1M8BA

Solution structure of the c state of turkey ovomucoid at ph 2.5
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
56
structure length
56
Chain Sequence
LAAVSVDCSEYPKDACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
publication title Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
pubmed doi rcsb
molecule keywords Ovomucoid
total genus 9
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 2002-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1m8bA00
1CHOI 1PPFI 2KMRA 2N17A 1FYBA 1LR7A 2F3CI 1IY6A 1UVGA 1IY5A 1TUSA 1MT1A 1H0ZA 2WCYA 1NUBA 1CSOI 1TGSI 1YTPA 2SGDI 1UUCA 2JYYA 1CGJI 2SGQI 1AN1I 1YU6C 1Y1CA 1TURA 1SGYI 3SGBI 1OYVI 1LR8A 2XRCA 2NU3I 3SEKC 3B4VC 5DAEA 1HPTA 1LR9A 1PCEA 1UVFA 2GKTI 1OVOA 1SGQI 1SGRI 3SGQI 2V53A 1M8CA 1HDLA 2BUSA 2N71A 2SGEI 1TIHA 2ARPF 1M8BA 2NU4I 4GI3C 1PJUA 1SGDI 2JXDA 1N13A 1BUSA 1SGPI 3TJQA 3HH2C 4OVOA 1CT4I 3OVOA 2GKVA 1DS2I 2LEOA 1TBRR 2OVOA 4SGBI 1CE3A 1BMOA 1SGEI 1CT0I 4HGUA 2KMPA 2SGPI 2NU0I 5JHWC 1Y1BA 2N52A 2M5XA 1CT2I 2P6AC 1KMAA 1R0RI 2JZMA 2QQCA 2NU2I 2KCXA 1IW4A 1OMUA 1HJAI 2KMOA 2KMQA 1CGII 2B0UC 2GKRI 1OMTA 2NU1I 1DS3I 1TBQR 1Z7KB 2QQDA 1SGNI 2ERWA 2SGFI 3QTLD
chains in the Genus database with same CATH superfamily
5FUVA 1ULNA 1CHOI 4UXHA 1PPFI 2KMRA 5E3RA 3OL0A 2WGCA 2N17A 2N1AB 3UGLA 1FAQA 1FYBA 1LR7A 2V1CC 2F3CI 1W4RA 1IY6A 1VDDA 3MEKA 2ELIA 1UVGA 1X4SA 1IY5A 3UEJA 3VDUA 1TUSA 1MT1A 1H0ZA 3FC3A 2WCYA 2GIVA 1NUBA 2L8EA 1CSOI 1TGSI 1YTPA 3FSYA 1MJAA 2SGDI 2PQ8A 1HEVA 1UUCA 2JYYA 1KBEA 1CGJI 1FARA 1MJ9A 3CXLA 1K7UA 1K7TA 1AN1I 1ULMA 1YU6C 1Y1CA 2SGQI 2CWHA 2V1CA 2E73A 4UXJA 2RIJA 1TURA 2ENZA 5HI7A 3UGIA 2K9HA 2L7XA 3FSXA 1SGYI 3SGBI 1OYVI 3R5AA 1LR8A 2XRCA 2NU3I 2X3TA 1UHAA 1Q9BA 2CJSC 3UFFA 2ROWA 2J87A 3SEKC 4B6DA 2X52A 4JCVE 1MJBA 1TBNA 3B4VC 2GVIA 5DAEA 3UEYA 1HPTA 1LR9A 3OXGA 1WGTA 1V1IA 2ORVA 5EX3A 2DKVA 3BJIA 1PCEA 1UVFA 2JW6A 2UVOA 3VE5A 3QAHA 3E2IA 2GKTI 1OVOA 2QQ0A 1SGQI 1P9ZA 2YUUA 1SGRI 2B8TA 3SGQI 2FNFX 2VRWB 2V53A 5E3QA 3R5BA 2WVJA 1RFHA 2QPOA 4MPIA 1WKXA 1W3SA 1FY7A 1M8CA 1HDLA 2BUSA 2N71A 2SGEI 1R79A 1TIHA 2ARPF 2E5RA 1M8BA 4A24A 2LB7A 2NU4I 4GI3C 1PJUA 3TO9A 5HQ8A 1K7VA 4FKDA 1SGDI 1N13A 2JXDA 5FUYA 1XA6A 1SGPI 2OD1A 3TJQA 2JA1A 1BUSA 3HH2C 2Y0MA 1P9GA 2UZ3A 4OVOA 3TO7A 5J8CA 1CT4I 4WP4A 3OVOA 1S20A 3GOXA 5FUXA 1ULKA 1TOTA 1Y8FA 3OXLA 2GKVA 2DB6A 1KBFA 2YQPA 4UXIA 1DS2I 1PTQA 2QQEA 2LEOA 4DNCA 2A20A 1TBRR 2OVOA 4SGBI 1CE3A 3TO6A 7WGAA 1BMOA 1SGEI 3TOBA 1CT0I 3E59A 3UGDA 4HGUA 2CWGA 2J9RA 2KMPA 2SGPI 1XX6A 2NU0I 1Z2IA 5JHWC 1Y1BA 2N52A 2M5XA 3R5DA 1CT2I 2P6AC 1KMAA 2CWFA 2RC4A 1R0RI 5EX0A 2JZMA 3VDPA 1TBOA 2ORWA 1NXUA 2QQCA 3PDNA 3RU0A 3KY9A 3R5CA 2NU2I 5CCLA 5J8FA 2KCXA 3QWPA 1IW4A 5CCMA 3OXFA 9WGAA 1X74A 1WGCA 1OMUA 1HJAI 2KMOA 5FUWA 2KMQA 3D00A 4L9MA 1CGII 5E3PA 2B0UC 1PTRA 1V1HA 2GKRI 1OMTA 2LUYA 2NU1I 1DS3I 2ODDA 2OZUA 3TOAA 1TBQR 1Z7KB 3UOEA 2OU2A 2QQDA 4E1PA 2ENNA 1WTJA 1U5KA 1SGNI 2W0TA 4AMLA 4E1RA 2ERWA 2DIPA 2SGFI 3QTLD 1XBTA
chains in the Genus database with same CATH topology
5FUVA 1CHOI 4UXHA 1PPFI 2KMRA 3UGLA 1FAQA 2N17A 2N1AB 1FYBA 1LR7A 2V1CC 2F3CI 1W4RA 1IY6A 1VDDA 3MEKA 2ELIA 1UVGA 1X4SA 1IY5A 3UEJA 3VDUA 1TUSA 1MT1A 1H0ZA 3FC3A 2WCYA 2L8EA 1NUBA 1CSOI 1TGSI 1YTPA 2SGDI 1UUCA 2JYYA 1KBEA 1CGJI 1FARA 3CXLA 3OL0A 2SGQI 1AN1I 1YU6C 1Y1CA 2V1CA 4UXJA 2E73A 1TURA 2ENZA 5HI7A 3UGIA 2K9HA 2L7XA 1SGYI 3SGBI 1OYVI 1LR8A 2XRCA 2NU3I 2CJSC 3UFFA 2ROWA 2J87A 3SEKC 4B6DA 4JCVE 1TBNA 3B4VC 2GVIA 5DAEA 3UEYA 1HPTA 1LR9A 3OXGA 2ORVA 1V1IA 5EX3A 3BJIA 1PCEA 1UVFA 2JW6A 3VE5A 3E2IA 2GKTI 1OVOA 2QQ0A 1SGQI 2YUUA 1SGRI 2B8TA 3SGQI 2FNFX 2VRWB 2V53A 2WVJA 1RFHA 2QPOA 1W3SA 1M8CA 1HDLA 2BUSA 2N71A 2SGEI 1R79A 1TIHA 2ARPF 2E5RA 1M8BA 4A24A 2NU4I 4GI3C 1PJUA 5HQ8A 4FKDA 1SGDI 1N13A 2JXDA 5FUYA 1XA6A 1SGPI 2OD1A 3TJQA 2JA1A 1BUSA 3HH2C 2UZ3A 4OVOA 1CT4I 3OVOA 3GOXA 5FUXA 1TOTA 1Y8FA 3OXLA 2GKVA 2DB6A 1KBFA 2YQPA 4UXIA 1DS2I 1PTQA 2QQEA 2LEOA 2A20A 1TBRR 2OVOA 4SGBI 1CE3A 1BMOA 1SGEI 1CT0I 3E59A 3UGDA 4HGUA 2J9RA 2KMPA 2SGPI 1XX6A 2NU0I 5JHWC 1Y1BA 2N52A 2M5XA 1CT2I 2P6AC 1KMAA 1R0RI 5EX0A 2JZMA 3VDPA 1TBOA 2ORWA 3PDNA 2QQCA 3RU0A 3KY9A 2NU2I 5CCLA 2KCXA 3QWPA 1IW4A 5CCMA 3OXFA 1X74A 1OMUA 1HJAI 2KMOA 5FUWA 2KMQA 3D00A 4L9MA 1CGII 2B0UC 1PTRA 1V1HA 2GKRI 1OMTA 2LUYA 2NU1I 1DS3I 2ODDA 1TBQR 1Z7KB 2QQDA 4E1PA 2ENNA 2W0TA 1U5KA 1SGNI 4E1RA 2ERWA 2DIPA 2SGFI 3QTLD 1XBTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CHO I;  1PPF I;  2KMR A;  2N17 A;  1FYB A;  1LR7 A;  2F3C I;  1IY6 A;  1UVG A;  1IY5 A;  1TUS A;  1MT1 A;  1H0Z A;  2WCY A;  1NUB A;  1CSO I;  1TGS I;  1YTP A;  2SGD I;  1UUC A;  2JYY A;  1CGJ I;  2SGQ I;  1AN1 I;  1YU6 C;  1Y1C A;  1TUR A;  1SGY I;  3SGB I;  1OYV I;  1LR8 A;  2XRC A;  2NU3 I;  3SEK C;  3B4V C;  5DAE A;  1HPT A;  1LR9 A;  1PCE A;  1UVF A;  2GKT I;  1OVO A;  1SGQ I;  1SGR I;  3SGQ I;  2V53 A;  1M8C A;  1HDL A;  2BUS A;  2N71 A;  2SGE I;  1TIH A;  2ARP F;  1M8B A;  2NU4 I;  4GI3 C;  1PJU A;  1SGD I;  2JXD A;  1N13 A;  1BUS A;  1SGP I;  3TJQ A;  3HH2 C;  4OVO A;  1CT4 I;  3OVO A;  2GKV A;  1DS2 I;  2LEO A;  1TBR R;  2OVO A;  4SGB I;  1CE3 A;  1BMO A;  1SGE I;  1CT0 I;  4HGU A;  2KMP A;  2SGP I;  2NU0 I;  5JHW C;  1Y1B A;  2N52 A;  2M5X A;  1CT2 I;  2P6A C;  1KMA A;  1R0R I;  2JZM A;  2QQC A;  2NU2 I;  2KCX A;  1IW4 A;  1OMU A;  1HJA I;  2KMO A;  2KMQ A;  1CGI I;  2B0U C;  2GKR I;  1OMT A;  2NU1 I;  1DS3 I;  1TBQ R;  1Z7K B;  2QQD A;  1SGN I;  2ERW A;  2SGF I;  3QTL D; 
#chains in the Genus database with same CATH topology
 5FUV A;  1ULN A;  1CHO I;  4UXH A;  1PPF I;  2KMR A;  5E3R A;  3OL0 A;  2WGC A;  2N17 A;  2N1A B;  3UGL A;  1FAQ A;  1FYB A;  1LR7 A;  2V1C C;  2F3C I;  1W4R A;  1IY6 A;  1VDD A;  3MEK A;  2ELI A;  1UVG A;  1X4S A;  1IY5 A;  3UEJ A;  3VDU A;  1TUS A;  1MT1 A;  1H0Z A;  3FC3 A;  2WCY A;  2GIV A;  1NUB A;  2L8E A;  1CSO I;  1TGS I;  1YTP A;  3FSY A;  1MJA A;  2SGD I;  2PQ8 A;  1HEV A;  1UUC A;  2JYY A;  1KBE A;  1CGJ I;  1FAR A;  1MJ9 A;  3CXL A;  1K7U A;  1K7T A;  1AN1 I;  1ULM A;  1YU6 C;  1Y1C A;  2SGQ I;  2CWH A;  2V1C A;  2E73 A;  4UXJ A;  2RIJ A;  1TUR A;  2ENZ A;  5HI7 A;  3UGI A;  2K9H A;  2L7X A;  3FSX A;  1SGY I;  3SGB I;  1OYV I;  3R5A A;  1LR8 A;  2XRC A;  2NU3 I;  2X3T A;  1UHA A;  1Q9B A;  2CJS C;  3UFF A;  2ROW A;  2J87 A;  3SEK C;  4B6D A;  2X52 A;  4JCV E;  1MJB A;  1TBN A;  3B4V C;  2GVI A;  5DAE A;  3UEY A;  1HPT A;  1LR9 A;  3OXG A;  1WGT A;  1V1I A;  2ORV A;  5EX3 A;  2DKV A;  3BJI A;  1PCE A;  1UVF A;  2JW6 A;  2UVO A;  3VE5 A;  3QAH A;  3E2I A;  2GKT I;  1OVO A;  2QQ0 A;  1SGQ I;  1P9Z A;  2YUU A;  1SGR I;  2B8T A;  3SGQ I;  2FNF X;  2VRW B;  2V53 A;  5E3Q A;  3R5B A;  2WVJ A;  1RFH A;  2QPO A;  4MPI A;  1WKX A;  1W3S A;  1FY7 A;  1M8C A;  1HDL A;  2BUS A;  2N71 A;  2SGE I;  1R79 A;  1TIH A;  2ARP F;  2E5R A;  1M8B A;  4A24 A;  2LB7 A;  2NU4 I;  4GI3 C;  1PJU A;  3TO9 A;  5HQ8 A;  1K7V A;  4FKD A;  1SGD I;  1N13 A;  2JXD A;  5FUY A;  1XA6 A;  1SGP I;  2OD1 A;  3TJQ A;  2JA1 A;  1BUS A;  3HH2 C;  2Y0M A;  1P9G A;  2UZ3 A;  4OVO A;  3TO7 A;  5J8C A;  1CT4 I;  4WP4 A;  3OVO A;  1S20 A;  3GOX A;  5FUX A;  1ULK A;  1TOT A;  1Y8F A;  3OXL A;  2GKV A;  2DB6 A;  1KBF A;  2YQP A;  4UXI A;  1DS2 I;  1PTQ A;  2QQE A;  2LEO A;  4DNC A;  2A20 A;  1TBR R;  2OVO A;  4SGB I;  1CE3 A;  3TO6 A;  7WGA A;  1BMO A;  1SGE I;  3TOB A;  1CT0 I;  3E59 A;  3UGD A;  4HGU A;  2CWG A;  2J9R A;  2KMP A;  2SGP I;  1XX6 A;  2NU0 I;  1Z2I A;  5JHW C;  1Y1B A;  2N52 A;  2M5X A;  3R5D A;  1CT2 I;  2P6A C;  1KMA A;  2CWF A;  2RC4 A;  1R0R I;  5EX0 A;  2JZM A;  3VDP A;  1TBO A;  2ORW A;  1NXU A;  2QQC A;  3PDN A;  3RU0 A;  3KY9 A;  3R5C A;  2NU2 I;  5CCL A;  5J8F A;  2KCX A;  3QWP A;  1IW4 A;  5CCM A;  3OXF A;  9WGA A;  1X74 A;  1WGC A;  1OMU A;  1HJA I;  2KMO A;  5FUW A;  2KMQ A;  3D00 A;  4L9M A;  1CGI I;  5E3P A;  2B0U C;  1PTR A;  1V1H A;  2GKR I;  1OMT A;  2LUY A;  2NU1 I;  1DS3 I;  2ODD A;  2OZU A;  3TOA A;  1TBQ R;  1Z7K B;  3UOE A;  2OU2 A;  2QQD A;  4E1P A;  2ENN A;  1WTJ A;  1U5K A;  1SGN I;  2W0T A;  4AML A;  4E1R A;  2ERW A;  2DIP A;  2SGF I;  3QTL D;  1XBT A; 
#chains in the Genus database with same CATH homology
 5FUV A;  1CHO I;  4UXH A;  1PPF I;  2KMR A;  3UGL A;  1FAQ A;  2N17 A;  2N1A B;  1FYB A;  1LR7 A;  2V1C C;  2F3C I;  1W4R A;  1IY6 A;  1VDD A;  3MEK A;  2ELI A;  1UVG A;  1X4S A;  1IY5 A;  3UEJ A;  3VDU A;  1TUS A;  1MT1 A;  1H0Z A;  3FC3 A;  2WCY A;  2L8E A;  1NUB A;  1CSO I;  1TGS I;  1YTP A;  2SGD I;  1UUC A;  2JYY A;  1KBE A;  1CGJ I;  1FAR A;  3CXL A;  3OL0 A;  2SGQ I;  1AN1 I;  1YU6 C;  1Y1C A;  2V1C A;  4UXJ A;  2E73 A;  1TUR A;  2ENZ A;  5HI7 A;  3UGI A;  2K9H A;  2L7X A;  1SGY I;  3SGB I;  1OYV I;  1LR8 A;  2XRC A;  2NU3 I;  2CJS C;  3UFF A;  2ROW A;  2J87 A;  3SEK C;  4B6D A;  4JCV E;  1TBN A;  3B4V C;  2GVI A;  5DAE A;  3UEY A;  1HPT A;  1LR9 A;  3OXG A;  2ORV A;  1V1I A;  5EX3 A;  3BJI A;  1PCE A;  1UVF A;  2JW6 A;  3VE5 A;  3E2I A;  2GKT I;  1OVO A;  2QQ0 A;  1SGQ I;  2YUU A;  1SGR I;  2B8T A;  3SGQ I;  2FNF X;  2VRW B;  2V53 A;  2WVJ A;  1RFH A;  2QPO A;  1W3S A;  1M8C A;  1HDL A;  2BUS A;  2N71 A;  2SGE I;  1R79 A;  1TIH A;  2ARP F;  2E5R A;  1M8B A;  4A24 A;  2NU4 I;  4GI3 C;  1PJU A;  5HQ8 A;  4FKD A;  1SGD I;  1N13 A;  2JXD A;  5FUY A;  1XA6 A;  1SGP I;  2OD1 A;  3TJQ A;  2JA1 A;  1BUS A;  3HH2 C;  2UZ3 A;  4OVO A;  1CT4 I;  3OVO A;  3GOX A;  5FUX A;  1TOT A;  1Y8F A;  3OXL A;  2GKV A;  2DB6 A;  1KBF A;  2YQP A;  4UXI A;  1DS2 I;  1PTQ A;  2QQE A;  2LEO A;  2A20 A;  1TBR R;  2OVO A;  4SGB I;  1CE3 A;  1BMO A;  1SGE I;  1CT0 I;  3E59 A;  3UGD A;  4HGU A;  2J9R A;  2KMP A;  2SGP I;  1XX6 A;  2NU0 I;  5JHW C;  1Y1B A;  2N52 A;  2M5X A;  1CT2 I;  2P6A C;  1KMA A;  1R0R I;  5EX0 A;  2JZM A;  3VDP A;  1TBO A;  2ORW A;  3PDN A;  2QQC A;  3RU0 A;  3KY9 A;  2NU2 I;  5CCL A;  2KCX A;  3QWP A;  1IW4 A;  5CCM A;  3OXF A;  1X74 A;  1OMU A;  1HJA I;  2KMO A;  5FUW A;  2KMQ A;  3D00 A;  4L9M A;  1CGI I;  2B0U C;  1PTR A;  1V1H A;  2GKR I;  1OMT A;  2LUY A;  2NU1 I;  1DS3 I;  2ODD A;  1TBQ R;  1Z7K B;  2QQD A;  4E1P A;  2ENN A;  2W0T A;  1U5K A;  1SGN I;  4E1R A;  2ERW A;  2DIP A;  2SGF I;  3QTL D;  1XBT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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