2X52A

Crystal structure of wheat germ agglutinin isolectin 3 in complex with a synthetic divalent carbohydrate ligand
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Sugar binding protein
molecule keywords AGGLUTININ ISOLECTIN 3
publication title Structural Basis of Multivalent Binding to Wheat Germ Agglutinin.
pubmed doi rcsb
total genus 50
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x52A04
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x52A02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x52A03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 2x52A01
2WGCA 1ULMA 1Q9BA 1ULKA 4WP4A 1WGCA 7WGAA 1K7TA 1WKXA 1K7VA 9WGAA 2UVOA 2CWGA 2DKVA 2X52A 4AMLA 2X3TA 4MPIA 1P9GA 1WGTA 1UHAA 1P9ZA 1HEVA 1ULNA 2LB7A 1K7UA
chains in the Genus database with same CATH superfamily
1CHOI 2OU2A 4OVOA 3TJQA 2KMQA 1IY5A 4GI3C 5J8FA 1SGYI 2N17A 2NU3I 1Q9BA 1AN1I 1R79A 1ULKA 2JA1A 1MJAA 1V1HA 1FAQA 4E1RA 1DS2I 2F3CI 1K7VA 3HH2C 1CGJI 1Y1CA 1YTPA 2CWFA 2X52A 4AMLA 1FY7A 1W4RA 4MPIA 2B8TA 2E5RA 4DNCA 1TBRR 1WGTA 1WTJA 2JYYA 2XRCA 3GOXA 1IW4A 2L8EA 2CWHA 3UGDA 1UUCA 1HEVA 3FSYA 5E3RA 1LR8A 2J87A 2V53A 2DB6A 3PDNA 1CT4I 2NU0I 3OXFA 3QWPA 2QQCA 5HQ8A 2PQ8A 1U5KA 2JZMA 3TO9A 1PCEA 3UEJA 1TIHA 1CE3A 2QQDA 2WGCA 3UFFA 4SGBI 2A20A 1Z7KB 1TURA 1SGQI 3R5BA 1LR9A 2KMPA 3FSXA 3MEKA 4FKDA 2OVOA 5FUYA 3QAHA 2NU1I 3R5CA 1TBNA 1WGCA 2ODDA 4WP4A 3UGLA 1W3SA 2ARPF 1X74A 2QQ0A 2VRWB 3TO7A 4A24A 2YUUA 2V1CC 3QTLD 3TOAA 2L7XA 2RC4A 1TUSA 2DIPA 1N13A 2DKVA 5FUWA 2W0TA 3UGIA 2ERWA 3TOBA 1SGDI 3OXGA 3FC3A 2BUSA 1M8BA 3OL0A 4UXIA 1H0ZA 1BUSA 2ENZA 1OMTA 2SGQI 3R5DA 1MJBA 2LUYA 1ULNA 1SGRI 2J9RA 5HI7A 1OMUA 1Z2IA 2M5XA 1LR7A 5FUVA 2NU4I 1MT1A 1PTQA 1K7UA 1HPTA 1XX6A 1KBEA 2KMRA 1ULMA 2K9HA 2RIJA 2QQEA 2CJSC 3VDPA 2N71A 1SGPI 7WGAA 3OVOA 2WCYA 3RU0A 2OD1A 1SGEI 1WKXA 1TBOA 4UXHA 1BMOA 1FYBA 2ELIA 2KCXA 2SGEI 2KMOA 1R0RI 2YQPA 3UEYA 2ORWA 9WGAA 2GKTI 2SGDI 2X3TA 1RFHA 1P9GA 3TO6A 1OYVI 5EX0A 4B6DA 2B0UC 3UOEA 1PJUA 1SGNI 1HDLA 1S20A 3SEKC 1HJAI 1CT0I 2GVIA 2GKRI 1KMAA 1PPFI 2WVJA 3VE5A 1PTRA 1NUBA 3OXLA 2LB7A 5J8CA 1FARA 2JXDA 5EX3A 5JHWC 1IY6A 5CCLA 4E1PA 1TOTA 5E3QA 3E2IA 1UVFA 2E73A 4UXJA 1XA6A 1OVOA 1Y8FA 2SGPI 2ENNA 1Y1BA 1YU6C 2GIVA 3KY9A 2ROWA 3BJIA 3SGQI 2ORVA 5E3PA 2FNFX 1CSOI 1MJ9A 2SGFI 1CT2I 1TGSI 1XBTA 1K7TA 1V1IA 1CGII 3R5AA 5DAEA 4JCVE 3B4VC 2GKVA 2N52A 2UVOA 1VDDA 1DS3I 2CWGA 2QPOA 3E59A 3SGBI 1X4SA 2N1AB 2OZUA 2P6AC 5CCMA 4HGUA 5FUXA 1TBQR 1UHAA 1P9ZA 2LEOA 2Y0MA 2NU2I 3CXLA 1UVGA 1NXUA 4L9MA 2UZ3A 3D00A 1M8CA 2V1CA 1KBFA 3VDUA 2JW6A
chains in the Genus database with same CATH topology
2WGCA 1ULMA 1Q9BA 1ULKA 4WP4A 1WGCA 7WGAA 1K7TA 1WKXA 1K7VA 9WGAA 2UVOA 2CWGA 2DKVA 2X52A 4AMLA 2X3TA 4MPIA 1P9GA 1WGTA 1UHAA 1P9ZA 1HEVA 1ULNA 2LB7A 1K7UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WGC A;  1ULM A;  1Q9B A;  1ULK A;  4WP4 A;  1WGC A;  7WGA A;  1K7T A;  1WKX A;  1K7V A;  9WGA A;  2UVO A;  2CWG A;  2DKV A;  2X52 A;  4AML A;  2X3T A;  4MPI A;  1P9G A;  1WGT A;  1UHA A;  1P9Z A;  1HEV A;  1ULN A;  2LB7 A;  1K7U A; 
#chains in the Genus database with same CATH topology
 1CHO I;  2OU2 A;  4OVO A;  3TJQ A;  2KMQ A;  1IY5 A;  4GI3 C;  5J8F A;  1SGY I;  2N17 A;  2NU3 I;  1Q9B A;  1AN1 I;  1R79 A;  1ULK A;  2JA1 A;  1MJA A;  1V1H A;  1FAQ A;  4E1R A;  1DS2 I;  2F3C I;  1K7V A;  3HH2 C;  1CGJ I;  1Y1C A;  1YTP A;  2CWF A;  2X52 A;  4AML A;  1FY7 A;  1W4R A;  4MPI A;  2B8T A;  2E5R A;  4DNC A;  1TBR R;  1WGT A;  1WTJ A;  2JYY A;  2XRC A;  3GOX A;  1IW4 A;  2L8E A;  2CWH A;  3UGD A;  1UUC A;  1HEV A;  3FSY A;  5E3R A;  1LR8 A;  2J87 A;  2V53 A;  2DB6 A;  3PDN A;  1CT4 I;  2NU0 I;  3OXF A;  3QWP A;  2QQC A;  5HQ8 A;  2PQ8 A;  1U5K A;  2JZM A;  3TO9 A;  1PCE A;  3UEJ A;  1TIH A;  1CE3 A;  2QQD A;  2WGC A;  3UFF A;  4SGB I;  2A20 A;  1Z7K B;  1TUR A;  1SGQ I;  3R5B A;  1LR9 A;  2KMP A;  3FSX A;  3MEK A;  4FKD A;  2OVO A;  5FUY A;  3QAH A;  2NU1 I;  3R5C A;  1TBN A;  1WGC A;  2ODD A;  4WP4 A;  3UGL A;  1W3S A;  2ARP F;  1X74 A;  2QQ0 A;  2VRW B;  3TO7 A;  4A24 A;  2YUU A;  2V1C C;  3QTL D;  3TOA A;  2L7X A;  2RC4 A;  1TUS A;  2DIP A;  1N13 A;  2DKV A;  5FUW A;  2W0T A;  3UGI A;  2ERW A;  3TOB A;  1SGD I;  3OXG A;  3FC3 A;  2BUS A;  1M8B A;  3OL0 A;  4UXI A;  1H0Z A;  1BUS A;  2ENZ A;  1OMT A;  2SGQ I;  3R5D A;  1MJB A;  2LUY A;  1ULN A;  1SGR I;  2J9R A;  5HI7 A;  1OMU A;  1Z2I A;  2M5X A;  1LR7 A;  5FUV A;  2NU4 I;  1MT1 A;  1PTQ A;  1K7U A;  1HPT A;  1XX6 A;  1KBE A;  2KMR A;  1ULM A;  2K9H A;  2RIJ A;  2QQE A;  2CJS C;  3VDP A;  2N71 A;  1SGP I;  7WGA A;  3OVO A;  2WCY A;  3RU0 A;  2OD1 A;  1SGE I;  1WKX A;  1TBO A;  4UXH A;  1BMO A;  1FYB A;  2ELI A;  2KCX A;  2SGE I;  2KMO A;  1R0R I;  2YQP A;  3UEY A;  2ORW A;  9WGA A;  2GKT I;  2SGD I;  2X3T A;  1RFH A;  1P9G A;  3TO6 A;  1OYV I;  5EX0 A;  4B6D A;  2B0U C;  3UOE A;  1PJU A;  1SGN I;  1HDL A;  1S20 A;  3SEK C;  1HJA I;  1CT0 I;  2GVI A;  2GKR I;  1KMA A;  1PPF I;  2WVJ A;  3VE5 A;  1PTR A;  1NUB A;  3OXL A;  2LB7 A;  5J8C A;  1FAR A;  2JXD A;  5EX3 A;  5JHW C;  1IY6 A;  5CCL A;  4E1P A;  1TOT A;  5E3Q A;  3E2I A;  1UVF A;  2E73 A;  4UXJ A;  1XA6 A;  1OVO A;  1Y8F A;  2SGP I;  2ENN A;  1Y1B A;  1YU6 C;  2GIV A;  3KY9 A;  2ROW A;  3BJI A;  3SGQ I;  2ORV A;  5E3P A;  2FNF X;  1CSO I;  1MJ9 A;  2SGF I;  1CT2 I;  1TGS I;  1XBT A;  1K7T A;  1V1I A;  1CGI I;  3R5A A;  5DAE A;  4JCV E;  3B4V C;  2GKV A;  2N52 A;  2UVO A;  1VDD A;  1DS3 I;  2CWG A;  2QPO A;  3E59 A;  3SGB I;  1X4S A;  2N1A B;  2OZU A;  2P6A C;  5CCM A;  4HGU A;  5FUX A;  1TBQ R;  1UHA A;  1P9Z A;  2LEO A;  2Y0M A;  2NU2 I;  3CXL A;  1UVG A;  1NXU A;  4L9M A;  2UZ3 A;  3D00 A;  1M8C A;  2V1C A;  1KBF A;  3VDU A;  2JW6 A; 
#chains in the Genus database with same CATH homology
 2WGC A;  1ULM A;  1Q9B A;  1ULK A;  4WP4 A;  1WGC A;  7WGA A;  1K7T A;  1WKX A;  1K7V A;  9WGA A;  2UVO A;  2CWG A;  2DKV A;  2X52 A;  4AML A;  2X3T A;  4MPI A;  1P9G A;  1WGT A;  1UHA A;  1P9Z A;  1HEV A;  1ULN A;  2LB7 A;  1K7U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...