2KMQA

Solution structure of intermediate iib of leech-derived tryptase inhibitor, ldti.
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
44
structure length
44
Chain Sequence
KKVCACPKILKPVCGSDGRTYANSCIARCNGVSIKSEGSCPTGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Leech-derived tryptase inhibitor C
publication title Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
pubmed doi rcsb
source organism Hirudo medicinalis
total genus 5
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2kmqA00
1CGJI 2XRCA 2F3CI 1UVGA 4HGUA 3TJQA 2OVOA 2LEOA 2JXDA 1LR7A 2N71A 2QQCA 1HDLA 2GKTI 1CT2I 1KMAA 1PCEA 1SGDI 2NU4I 1SGYI 1Y1CA 1R0RI 2KMRA 1SGEI 5DAEA 2ARPF 1TGSI 1CHOI 1OVOA 1TUSA 1BUSA 1Z7KB 4SGBI 1CE3A 2SGPI 2P6AC 1CT4I 2SGFI 1N13A 1TBQR 4OVOA 1UVFA 2QQDA 4GI3C 1UUCA 2NU3I 2KMPA 1PPFI 3B4VC 1IY6A 2N17A 3SGQI 2NU1I 1TURA 1H0ZA 1DS3I 2JZMA 5JHWC 2SGEI 3SGBI 2KMQA 2NU0I 1DS2I 1CT0I 2JYYA 2SGQI 2ERWA 1TIHA 2B0UC 1SGRI 1LR8A 1SGPI 1NUBA 2BUSA 1FYBA 1OYVI 1M8CA 1PJUA 1AN1I 1LR9A 1YU6C 1Y1BA 3OVOA 1IY5A 1SGNI 2GKVA 2N52A 2WCYA 1OMTA 1CGII 2KCXA 1MT1A 1YTPA 2M5XA 2SGDI 1HPTA 1SGQI 1M8BA 2GKRI 2KMOA 2V53A 1OMUA 1CSOI 2NU2I 3QTLD 3SEKC 1IW4A 1BMOA 1TBRR 1HJAI 3HH2C
chains in the Genus database with same CATH superfamily
3TO9A 1TOTA 1CGJI 2W0TA 2XRCA 2F3CI 3UEJA 1ULKA 4AMLA 1UVGA 4HGUA 3TJQA 2OVOA 2LEOA 2UVOA 4UXHA 7WGAA 1W4RA 2YUUA 1FAQA 1Y8FA 3OL0A 2JXDA 2X52A 3BJIA 1LR7A 2N71A 2QQCA 1HDLA 1K7VA 1V1HA 3QAHA 1MJ9A 1XX6A 5E3RA 1KBFA 2GKTI 4B6DA 3E2IA 3CXLA 1CT2I 4MPIA 4E1PA 1KMAA 1PCEA 1SGDI 2NU4I 2A20A 2ENZA 1SGYI 1Y1CA 1R0RI 1X4SA 4UXJA 2KMRA 2DB6A 1SGEI 2ORWA 2V1CA 1PTQA 2ARPF 2OZUA 5DAEA 1TGSI 5EX3A 1CHOI 1OVOA 1TUSA 1BUSA 1NXUA 1RFHA 2JW6A 1Z7KB 2GVIA 4SGBI 3UGLA 1CE3A 4L9MA 2JA1A 2SGPI 2V1CC 3OXGA 2P6AC 1CT4I 3VE5A 1W3SA 2SGFI 1N13A 1TBQR 2QQEA 1PTRA 4OVOA 1Q9BA 3TO7A 3VDUA 3VDPA 5FUVA 3GOXA 2ORVA 3FSYA 1UVFA 2QQDA 4GI3C 1UUCA 2NU3I 1WKXA 1FY7A 2KMPA 1PPFI 3B4VC 3R5BA 2E5RA 5FUXA 3UOEA 1IY6A 2DIPA 1K7UA 5HQ8A 2N17A 2CJSC 9WGAA 2ELIA 1MJBA 3SGQI 2CWFA 2NU1I 5FUWA 2L7XA 4DNCA 5HI7A 2N1AB 3PDNA 3R5DA 1TURA 1H0ZA 3R5AA 1DS3I 1UHAA 2JZMA 5JHWC 1P9GA 2FNFX 2SGEI 5FUYA 2RC4A 2PQ8A 2OU2A 3SGBI 3FC3A 2UZ3A 1Z2IA 2GIVA 2KMQA 1DS2I 2NU0I 1CT0I 2DKVA 2ROWA 2JYYA 3E59A 3MEKA 4A24A 2VRWB 2SGQI 2ERWA 2Y0MA 1TIHA 4UXIA 1WGCA 2B0UC 4JCVE 1SGRI 2ENNA 1LR8A 1SGPI 1NUBA 1ULNA 2L8EA 2YQPA 1V1IA 2WVJA 2BUSA 1FYBA 1OYVI 1M8CA 2RIJA 1PJUA 3RU0A 5CCMA 5E3QA 1AN1I 2J87A 1XA6A 1LR9A 1YU6C 1XBTA 1Y1BA 3OVOA 1FARA 1IY5A 1R79A 1SGNI 2CWGA 2GKVA 1P9ZA 2CWHA 2N52A 1KBEA 1OMTA 1TBOA 2QQ0A 2WCYA 1CGII 1WGTA 3R5CA 1ULMA 1U5KA 2KCXA 2E73A 2ODDA 4FKDA 5EX0A 3KY9A 2LUYA 3TO6A 3UGIA 1MT1A 1VDDA 1YTPA 2M5XA 2B8TA 2K9HA 5J8CA 2SGDI 1HPTA 1SGQI 3UFFA 1K7TA 2X3TA 5CCLA 1TBNA 1S20A 2QPOA 2LB7A 5J8FA 4E1RA 1M8BA 2GKRI 2KMOA 3OXLA 3OXFA 2V53A 1OMUA 3TOAA 1CSOI 2NU2I 3QTLD 3SEKC 1IW4A 3TOBA 4WP4A 1BMOA 2OD1A 1TBRR 3UGDA 1X74A 1HEVA 1HJAI 3QWPA 3D00A 3HH2C 1WTJA 3FSXA 5E3PA 2J9RA 2WGCA 3UEYA 1MJAA
chains in the Genus database with same CATH topology
1TOTA 1CGJI 2W0TA 2XRCA 2F3CI 3UEJA 1UVGA 4HGUA 3TJQA 2OVOA 2LEOA 4UXHA 1W4RA 2YUUA 1FAQA 1Y8FA 3OL0A 2JXDA 3BJIA 1LR7A 2N71A 2QQCA 1HDLA 1V1HA 1XX6A 1KBFA 2GKTI 4B6DA 3E2IA 3CXLA 1CT2I 4E1PA 1KMAA 1PCEA 1SGDI 2NU4I 2A20A 2ENZA 1SGYI 1Y1CA 1R0RI 1X4SA 4UXJA 2KMRA 2DB6A 1SGEI 2ORWA 2V1CA 1PTQA 2ARPF 5DAEA 5EX3A 1TGSI 1CHOI 1OVOA 1TUSA 1BUSA 1RFHA 2JW6A 1Z7KB 2GVIA 4SGBI 3UGLA 1CE3A 4L9MA 2JA1A 2SGPI 2V1CC 3OXGA 2P6AC 1CT4I 3VE5A 1W3SA 2SGFI 1N13A 1TBQR 2QQEA 1PTRA 4OVOA 3VDUA 3GOXA 3VDPA 5FUVA 2ORVA 1UVFA 2QQDA 4GI3C 1UUCA 2NU3I 2KMPA 1PPFI 3B4VC 1IY6A 2E5RA 5FUXA 2DIPA 5HQ8A 2N17A 2CJSC 2ELIA 3SGQI 2NU1I 5FUWA 2L7XA 5HI7A 2N1AB 3PDNA 1TURA 1H0ZA 1DS3I 2JZMA 5JHWC 2FNFX 2SGEI 5FUYA 3SGBI 3FC3A 2UZ3A 2ROWA 2KMQA 2NU0I 1DS2I 3E59A 1CT0I 4A24A 3MEKA 2JYYA 2VRWB 2SGQI 2ERWA 1TIHA 4UXIA 2B0UC 4JCVE 1SGRI 2ENNA 1LR8A 1SGPI 1NUBA 2L8EA 2YQPA 1V1IA 2WVJA 2BUSA 1FYBA 1OYVI 1M8CA 1PJUA 3RU0A 5CCMA 1AN1I 2J87A 1XA6A 1LR9A 1YU6C 1XBTA 1Y1BA 3OVOA 1FARA 1IY5A 1R79A 1SGNI 2GKVA 2N52A 1KBEA 1OMTA 1TBOA 2QQ0A 2WCYA 1CGII 1U5KA 2KCXA 2E73A 2ODDA 4FKDA 5EX0A 3KY9A 2LUYA 3UGIA 1MT1A 1VDDA 1YTPA 2M5XA 2B8TA 2K9HA 2SGDI 1HPTA 1SGQI 3UFFA 5CCLA 1TBNA 2QPOA 4E1RA 1M8BA 2GKRI 2KMOA 3OXLA 3OXFA 2V53A 1OMUA 1CSOI 2NU2I 3QTLD 3SEKC 1IW4A 1BMOA 2OD1A 1TBRR 3UGDA 1X74A 1HJAI 3QWPA 3D00A 3HH2C 2J9RA 3UEYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CGJ I;  2XRC A;  2F3C I;  1UVG A;  4HGU A;  3TJQ A;  2OVO A;  2LEO A;  2JXD A;  1LR7 A;  2N71 A;  2QQC A;  1HDL A;  2GKT I;  1CT2 I;  1KMA A;  1PCE A;  1SGD I;  2NU4 I;  1SGY I;  1Y1C A;  1R0R I;  2KMR A;  1SGE I;  5DAE A;  2ARP F;  1TGS I;  1CHO I;  1OVO A;  1TUS A;  1BUS A;  1Z7K B;  4SGB I;  1CE3 A;  2SGP I;  2P6A C;  1CT4 I;  2SGF I;  1N13 A;  1TBQ R;  4OVO A;  1UVF A;  2QQD A;  4GI3 C;  1UUC A;  2NU3 I;  2KMP A;  1PPF I;  3B4V C;  1IY6 A;  2N17 A;  3SGQ I;  2NU1 I;  1TUR A;  1H0Z A;  1DS3 I;  2JZM A;  5JHW C;  2SGE I;  3SGB I;  2KMQ A;  2NU0 I;  1DS2 I;  1CT0 I;  2JYY A;  2SGQ I;  2ERW A;  1TIH A;  2B0U C;  1SGR I;  1LR8 A;  1SGP I;  1NUB A;  2BUS A;  1FYB A;  1OYV I;  1M8C A;  1PJU A;  1AN1 I;  1LR9 A;  1YU6 C;  1Y1B A;  3OVO A;  1IY5 A;  1SGN I;  2GKV A;  2N52 A;  2WCY A;  1OMT A;  1CGI I;  2KCX A;  1MT1 A;  1YTP A;  2M5X A;  2SGD I;  1HPT A;  1SGQ I;  1M8B A;  2GKR I;  2KMO A;  2V53 A;  1OMU A;  1CSO I;  2NU2 I;  3QTL D;  3SEK C;  1IW4 A;  1BMO A;  1TBR R;  1HJA I;  3HH2 C; 
#chains in the Genus database with same CATH topology
 3TO9 A;  1TOT A;  1CGJ I;  2W0T A;  2XRC A;  2F3C I;  3UEJ A;  1ULK A;  4AML A;  1UVG A;  4HGU A;  3TJQ A;  2OVO A;  2LEO A;  2UVO A;  4UXH A;  7WGA A;  1W4R A;  2YUU A;  1FAQ A;  1Y8F A;  3OL0 A;  2JXD A;  2X52 A;  3BJI A;  1LR7 A;  2N71 A;  2QQC A;  1HDL A;  1K7V A;  1V1H A;  3QAH A;  1MJ9 A;  1XX6 A;  5E3R A;  1KBF A;  2GKT I;  4B6D A;  3E2I A;  3CXL A;  1CT2 I;  4MPI A;  4E1P A;  1KMA A;  1PCE A;  1SGD I;  2NU4 I;  2A20 A;  2ENZ A;  1SGY I;  1Y1C A;  1R0R I;  1X4S A;  4UXJ A;  2KMR A;  2DB6 A;  1SGE I;  2ORW A;  2V1C A;  1PTQ A;  2ARP F;  2OZU A;  5DAE A;  1TGS I;  5EX3 A;  1CHO I;  1OVO A;  1TUS A;  1BUS A;  1NXU A;  1RFH A;  2JW6 A;  1Z7K B;  2GVI A;  4SGB I;  3UGL A;  1CE3 A;  4L9M A;  2JA1 A;  2SGP I;  2V1C C;  3OXG A;  2P6A C;  1CT4 I;  3VE5 A;  1W3S A;  2SGF I;  1N13 A;  1TBQ R;  2QQE A;  1PTR A;  4OVO A;  1Q9B A;  3TO7 A;  3VDU A;  3VDP A;  5FUV A;  3GOX A;  2ORV A;  3FSY A;  1UVF A;  2QQD A;  4GI3 C;  1UUC A;  2NU3 I;  1WKX A;  1FY7 A;  2KMP A;  1PPF I;  3B4V C;  3R5B A;  2E5R A;  5FUX A;  3UOE A;  1IY6 A;  2DIP A;  1K7U A;  5HQ8 A;  2N17 A;  2CJS C;  9WGA A;  2ELI A;  1MJB A;  3SGQ I;  2CWF A;  2NU1 I;  5FUW A;  2L7X A;  4DNC A;  5HI7 A;  2N1A B;  3PDN A;  3R5D A;  1TUR A;  1H0Z A;  3R5A A;  1DS3 I;  1UHA A;  2JZM A;  5JHW C;  1P9G A;  2FNF X;  2SGE I;  5FUY A;  2RC4 A;  2PQ8 A;  2OU2 A;  3SGB I;  3FC3 A;  2UZ3 A;  1Z2I A;  2GIV A;  2KMQ A;  1DS2 I;  2NU0 I;  1CT0 I;  2DKV A;  2ROW A;  2JYY A;  3E59 A;  3MEK A;  4A24 A;  2VRW B;  2SGQ I;  2ERW A;  2Y0M A;  1TIH A;  4UXI A;  1WGC A;  2B0U C;  4JCV E;  1SGR I;  2ENN A;  1LR8 A;  1SGP I;  1NUB A;  1ULN A;  2L8E A;  2YQP A;  1V1I A;  2WVJ A;  2BUS A;  1FYB A;  1OYV I;  1M8C A;  2RIJ A;  1PJU A;  3RU0 A;  5CCM A;  5E3Q A;  1AN1 I;  2J87 A;  1XA6 A;  1LR9 A;  1YU6 C;  1XBT A;  1Y1B A;  3OVO A;  1FAR A;  1IY5 A;  1R79 A;  1SGN I;  2CWG A;  2GKV A;  1P9Z A;  2CWH A;  2N52 A;  1KBE A;  1OMT A;  1TBO A;  2QQ0 A;  2WCY A;  1CGI I;  1WGT A;  3R5C A;  1ULM A;  1U5K A;  2KCX A;  2E73 A;  2ODD A;  4FKD A;  5EX0 A;  3KY9 A;  2LUY A;  3TO6 A;  3UGI A;  1MT1 A;  1VDD A;  1YTP A;  2M5X A;  2B8T A;  2K9H A;  5J8C A;  2SGD I;  1HPT A;  1SGQ I;  3UFF A;  1K7T A;  2X3T A;  5CCL A;  1TBN A;  1S20 A;  2QPO A;  2LB7 A;  5J8F A;  4E1R A;  1M8B A;  2GKR I;  2KMO A;  3OXL A;  3OXF A;  2V53 A;  1OMU A;  3TOA A;  1CSO I;  2NU2 I;  3QTL D;  3SEK C;  1IW4 A;  3TOB A;  4WP4 A;  1BMO A;  2OD1 A;  1TBR R;  3UGD A;  1X74 A;  1HEV A;  1HJA I;  3QWP A;  3D00 A;  3HH2 C;  1WTJ A;  3FSX A;  5E3P A;  2J9R A;  2WGC A;  3UEY A;  1MJA A; 
#chains in the Genus database with same CATH homology
 1TOT A;  1CGJ I;  2W0T A;  2XRC A;  2F3C I;  3UEJ A;  1UVG A;  4HGU A;  3TJQ A;  2OVO A;  2LEO A;  4UXH A;  1W4R A;  2YUU A;  1FAQ A;  1Y8F A;  3OL0 A;  2JXD A;  3BJI A;  1LR7 A;  2N71 A;  2QQC A;  1HDL A;  1V1H A;  1XX6 A;  1KBF A;  2GKT I;  4B6D A;  3E2I A;  3CXL A;  1CT2 I;  4E1P A;  1KMA A;  1PCE A;  1SGD I;  2NU4 I;  2A20 A;  2ENZ A;  1SGY I;  1Y1C A;  1R0R I;  1X4S A;  4UXJ A;  2KMR A;  2DB6 A;  1SGE I;  2ORW A;  2V1C A;  1PTQ A;  2ARP F;  5DAE A;  5EX3 A;  1TGS I;  1CHO I;  1OVO A;  1TUS A;  1BUS A;  1RFH A;  2JW6 A;  1Z7K B;  2GVI A;  4SGB I;  3UGL A;  1CE3 A;  4L9M A;  2JA1 A;  2SGP I;  2V1C C;  3OXG A;  2P6A C;  1CT4 I;  3VE5 A;  1W3S A;  2SGF I;  1N13 A;  1TBQ R;  2QQE A;  1PTR A;  4OVO A;  3VDU A;  3GOX A;  3VDP A;  5FUV A;  2ORV A;  1UVF A;  2QQD A;  4GI3 C;  1UUC A;  2NU3 I;  2KMP A;  1PPF I;  3B4V C;  1IY6 A;  2E5R A;  5FUX A;  2DIP A;  5HQ8 A;  2N17 A;  2CJS C;  2ELI A;  3SGQ I;  2NU1 I;  5FUW A;  2L7X A;  5HI7 A;  2N1A B;  3PDN A;  1TUR A;  1H0Z A;  1DS3 I;  2JZM A;  5JHW C;  2FNF X;  2SGE I;  5FUY A;  3SGB I;  3FC3 A;  2UZ3 A;  2ROW A;  2KMQ A;  2NU0 I;  1DS2 I;  3E59 A;  1CT0 I;  4A24 A;  3MEK A;  2JYY A;  2VRW B;  2SGQ I;  2ERW A;  1TIH A;  4UXI A;  2B0U C;  4JCV E;  1SGR I;  2ENN A;  1LR8 A;  1SGP I;  1NUB A;  2L8E A;  2YQP A;  1V1I A;  2WVJ A;  2BUS A;  1FYB A;  1OYV I;  1M8C A;  1PJU A;  3RU0 A;  5CCM A;  1AN1 I;  2J87 A;  1XA6 A;  1LR9 A;  1YU6 C;  1XBT A;  1Y1B A;  3OVO A;  1FAR A;  1IY5 A;  1R79 A;  1SGN I;  2GKV A;  2N52 A;  1KBE A;  1OMT A;  1TBO A;  2QQ0 A;  2WCY A;  1CGI I;  1U5K A;  2KCX A;  2E73 A;  2ODD A;  4FKD A;  5EX0 A;  3KY9 A;  2LUY A;  3UGI A;  1MT1 A;  1VDD A;  1YTP A;  2M5X A;  2B8T A;  2K9H A;  2SGD I;  1HPT A;  1SGQ I;  3UFF A;  5CCL A;  1TBN A;  2QPO A;  4E1R A;  1M8B A;  2GKR I;  2KMO A;  3OXL A;  3OXF A;  2V53 A;  1OMU A;  1CSO I;  2NU2 I;  3QTL D;  3SEK C;  1IW4 A;  1BMO A;  2OD1 A;  1TBR R;  3UGD A;  1X74 A;  1HJA I;  3QWP A;  3D00 A;  3HH2 C;  2J9R A;  3UEY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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