;  2JW6 A;  4SGB I;  2GKV A;  3CXL A;  1W4R A;  2V1C C;  3PDN A;  1PTR A;  2GKT I;  2SGQ I;  2ERW A;  3FC3 A;  2NU2 I;  2QQC A;  1CHO I;  1SGN I;  4HGU A;  5DAE A;  2KMP A;  2JYY A;  1SGP I;  2N1A B;  2OVO A;  3RU0 A;  2YQP A;  1OYV I;  2JZM A;  1CSO I;  4B6D A;  1MT1 A;  1XX6 A;  1Z7K B;  2UZ3 A;  2BUS A;  1FAR A;  2V53 A;  3OXG A;  1VDD A;  2LEO A;  2SGE I;  2WCY A;  1M8C A;  1XBT A;  2E5R A;  2JXD A;  2L8E A;  4E1P A;  2ORV A;  2N17 A;  1OMU A;  1SGY I;  1TUS A;  1SGD I;  1CGJ I;  5FUW A;  1TBN A;  1CGI I;  2ENZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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