4MPIA

Crystal structure of the chitin-binding module (cbm18) of a chitinase-like protein from hevea brasiliensis
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
44
structure length
44
Chain Sequence
b'MEQCGRQAGGALCPGGLCCSQYGWCANTPEYCGSGCQSQCDGGV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Comparative study of two GH19 chitinase-like proteins from Hevea brasiliensis, one exhibiting a novel carbohydrate-binding domain.
pubmed doi rcsb
molecule keywords Class I chitinase
source organism Hevea brasiliensis subsp. brasiliensis
molecule tags Sugar binding protein
total genus 13
structure length 44
sequence length 44
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4mpiA00
1K7UA 1WGTA 1WGCA 1HEVA 4MPIA 2UVOA 1K7TA 1UHAA 1P9GA 2CWGA 1ULKA 2DKVA 2X52A 4WP4A 1Q9BA 1K7VA 1WKXA 1ULMA 2X3TA 4AMLA 7WGAA 9WGAA 1ULNA 2WGCA 2LB7A 1P9ZA
chains in the Genus database with same CATH superfamily
2GKRI 2GVIA 5HI7A 1DS3I 3RU0A 1CHOI 1K7UA 3E2IA 1V1HA 2Y0MA 1M8BA 2SGPI 5J8FA 1PJUA 1CT0I 1WGCA 2NU3I 2OVOA 3OL0A 3UGLA 1FAQA 2FNFX 1LR9A 1HEVA 4A24A 2KMQA 2SGQI 1OVOA 3KY9A 1P9GA 3UOEA 2QQDA 5HQ8A 1XA6A 1SGDI 3TJQA 1Q9BA 2QPOA 1MJBA 1CT4I 1FY7A 1TIHA 2NU2I 2SGFI 1R79A 2ROWA 1U5KA 2RIJA 3HH2C 5J8CA 2ELIA 2JYYA 1TGSI 1XX6A 1TBRR 2B0UC 1MT1A 3SEKC 4UXIA 5FUYA 1ULNA 3FSXA 4UXHA 2OU2A 1CT2I 3OXFA 1TBNA 2LB7A 1BUSA 2WVJA 2E73A 1FYBA 4OVOA 1WTJA 2QQ0A 3CXLA 1H0ZA 2UZ3A 1CSOI 5E3PA 4GI3C 1LR8A 5DAEA 2GKTI 1Z2IA 2CJSC 5E3RA 4MPIA 1PCEA 1SGRI 1HJAI 2NU4I 4E1PA 1CGII 1UHAA 5CCMA 2LUYA 3FC3A 1N13A 1PPFI 1ULKA 3UFFA 1R0RI 1TBQR 2X52A 2CWFA 1K7VA 3FSYA 3UEJA 1UVFA 7WGAA 3VDUA 1IW4A 2JXDA 2E5RA 2GKVA 4UXJA 2VRWB 5JHWC 4FKDA 2WCYA 1Z7KB 3SGQI 2J9RA 4B6DA 3R5DA 2GIVA 1Y1CA 2CWHA 3UGDA 1YU6C 2A20A 1X74A 3OXGA 3R5CA 3E59A 1SGQI 2V1CA 1MJ9A 1P9ZA 2P6AC 3D00A 2OZUA 3TOBA 3VE5A 4E1RA 2KMRA 2L8EA 1NXUA 3BJIA 1SGNI 2NU0I 1UUCA 1HDLA 2V1CC 2SGDI 3OVOA 1VDDA 2JA1A 2QQEA 4DNCA 2KCXA 2LEOA 2KMPA 3TO9A 1MJAA 1K7TA 3VDPA 2PQ8A 1OMTA 2CWGA 4SGBI 1CE3A 2YUUA 1OYVI 1WKXA 2ARPF 2KMOA 2X3TA 2ERWA 3TO7A 4AMLA 3TOAA 2JZMA 2YQPA 1V1IA 1IY5A 9WGAA 1CGJI 1DS2I 2ODDA 3OXLA 1KMAA 1IY6A 1SGYI 5EX0A 1TURA 5CCLA 1TUSA 1FARA 4L9MA 1AN1I 1XBTA 2N71A 1PTRA 2WGCA 3R5BA 1S20A 3UGIA 2JW6A 1X4SA 2V53A 1KBEA 1W3SA 5FUXA 3MEKA 3QTLD 1YTPA 2L7XA 2N52A 3R5AA 2F3CI 2DB6A 4HGUA 1WGTA 2ORWA 1SGPI 1M8CA 3GOXA 2UVOA 2ENNA 2N17A 5FUVA 2OD1A 3UEYA 1LR7A 2XRCA 2BUSA 2DKVA 4WP4A 1HPTA 1RFHA 1ULMA 2J87A 2K9HA 1PTQA 2N1AB 3QAHA 2DIPA 1UVGA 2RC4A 2NU1I 3TO6A 1TBOA 5EX3A 3SGBI 2ORVA 1NUBA 1Y8FA 1SGEI 1Y1BA 2M5XA 2SGEI 1BMOA 1W4RA 1OMUA 2W0TA 3B4VC 1KBFA 2ENZA 4JCVE 5FUWA 2QQCA 3PDNA 5E3QA 2B8TA 1TOTA 3QWPA
chains in the Genus database with same CATH topology
1K7UA 1WGTA 1WGCA 1HEVA 4MPIA 2UVOA 1K7TA 1UHAA 1P9GA 2CWGA 1ULKA 2DKVA 2X52A 4WP4A 1Q9BA 1K7VA 1WKXA 1ULMA 2X3TA 4AMLA 7WGAA 9WGAA 1ULNA 2WGCA 2LB7A 1P9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7U A;  1WGT A;  1WGC A;  1HEV A;  4MPI A;  2UVO A;  1K7T A;  1UHA A;  1P9G A;  2CWG A;  1ULK A;  2DKV A;  2X52 A;  4WP4 A;  1Q9B A;  1K7V A;  1WKX A;  1ULM A;  2X3T A;  4AML A;  7WGA A;  9WGA A;  1ULN A;  2WGC A;  2LB7 A;  1P9Z A; 
#chains in the Genus database with same CATH topology
 2GKR I;  2GVI A;  5HI7 A;  1DS3 I;  3RU0 A;  1CHO I;  1K7U A;  3E2I A;  1V1H A;  2Y0M A;  1M8B A;  2SGP I;  5J8F A;  1PJU A;  1CT0 I;  1WGC A;  2NU3 I;  2OVO A;  3OL0 A;  3UGL A;  1FAQ A;  2FNF X;  1LR9 A;  1HEV A;  4A24 A;  2KMQ A;  2SGQ I;  1OVO A;  3KY9 A;  1P9G A;  3UOE A;  2QQD A;  5HQ8 A;  1XA6 A;  1SGD I;  3TJQ A;  1Q9B A;  2QPO A;  1MJB A;  1CT4 I;  1FY7 A;  1TIH A;  2NU2 I;  2SGF I;  1R79 A;  2ROW A;  1U5K A;  2RIJ A;  3HH2 C;  5J8C A;  2ELI A;  2JYY A;  1TGS I;  1XX6 A;  1TBR R;  2B0U C;  1MT1 A;  3SEK C;  4UXI A;  5FUY A;  1ULN A;  3FSX A;  4UXH A;  2OU2 A;  1CT2 I;  3OXF A;  1TBN A;  2LB7 A;  1BUS A;  2WVJ A;  2E73 A;  1FYB A;  4OVO A;  1WTJ A;  2QQ0 A;  3CXL A;  1H0Z A;  2UZ3 A;  1CSO I;  5E3P A;  4GI3 C;  1LR8 A;  5DAE A;  2GKT I;  1Z2I A;  2CJS C;  5E3R A;  4MPI A;  1PCE A;  1SGR I;  1HJA I;  2NU4 I;  4E1P A;  1CGI I;  1UHA A;  5CCM A;  2LUY A;  3FC3 A;  1N13 A;  1PPF I;  1ULK A;  3UFF A;  1R0R I;  1TBQ R;  2X52 A;  2CWF A;  1K7V A;  3FSY A;  3UEJ A;  1UVF A;  7WGA A;  3VDU A;  1IW4 A;  2JXD A;  2E5R A;  2GKV A;  4UXJ A;  2VRW B;  5JHW C;  4FKD A;  2WCY A;  1Z7K B;  3SGQ I;  2J9R A;  4B6D A;  3R5D A;  2GIV A;  1Y1C A;  2CWH A;  3UGD A;  1YU6 C;  2A20 A;  1X74 A;  3OXG A;  3R5C A;  3E59 A;  1SGQ I;  2V1C A;  1MJ9 A;  1P9Z A;  2P6A C;  3D00 A;  2OZU A;  3TOB A;  3VE5 A;  4E1R A;  2KMR A;  2L8E A;  1NXU A;  3BJI A;  1SGN I;  2NU0 I;  1UUC A;  1HDL A;  2V1C C;  2SGD I;  3OVO A;  1VDD A;  2JA1 A;  2QQE A;  4DNC A;  2KCX A;  2LEO A;  2KMP A;  3TO9 A;  1MJA A;  1K7T A;  3VDP A;  2PQ8 A;  1OMT A;  2CWG A;  4SGB I;  1CE3 A;  2YUU A;  1OYV I;  1WKX A;  2ARP F;  2KMO A;  2X3T A;  2ERW A;  3TO7 A;  4AML A;  3TOA A;  2JZM A;  2YQP A;  1V1I A;  1IY5 A;  9WGA A;  1CGJ I;  1DS2 I;  2ODD A;  3OXL A;  1KMA A;  1IY6 A;  1SGY I;  5EX0 A;  1TUR A;  5CCL A;  1TUS A;  1FAR A;  4L9M A;  1AN1 I;  1XBT A;  2N71 A;  1PTR A;  2WGC A;  3R5B A;  1S20 A;  3UGI A;  2JW6 A;  1X4S A;  2V53 A;  1KBE A;  1W3S A;  5FUX A;  3MEK A;  3QTL D;  1YTP A;  2L7X A;  2N52 A;  3R5A A;  2F3C I;  2DB6 A;  4HGU A;  1WGT A;  2ORW A;  1SGP I;  1M8C A;  3GOX A;  2UVO A;  2ENN A;  2N17 A;  5FUV A;  2OD1 A;  3UEY A;  1LR7 A;  2XRC A;  2BUS A;  2DKV A;  4WP4 A;  1HPT A;  1RFH A;  1ULM A;  2J87 A;  2K9H A;  1PTQ A;  2N1A B;  3QAH A;  2DIP A;  1UVG A;  2RC4 A;  2NU1 I;  3TO6 A;  1TBO A;  5EX3 A;  3SGB I;  2ORV A;  1NUB A;  1Y8F A;  1SGE I;  1Y1B A;  2M5X A;  2SGE I;  1BMO A;  1W4R A;  1OMU A;  2W0T A;  3B4V C;  1KBF A;  2ENZ A;  4JCV E;  5FUW A;  2QQC A;  3PDN A;  5E3Q A;  2B8T A;  1TOT A;  3QWP A; 
#chains in the Genus database with same CATH homology
 1K7U A;  1WGT A;  1WGC A;  1HEV A;  4MPI A;  2UVO A;  1K7T A;  1UHA A;  1P9G A;  2CWG A;  1ULK A;  2DKV A;  2X52 A;  4WP4 A;  1Q9B A;  1K7V A;  1WKX A;  1ULM A;  2X3T A;  4AML A;  7WGA A;  9WGA A;  1ULN A;  2WGC A;  2LB7 A;  1P9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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