1K7VA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,6galbeta1,4glc
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords agglutinin isolectin 3
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
total genus 47
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7vA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7vA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7vA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7vA04
1Q9BA 1ULNA 1K7UA 1HEVA 4WP4A 1ULMA 2X52A 2WGCA 2CWGA 1WGCA 2X3TA 2UVOA 1UHAA 7WGAA 1WKXA 1P9GA 1K7TA 4AMLA 1P9ZA 4MPIA 1K7VA 2DKVA 1ULKA 9WGAA 2LB7A 1WGTA
chains in the Genus database with same CATH superfamily
4JCVE 1MJ9A 1Q9BA 2RC4A 2DIPA 3UOEA 1ULNA 1VDDA 2GKTI 2K9HA 2NU1I 2Y0MA 4WP4A 3TO7A 1NUBA 2ENNA 3QAHA 2JYYA 5EX0A 3SEKC 5FUXA 1IY6A 1FYBA 2WGCA 4FKDA 2GVIA 1M8CA 2QQDA 1TBQR 2ARPF 3TO6A 2PQ8A 2KMQA 1V1HA 5E3QA 3E2IA 4OVOA 1AN1I 1Y1BA 5FUVA 1TOTA 2V1CA 3E59A 3R5BA 1CSOI 2J9RA 1P9ZA 3KY9A 1NXUA 2JXDA 4DNCA 1R0RI 2J87A 1K7VA 3OXLA 1OYVI 3OVOA 3OL0A 9WGAA 1SGQI 1N13A 1W3SA 1PCEA 5EX3A 1K7UA 4UXIA 4UXHA 1HEVA 1TBOA 2KCXA 5FUWA 4HGUA 2CWHA 1S20A 1HJAI 2QPOA 3MEKA 1CHOI 2ERWA 5JHWC 1FAQA 2V1CC 2X3TA 2ENZA 2CJSC 1HPTA 1LR8A 2B0UC 1SGNI 4E1PA 3UGLA 3UGIA 2W0TA 2NU2I 3FSYA 3VDPA 1K7TA 1TGSI 2LUYA 1CGII 1TURA 2SGFI 3TOBA 4MPIA 3RU0A 2BUSA 2DKVA 2SGPI 5CCMA 1DS3I 1OVOA 1CT0I 3R5DA 2P6AC 1WGTA 2VRWB 3R5AA 3TOAA 1LR7A 3UEYA 2ORVA 5E3PA 1ULMA 2ORWA 2X52A 2SGEI 1Y8FA 4E1RA 3SGBI 2KMRA 2N52A 1PPFI 2NU4I 2RIJA 3OXGA 5HI7A 2CWGA 1WGCA 2ROWA 3PDNA 1M8BA 1WTJA 3FSXA 1MJBA 2UVOA 1TBNA 2OZUA 2LEOA 3TO9A 2OVOA 1H0ZA 5J8CA 1UVGA 1YU6C 1YTPA 2YUUA 1RFHA 3BJIA 2L7XA 1U5KA 1XBTA 2ODDA 1PTRA 1WKXA 2QQ0A 3B4VC 1UVFA 1SGYI 4AMLA 2NU3I 1SGRI 2ELIA 1PJUA 1SGPI 5DAEA 2CWFA 1Z2IA 5CCLA 2FNFX 2F3CI 3FC3A 2YQPA 2KMOA 1IY5A 1KMAA 2E5RA 1UUCA 5J8FA 1ULKA 2JZMA 2GKRI 1OMUA 2N71A 4A24A 1PTQA 2QQEA 2SGQI 1CT2I 1SGDI 3CXLA 3OXFA 4SGBI 1IW4A 1LR9A 1BMOA 1SGEI 1TBRR 1V1IA 1W4RA 2N17A 2UZ3A 2N1AB 2JA1A 1TIHA 2DB6A 3UEJA 1X74A 1MJAA 2JW6A 2M5XA 1OMTA 1DS2I 2NU0I 3HH2C 1FY7A 1X4SA 1XX6A 2QQCA 1CE3A 1XA6A 1HDLA 3QTLD 3UGDA 2L8EA 1KBEA 1UHAA 2GIVA 3VDUA 2OU2A 2KMPA 3GOXA 1Z7KB 2A20A 3TJQA 7WGAA 5FUYA 2XRCA 4GI3C 1R79A 2GKVA 1MT1A 1P9GA 1Y1CA 4B6DA 1FARA 1CGJI 2WCYA 1TUSA 2OD1A 2B8TA 2WVJA 3SGQI 2E73A 5E3RA 2V53A 4L9MA 2SGDI 1BUSA 4UXJA 3R5CA 5HQ8A 1CT4I 3D00A 3QWPA 3VE5A 1KBFA 3UFFA 2LB7A
chains in the Genus database with same CATH topology
1Q9BA 1ULNA 1K7UA 1HEVA 4WP4A 1ULMA 2X52A 2WGCA 2CWGA 1WGCA 2X3TA 2UVOA 1UHAA 7WGAA 1WKXA 1P9GA 1K7TA 4AMLA 1P9ZA 4MPIA 1K7VA 2DKVA 1ULKA 9WGAA 2LB7A 1WGTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q9B A;  1ULN A;  1K7U A;  1HEV A;  4WP4 A;  1ULM A;  2X52 A;  2WGC A;  2CWG A;  1WGC A;  2X3T A;  2UVO A;  1UHA A;  7WGA A;  1WKX A;  1P9G A;  1K7T A;  4AML A;  1P9Z A;  4MPI A;  1K7V A;  2DKV A;  1ULK A;  9WGA A;  2LB7 A;  1WGT A; 
#chains in the Genus database with same CATH topology
 4JCV E;  1MJ9 A;  1Q9B A;  2RC4 A;  2DIP A;  3UOE A;  1ULN A;  1VDD A;  2GKT I;  2K9H A;  2NU1 I;  2Y0M A;  4WP4 A;  3TO7 A;  1NUB A;  2ENN A;  3QAH A;  2JYY A;  5EX0 A;  3SEK C;  5FUX A;  1IY6 A;  1FYB A;  2WGC A;  4FKD A;  2GVI A;  1M8C A;  2QQD A;  1TBQ R;  2ARP F;  3TO6 A;  2PQ8 A;  2KMQ A;  1V1H A;  5E3Q A;  3E2I A;  4OVO A;  1AN1 I;  1Y1B A;  5FUV A;  1TOT A;  2V1C A;  3E59 A;  3R5B A;  1CSO I;  2J9R A;  1P9Z A;  3KY9 A;  1NXU A;  2JXD A;  4DNC A;  1R0R I;  2J87 A;  1K7V A;  3OXL A;  1OYV I;  3OVO A;  3OL0 A;  9WGA A;  1SGQ I;  1N13 A;  1W3S A;  1PCE A;  5EX3 A;  1K7U A;  4UXI A;  4UXH A;  1HEV A;  1TBO A;  2KCX A;  5FUW A;  4HGU A;  2CWH A;  1S20 A;  1HJA I;  2QPO A;  3MEK A;  1CHO I;  2ERW A;  5JHW C;  1FAQ A;  2V1C C;  2X3T A;  2ENZ A;  2CJS C;  1HPT A;  1LR8 A;  2B0U C;  1SGN I;  4E1P A;  3UGL A;  3UGI A;  2W0T A;  2NU2 I;  3FSY A;  3VDP A;  1K7T A;  1TGS I;  2LUY A;  1CGI I;  1TUR A;  2SGF I;  3TOB A;  4MPI A;  3RU0 A;  2BUS A;  2DKV A;  2SGP I;  5CCM A;  1DS3 I;  1OVO A;  1CT0 I;  3R5D A;  2P6A C;  1WGT A;  2VRW B;  3R5A A;  3TOA A;  1LR7 A;  3UEY A;  2ORV A;  5E3P A;  1ULM A;  2ORW A;  2X52 A;  2SGE I;  1Y8F A;  4E1R A;  3SGB I;  2KMR A;  2N52 A;  1PPF I;  2NU4 I;  2RIJ A;  3OXG A;  5HI7 A;  2CWG A;  1WGC A;  2ROW A;  3PDN A;  1M8B A;  1WTJ A;  3FSX A;  1MJB A;  2UVO A;  1TBN A;  2OZU A;  2LEO A;  3TO9 A;  2OVO A;  1H0Z A;  5J8C A;  1UVG A;  1YU6 C;  1YTP A;  2YUU A;  1RFH A;  3BJI A;  2L7X A;  1U5K A;  1XBT A;  2ODD A;  1PTR A;  1WKX A;  2QQ0 A;  3B4V C;  1UVF A;  1SGY I;  4AML A;  2NU3 I;  1SGR I;  2ELI A;  1PJU A;  1SGP I;  5DAE A;  2CWF A;  1Z2I A;  5CCL A;  2FNF X;  2F3C I;  3FC3 A;  2YQP A;  2KMO A;  1IY5 A;  1KMA A;  2E5R A;  1UUC A;  5J8F A;  1ULK A;  2JZM A;  2GKR I;  1OMU A;  2N71 A;  4A24 A;  1PTQ A;  2QQE A;  2SGQ I;  1CT2 I;  1SGD I;  3CXL A;  3OXF A;  4SGB I;  1IW4 A;  1LR9 A;  1BMO A;  1SGE I;  1TBR R;  1V1I A;  1W4R A;  2N17 A;  2UZ3 A;  2N1A B;  2JA1 A;  1TIH A;  2DB6 A;  3UEJ A;  1X74 A;  1MJA A;  2JW6 A;  2M5X A;  1OMT A;  1DS2 I;  2NU0 I;  3HH2 C;  1FY7 A;  1X4S A;  1XX6 A;  2QQC A;  1CE3 A;  1XA6 A;  1HDL A;  3QTL D;  3UGD A;  2L8E A;  1KBE A;  1UHA A;  2GIV A;  3VDU A;  2OU2 A;  2KMP A;  3GOX A;  1Z7K B;  2A20 A;  3TJQ A;  7WGA A;  5FUY A;  2XRC A;  4GI3 C;  1R79 A;  2GKV A;  1MT1 A;  1P9G A;  1Y1C A;  4B6D A;  1FAR A;  1CGJ I;  2WCY A;  1TUS A;  2OD1 A;  2B8T A;  2WVJ A;  3SGQ I;  2E73 A;  5E3R A;  2V53 A;  4L9M A;  2SGD I;  1BUS A;  4UXJ A;  3R5C A;  5HQ8 A;  1CT4 I;  3D00 A;  3QWP A;  3VE5 A;  1KBF A;  3UFF A;  2LB7 A; 
#chains in the Genus database with same CATH homology
 1Q9B A;  1ULN A;  1K7U A;  1HEV A;  4WP4 A;  1ULM A;  2X52 A;  2WGC A;  2CWG A;  1WGC A;  2X3T A;  2UVO A;  1UHA A;  7WGA A;  1WKX A;  1P9G A;  1K7T A;  4AML A;  1P9Z A;  4MPI A;  1K7V A;  2DKV A;  1ULK A;  9WGA A;  2LB7 A;  1WGT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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