2NU3I

Accommodation of positively-charged residues in a hydrophobic specificity pocket: crystal structures of sgpb in complex with omtky3 variants lys18i and arg18i
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTKEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Streptogrisin B, Proteinase B
publication title Accommodation of positively-charged residues in a hydrophobic specificity pocket: Crystal structures of SGPB in complex with OMTKY3 variants Lys18I and Arg18I
rcsb
source organism Meleagris gallopavo
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2006-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2nu3I00
1UUCA 1BUSA 1HPTA 1SGDI 1BMOA 4OVOA 1OVOA 2SGQI 1KMAA 1TGSI 5DAEA 2JZMA 2OVOA 1LR9A 2BUSA 1SGPI 1AN1I 1LR7A 3SGBI 1N13A 1IW4A 4SGBI 1CT2I 2NU4I 2KMPA 1CGJI 1TBQR 1CT4I 1OMTA 1CHOI 3HH2C 1MT1A 2JXDA 1SGYI 2SGEI 1M8BA 1LR8A 1OMUA 1Z7KB 2NU2I 3OVOA 1IY5A 1HDLA 1YTPA 2SGFI 2SGDI 2N52A 1TURA 1CGII 1IY6A 1OYVI 1PCEA 2NU0I 1YU6C 1PJUA 1CE3A 3QTLD 1CT0I 2QQCA 1TIHA 1DS3I 1FYBA 2GKRI 3B4VC 4HGUA 3SEKC 1HJAI 5JHWC 2KCXA 1DS2I 1M8CA 2KMRA 4GI3C 2ERWA 3SGQI 2N71A 2P6AC 3TJQA 1SGEI 1UVFA 1R0RI 2B0UC 1NUBA 2NU1I 2SGPI 1Y1CA 2WCYA 2LEOA 1SGRI 1TUSA 1SGQI 2KMOA 2ARPF 2GKTI 2V53A 1Y1BA 2QQDA 2NU3I 2F3CI 1CSOI 1PPFI 1TBRR 1UVGA 2GKVA 1SGNI 2N17A 1H0ZA 2XRCA 2M5XA 2KMQA 2JYYA
chains in the Genus database with same CATH superfamily
1UUCA 1BUSA 1HPTA 1PTRA 1BMOA 1SGDI 1XA6A 1OVOA 2N1AB 2UVOA 4OVOA 5HQ8A 1FAQA 1K7UA 5J8CA 1MJBA 5EX0A 4A24A 2YQPA 2L7XA 2CJSC 3FSXA 2QQ0A 1PTQA 5FUXA 2CWFA 2SGQI 3FSYA 4UXIA 1XX6A 2WVJA 5EX3A 1KMAA 1TGSI 2LB7A 2A20A 5DAEA 3CXLA 3R5AA 1Q9BA 5J8FA 4E1PA 1TBOA 2JZMA 1FY7A 2OVOA 1LR9A 2BUSA 1P9ZA 1SGPI 1Z2IA 1AN1I 1K7VA 1TBNA 5CCLA 3UOEA 1LR7A 2DB6A 3QWPA 3SGBI 1N13A 5E3QA 3UFFA 7WGAA 1IW4A 2ENNA 4SGBI 1CT2I 1MJAA 2NU4I 2KMPA 2FNFX 3TO9A 1CGJI 1TBQR 1CT4I 3MEKA 3QAHA 1OMTA 1CHOI 3HH2C 2ELIA 1MT1A 2X3TA 3UGLA 2JXDA 4E1RA 1SGYI 2ENZA 2LUYA 2SGEI 1M8BA 1TOTA 3GOXA 1LR8A 1OMUA 2CWHA 2Y0MA 4L9MA 1Y8FA 1V1IA 1Z7KB 2NU2I 3OVOA 1IY5A 1HDLA 1P9GA 2UZ3A 1K7TA 1YTPA 2B8TA 2SGFI 1W3SA 1MJ9A 1VDDA 2N52A 1R79A 2SGDI 2W0TA 2V1CC 2E5RA 5E3RA 3OXFA 2V1CA 4FKDA 2K9HA 3UEJA 1TURA 1CGII 1IY6A 2RC4A 2QQEA 3VE5A 2ROWA 1ULKA 1OYVI 1PCEA 1U5KA 2WGCA 4JCVE 2NU0I 3VDPA 3R5BA 1YU6C 1PJUA 1CE3A 1V1HA 3QTLD 1CT0I 1NXUA 3R5DA 2E73A 2PQ8A 3FC3A 1KBFA 1X4SA 2QQCA 2YUUA 2OD1A 1W4RA 1XBTA 4UXHA 1TIHA 1DS3I 5FUWA 1FYBA 2DIPA 1UHAA 2GKRI 3D00A 1ULNA 3TO6A 2JA1A 3E59A 3VDUA 1S20A 3KY9A 3B4VC 2VRWB 3TOBA 4HGUA 2GIVA 1HJAI 2RIJA 3SEKC 4AMLA 3TO7A 1WKXA 2KCXA 2OU2A 2OZUA 5JHWC 1DS2I 1M8CA 2KMRA 1WGCA 5CCMA 4UXJA 1FARA 5E3PA 4GI3C 1ULMA 2ERWA 4MPIA 3SGQI 2ODDA 2N71A 1RFHA 2P6AC 2DKVA 2QPOA 3TJQA 5HI7A 1WTJA 1SGEI 1UVFA 1R0RI 2B0UC 1NUBA 2NU1I 4B6DA 1HEVA 1WGTA 2SGPI 2X52A 1Y1CA 2WCYA 2LEOA 3R5CA 1SGRI 1TUSA 2JW6A 1SGQI 2J9RA 2KMOA 2ARPF 2GKTI 2V53A 1X74A 3TOAA 3UGIA 1Y1BA 2L8EA 2ORWA 2QQDA 5FUVA 2NU3I 4WP4A 2F3CI 1CSOI 3UGDA 1PPFI 1TBRR 1KBEA 1UVGA 3OXLA 5FUYA 2GKVA 3E2IA 3UEYA 2ORVA 3OXGA 4DNCA 1SGNI 2N17A 1H0ZA 3BJIA 9WGAA 3RU0A 2GVIA 3PDNA 3OL0A 2XRCA 2M5XA 2KMQA 2CWGA 2JYYA 2J87A
chains in the Genus database with same CATH topology
1UUCA 1BUSA 1HPTA 1PTRA 1BMOA 1XA6A 1SGDI 1OVOA 2N1AB 4OVOA 5HQ8A 1FAQA 5EX0A 4A24A 2YQPA 2L7XA 2CJSC 2QQ0A 1PTQA 5FUXA 2SGQI 4UXIA 1XX6A 2WVJA 5EX3A 1KMAA 1TGSI 2A20A 5DAEA 3CXLA 4E1PA 1TBOA 2JZMA 2OVOA 5CCLA 1LR9A 2BUSA 1SGPI 1AN1I 1TBNA 1LR7A 2DB6A 3QWPA 3SGBI 1N13A 3UFFA 1IW4A 2ENNA 4SGBI 1CT2I 2NU4I 2KMPA 2FNFX 1CGJI 1TBQR 1CT4I 3MEKA 1OMTA 1CHOI 3HH2C 2ELIA 1MT1A 3UGLA 2JXDA 4E1RA 1SGYI 2ENZA 2LUYA 2SGEI 1M8BA 1TOTA 3GOXA 1LR8A 1OMUA 4L9MA 1Y8FA 1V1IA 1Z7KB 2NU2I 3OVOA 1IY5A 1HDLA 2UZ3A 1YTPA 2B8TA 2SGFI 1W3SA 1VDDA 2N52A 1R79A 2SGDI 2W0TA 2V1CC 2E5RA 3OXFA 2V1CA 4FKDA 2K9HA 3UEJA 1TURA 1CGII 1IY6A 2QQEA 3VE5A 2ROWA 1OYVI 1PCEA 1U5KA 4JCVE 2NU0I 3VDPA 1YU6C 1PJUA 1CE3A 1V1HA 3QTLD 1CT0I 2E73A 3FC3A 1KBFA 1X4SA 2QQCA 2YUUA 2OD1A 1W4RA 1XBTA 4UXHA 1TIHA 1DS3I 5FUWA 1FYBA 2DIPA 2GKRI 3D00A 2JA1A 3E59A 3VDUA 3KY9A 3B4VC 2VRWB 4HGUA 3SEKC 1HJAI 5JHWC 2KCXA 1DS2I 1M8CA 2KMRA 5CCMA 4UXJA 1FARA 4GI3C 2ERWA 3SGQI 2ODDA 2N71A 1RFHA 2P6AC 2QPOA 3TJQA 5HI7A 1SGEI 1UVFA 1R0RI 2B0UC 1NUBA 2NU1I 4B6DA 2SGPI 1Y1CA 2WCYA 2LEOA 1SGRI 1TUSA 2JW6A 1SGQI 2J9RA 2KMOA 2ARPF 2GKTI 2V53A 1X74A 3UGIA 1Y1BA 2L8EA 2ORWA 2QQDA 5FUVA 2NU3I 3UGDA 2F3CI 1CSOI 1PPFI 1TBRR 1KBEA 1UVGA 3OXLA 5FUYA 2GKVA 3E2IA 3UEYA 2ORVA 3OXGA 1SGNI 2N17A 1H0ZA 3BJIA 3RU0A 2GVIA 3PDNA 3OL0A 2XRCA 2M5XA 2KMQA 2JYYA 2J87A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UUC A;  1BUS A;  1HPT A;  1SGD I;  1BMO A;  4OVO A;  1OVO A;  2SGQ I;  1KMA A;  1TGS I;  5DAE A;  2JZM A;  2OVO A;  1LR9 A;  2BUS A;  1SGP I;  1AN1 I;  1LR7 A;  3SGB I;  1N13 A;  1IW4 A;  4SGB I;  1CT2 I;  2NU4 I;  2KMP A;  1CGJ I;  1TBQ R;  1CT4 I;  1OMT A;  1CHO I;  3HH2 C;  1MT1 A;  2JXD A;  1SGY I;  2SGE I;  1M8B A;  1LR8 A;  1OMU A;  1Z7K B;  2NU2 I;  3OVO A;  1IY5 A;  1HDL A;  1YTP A;  2SGF I;  2SGD I;  2N52 A;  1TUR A;  1CGI I;  1IY6 A;  1OYV I;  1PCE A;  2NU0 I;  1YU6 C;  1PJU A;  1CE3 A;  3QTL D;  1CT0 I;  2QQC A;  1TIH A;  1DS3 I;  1FYB A;  2GKR I;  3B4V C;  4HGU A;  3SEK C;  1HJA I;  5JHW C;  2KCX A;  1DS2 I;  1M8C A;  2KMR A;  4GI3 C;  2ERW A;  3SGQ I;  2N71 A;  2P6A C;  3TJQ A;  1SGE I;  1UVF A;  1R0R I;  2B0U C;  1NUB A;  2NU1 I;  2SGP I;  1Y1C A;  2WCY A;  2LEO A;  1SGR I;  1TUS A;  1SGQ I;  2KMO A;  2ARP F;  2GKT I;  2V53 A;  1Y1B A;  2QQD A;  2NU3 I;  2F3C I;  1CSO I;  1PPF I;  1TBR R;  1UVG A;  2GKV A;  1SGN I;  2N17 A;  1H0Z A;  2XRC A;  2M5X A;  2KMQ A;  2JYY A; 
#chains in the Genus database with same CATH topology
 1UUC A;  1BUS A;  1HPT A;  1PTR A;  1BMO A;  1SGD I;  1XA6 A;  1OVO A;  2N1A B;  2UVO A;  4OVO A;  5HQ8 A;  1FAQ A;  1K7U A;  5J8C A;  1MJB A;  5EX0 A;  4A24 A;  2YQP A;  2L7X A;  2CJS C;  3FSX A;  2QQ0 A;  1PTQ A;  5FUX A;  2CWF A;  2SGQ I;  3FSY A;  4UXI A;  1XX6 A;  2WVJ A;  5EX3 A;  1KMA A;  1TGS I;  2LB7 A;  2A20 A;  5DAE A;  3CXL A;  3R5A A;  1Q9B A;  5J8F A;  4E1P A;  1TBO A;  2JZM A;  1FY7 A;  2OVO A;  1LR9 A;  2BUS A;  1P9Z A;  1SGP I;  1Z2I A;  1AN1 I;  1K7V A;  1TBN A;  5CCL A;  3UOE A;  1LR7 A;  2DB6 A;  3QWP A;  3SGB I;  1N13 A;  5E3Q A;  3UFF A;  7WGA A;  1IW4 A;  2ENN A;  4SGB I;  1CT2 I;  1MJA A;  2NU4 I;  2KMP A;  2FNF X;  3TO9 A;  1CGJ I;  1TBQ R;  1CT4 I;  3MEK A;  3QAH A;  1OMT A;  1CHO I;  3HH2 C;  2ELI A;  1MT1 A;  2X3T A;  3UGL A;  2JXD A;  4E1R A;  1SGY I;  2ENZ A;  2LUY A;  2SGE I;  1M8B A;  1TOT A;  3GOX A;  1LR8 A;  1OMU A;  2CWH A;  2Y0M A;  4L9M A;  1Y8F A;  1V1I A;  1Z7K B;  2NU2 I;  3OVO A;  1IY5 A;  1HDL A;  1P9G A;  2UZ3 A;  1K7T A;  1YTP A;  2B8T A;  2SGF I;  1W3S A;  1MJ9 A;  1VDD A;  2N52 A;  1R79 A;  2SGD I;  2W0T A;  2V1C C;  2E5R A;  5E3R A;  3OXF A;  2V1C A;  4FKD A;  2K9H A;  3UEJ A;  1TUR A;  1CGI I;  1IY6 A;  2RC4 A;  2QQE A;  3VE5 A;  2ROW A;  1ULK A;  1OYV I;  1PCE A;  1U5K A;  2WGC A;  4JCV E;  2NU0 I;  3VDP A;  3R5B A;  1YU6 C;  1PJU A;  1CE3 A;  1V1H A;  3QTL D;  1CT0 I;  1NXU A;  3R5D A;  2E73 A;  2PQ8 A;  3FC3 A;  1KBF A;  1X4S A;  2QQC A;  2YUU A;  2OD1 A;  1W4R A;  1XBT A;  4UXH A;  1TIH A;  1DS3 I;  5FUW A;  1FYB A;  2DIP A;  1UHA A;  2GKR I;  3D00 A;  1ULN A;  3TO6 A;  2JA1 A;  3E59 A;  3VDU A;  1S20 A;  3KY9 A;  3B4V C;  2VRW B;  3TOB A;  4HGU A;  2GIV A;  1HJA I;  2RIJ A;  3SEK C;  4AML A;  3TO7 A;  1WKX A;  2KCX A;  2OU2 A;  2OZU A;  5JHW C;  1DS2 I;  1M8C A;  2KMR A;  1WGC A;  5CCM A;  4UXJ A;  1FAR A;  5E3P A;  4GI3 C;  1ULM A;  2ERW A;  4MPI A;  3SGQ I;  2ODD A;  2N71 A;  1RFH A;  2P6A C;  2DKV A;  2QPO A;  3TJQ A;  5HI7 A;  1WTJ A;  1SGE I;  1UVF A;  1R0R I;  2B0U C;  1NUB A;  2NU1 I;  4B6D A;  1HEV A;  1WGT A;  2SGP I;  2X52 A;  1Y1C A;  2WCY A;  2LEO A;  3R5C A;  1SGR I;  1TUS A;  2JW6 A;  1SGQ I;  2J9R A;  2KMO A;  2ARP F;  2GKT I;  2V53 A;  1X74 A;  3TOA A;  3UGI A;  1Y1B A;  2L8E A;  2ORW A;  2QQD A;  5FUV A;  2NU3 I;  4WP4 A;  2F3C I;  1CSO I;  3UGD A;  1PPF I;  1TBR R;  1KBE A;  1UVG A;  3OXL A;  5FUY A;  2GKV A;  3E2I A;  3UEY A;  2ORV A;  3OXG A;  4DNC A;  1SGN I;  2N17 A;  1H0Z A;  3BJI A;  9WGA A;  3RU0 A;  2GVI A;  3PDN A;  3OL0 A;  2XRC A;  2M5X A;  2KMQ A;  2CWG A;  2JYY A;  2J87 A; 
#chains in the Genus database with same CATH homology
 1UUC A;  1BUS A;  1HPT A;  1PTR A;  1BMO A;  1XA6 A;  1SGD I;  1OVO A;  2N1A B;  4OVO A;  5HQ8 A;  1FAQ A;  5EX0 A;  4A24 A;  2YQP A;  2L7X A;  2CJS C;  2QQ0 A;  1PTQ A;  5FUX A;  2SGQ I;  4UXI A;  1XX6 A;  2WVJ A;  5EX3 A;  1KMA A;  1TGS I;  2A20 A;  5DAE A;  3CXL A;  4E1P A;  1TBO A;  2JZM A;  2OVO A;  5CCL A;  1LR9 A;  2BUS A;  1SGP I;  1AN1 I;  1TBN A;  1LR7 A;  2DB6 A;  3QWP A;  3SGB I;  1N13 A;  3UFF A;  1IW4 A;  2ENN A;  4SGB I;  1CT2 I;  2NU4 I;  2KMP A;  2FNF X;  1CGJ I;  1TBQ R;  1CT4 I;  3MEK A;  1OMT A;  1CHO I;  3HH2 C;  2ELI A;  1MT1 A;  3UGL A;  2JXD A;  4E1R A;  1SGY I;  2ENZ A;  2LUY A;  2SGE I;  1M8B A;  1TOT A;  3GOX A;  1LR8 A;  1OMU A;  4L9M A;  1Y8F A;  1V1I A;  1Z7K B;  2NU2 I;  3OVO A;  1IY5 A;  1HDL A;  2UZ3 A;  1YTP A;  2B8T A;  2SGF I;  1W3S A;  1VDD A;  2N52 A;  1R79 A;  2SGD I;  2W0T A;  2V1C C;  2E5R A;  3OXF A;  2V1C A;  4FKD A;  2K9H A;  3UEJ A;  1TUR A;  1CGI I;  1IY6 A;  2QQE A;  3VE5 A;  2ROW A;  1OYV I;  1PCE A;  1U5K A;  4JCV E;  2NU0 I;  3VDP A;  1YU6 C;  1PJU A;  1CE3 A;  1V1H A;  3QTL D;  1CT0 I;  2E73 A;  3FC3 A;  1KBF A;  1X4S A;  2QQC A;  2YUU A;  2OD1 A;  1W4R A;  1XBT A;  4UXH A;  1TIH A;  1DS3 I;  5FUW A;  1FYB A;  2DIP A;  2GKR I;  3D00 A;  2JA1 A;  3E59 A;  3VDU A;  3KY9 A;  3B4V C;  2VRW B;  4HGU A;  3SEK C;  1HJA I;  5JHW C;  2KCX A;  1DS2 I;  1M8C A;  2KMR A;  5CCM A;  4UXJ A;  1FAR A;  4GI3 C;  2ERW A;  3SGQ I;  2ODD A;  2N71 A;  1RFH A;  2P6A C;  2QPO A;  3TJQ A;  5HI7 A;  1SGE I;  1UVF A;  1R0R I;  2B0U C;  1NUB A;  2NU1 I;  4B6D A;  2SGP I;  1Y1C A;  2WCY A;  2LEO A;  1SGR I;  1TUS A;  2JW6 A;  1SGQ I;  2J9R A;  2KMO A;  2ARP F;  2GKT I;  2V53 A;  1X74 A;  3UGI A;  1Y1B A;  2L8E A;  2ORW A;  2QQD A;  5FUV A;  2NU3 I;  3UGD A;  2F3C I;  1CSO I;  1PPF I;  1TBR R;  1KBE A;  1UVG A;  3OXL A;  5FUY A;  2GKV A;  3E2I A;  3UEY A;  2ORV A;  3OXG A;  1SGN I;  2N17 A;  1H0Z A;  3BJI A;  3RU0 A;  2GVI A;  3PDN A;  3OL0 A;  2XRC A;  2M5X A;  2KMQ A;  2JYY A;  2J87 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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