4MPIA

Crystal structure of the chitin-binding module (cbm18) of a chitinase-like protein from hevea brasiliensis
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
44
structure length
44
Chain Sequence
MEQCGRQAGGALCPGGLCCSQYGWCANTPEYCGSGCQSQCDGGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
source organism Hevea brasiliensis subsp. brasiliensis
publication title Comparative study of two GH19 chitinase-like proteins from Hevea brasiliensis, one exhibiting a novel carbohydrate-binding domain.
pubmed doi rcsb
molecule keywords Class I chitinase
total genus 13
structure length 44
sequence length 44
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4mpiA00
1UHAA 1Q9BA 2WGCA 2CWGA 1P9GA 9WGAA 1ULKA 1P9ZA 2LB7A 2UVOA 4MPIA 1ULMA 1WGTA 1HEVA 1K7UA 4AMLA 1ULNA 7WGAA 4WP4A 1K7TA 2DKVA 1WGCA 1K7VA 2X3TA 2X52A 1WKXA
chains in the Genus database with same CATH superfamily
1SGDI 2ENZA 5CCLA 2SGFI 2V1CC 1PCEA 1SGEI 2M5XA 3TO7A 1BUSA 1SGYI 2RC4A 2CWGA 3TO9A 3RU0A 1FARA 1TIHA 1CE3A 2QPOA 1IW4A 1P9ZA 1SGQI 2UVOA 2V53A 2P6AC 4SGBI 4MPIA 3UGIA 2GKTI 1UVGA 1UVFA 3R5AA 2BUSA 1YU6C 1LR8A 2N52A 1Z2IA 2ARPF 1K7UA 1FY7A 2KMOA 1DS2I 1OMUA 1PTRA 1TBNA 1R79A 1Z7KB 2JYYA 2KMQA 1V1HA 3E2IA 1HJAI 1TURA 1TBQR 4E1PA 4E1RA 2X3TA 2YQPA 3VE5A 5J8FA 1TOTA 5FUYA 3KY9A 1SGNI 2E73A 2QQEA 1MT1A 4OVOA 3UGDA 3B4VC 2NU1I 2E5RA 2CJSC 5E3RA 1NUBA 3SEKC 1CSOI 4GI3C 2PQ8A 2SGPI 2J9RA 4DNCA 1P9GA 2N1AB 2N71A 2B0UC 2JXDA 9WGAA 1PTQA 2CWHA 2FNFX 2RIJA 1BMOA 5FUWA 1W3SA 1RFHA 2SGEI 2DB6A 2ORVA 2NU4I 4UXIA 4UXHA 2DIPA 1LR9A 1S20A 1ULMA 1Y1BA 1YTPA 2K9HA 2NU3I 4UXJA 2OU2A 3UFFA 2ROWA 1OVOA 2WVJA 3TJQA 4FKDA 1HEVA 2V1CA 1SGRI 1OYVI 1KBEA 1CT0I 5E3PA 1LR7A 3VDUA 2XRCA 7WGAA 4WP4A 3BJIA 2ERWA 2J87A 2YUUA 5EX0A 1TGSI 1Y1CA 3TOAA 2ENNA 1R0RI 2KCXA 1X74A 3QTLD 1M8BA 1K7VA 5EX3A 2X52A 1XX6A 1WGCA 1UHAA 1H0ZA 2OZUA 1MJ9A 3UEJA 2SGDI 5E3QA 5HI7A 2GKVA 2NU0I 4JCVE 5CCMA 1CGII 4B6DA 3GOXA 1KBFA 5FUXA 3R5DA 1W4RA 1OMTA 1PJUA 2VRWB 2LB7A 3UEYA 3OVOA 5DAEA 3FSXA 3FC3A 1N13A 3UOEA 2L8EA 2GKRI 2ODDA 1IY5A 4AMLA 2LUYA 2W0TA 1V1IA 2GIVA 2F3CI 1HDLA 1XBTA 3TOBA 2Y0MA 3MEKA 2L7XA 3OXFA 4HGUA 2ORWA 1K7TA 3OXGA 1CT4I 3HH2C 3OL0A 2ELIA 1SGPI 3CXLA 3E59A 1VDDA 1FAQA 2LEOA 2QQCA 2SGQI 3UGLA 1Q9BA 4A24A 2KMPA 1KMAA 2WGCA 1MJBA 2JW6A 1WTJA 1UUCA 1U5KA 3QAHA 2GVIA 1Y8FA 3OXLA 2NU2I 1IY6A 3R5BA 5JHWC 1DS3I 1ULKA 2N17A 1TUSA 3D00A 3QWPA 2CWFA 2JZMA 5FUVA 1CHOI 3SGBI 5HQ8A 3VDPA 1XA6A 1WGTA 3R5CA 1TBRR 1NXUA 1X4SA 1FYBA 4L9MA 1M8CA 1ULNA 2QQDA 2UZ3A 1AN1I 2KMRA 2WCYA 3PDNA 3FSYA 1CT2I 1HPTA 1MJAA 2OD1A 2QQ0A 1CGJI 1PPFI 1TBOA 3TO6A 2JA1A 2B8TA 2A20A 2DKVA 2OVOA 3SGQI 5J8CA 1WKXA
chains in the Genus database with same CATH topology
1UHAA 1Q9BA 2WGCA 2CWGA 1P9GA 9WGAA 1ULKA 1P9ZA 2LB7A 2UVOA 4MPIA 1ULMA 1WGTA 1HEVA 1K7UA 4AMLA 1ULNA 7WGAA 4WP4A 1K7TA 2DKVA 1WGCA 1K7VA 2X3TA 2X52A 1WKXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UHA A;  1Q9B A;  2WGC A;  2CWG A;  1P9G A;  9WGA A;  1ULK A;  1P9Z A;  2LB7 A;  2UVO A;  4MPI A;  1ULM A;  1WGT A;  1HEV A;  1K7U A;  4AML A;  1ULN A;  7WGA A;  4WP4 A;  1K7T A;  2DKV A;  1WGC A;  1K7V A;  2X3T A;  2X52 A;  1WKX A; 
#chains in the Genus database with same CATH topology
 1SGD I;  2ENZ A;  5CCL A;  2SGF I;  2V1C C;  1PCE A;  1SGE I;  2M5X A;  3TO7 A;  1BUS A;  1SGY I;  2RC4 A;  2CWG A;  3TO9 A;  3RU0 A;  1FAR A;  1TIH A;  1CE3 A;  2QPO A;  1IW4 A;  1P9Z A;  1SGQ I;  2UVO A;  2V53 A;  2P6A C;  4SGB I;  4MPI A;  3UGI A;  2GKT I;  1UVG A;  1UVF A;  3R5A A;  2BUS A;  1YU6 C;  1LR8 A;  2N52 A;  1Z2I A;  2ARP F;  1K7U A;  1FY7 A;  2KMO A;  1DS2 I;  1OMU A;  1PTR A;  1TBN A;  1R79 A;  1Z7K B;  2JYY A;  2KMQ A;  1V1H A;  3E2I A;  1HJA I;  1TUR A;  1TBQ R;  4E1P A;  4E1R A;  2X3T A;  2YQP A;  3VE5 A;  5J8F A;  1TOT A;  5FUY A;  3KY9 A;  1SGN I;  2E73 A;  2QQE A;  1MT1 A;  4OVO A;  3UGD A;  3B4V C;  2NU1 I;  2E5R A;  2CJS C;  5E3R A;  1NUB A;  3SEK C;  1CSO I;  4GI3 C;  2PQ8 A;  2SGP I;  2J9R A;  4DNC A;  1P9G A;  2N1A B;  2N71 A;  2B0U C;  2JXD A;  9WGA A;  1PTQ A;  2CWH A;  2FNF X;  2RIJ A;  1BMO A;  5FUW A;  1W3S A;  1RFH A;  2SGE I;  2DB6 A;  2ORV A;  2NU4 I;  4UXI A;  4UXH A;  2DIP A;  1LR9 A;  1S20 A;  1ULM A;  1Y1B A;  1YTP A;  2K9H A;  2NU3 I;  4UXJ A;  2OU2 A;  3UFF A;  2ROW A;  1OVO A;  2WVJ A;  3TJQ A;  4FKD A;  1HEV A;  2V1C A;  1SGR I;  1OYV I;  1KBE A;  1CT0 I;  5E3P A;  1LR7 A;  3VDU A;  2XRC A;  7WGA A;  4WP4 A;  3BJI A;  2ERW A;  2J87 A;  2YUU A;  5EX0 A;  1TGS I;  1Y1C A;  3TOA A;  2ENN A;  1R0R I;  2KCX A;  1X74 A;  3QTL D;  1M8B A;  1K7V A;  5EX3 A;  2X52 A;  1XX6 A;  1WGC A;  1UHA A;  1H0Z A;  2OZU A;  1MJ9 A;  3UEJ A;  2SGD I;  5E3Q A;  5HI7 A;  2GKV A;  2NU0 I;  4JCV E;  5CCM A;  1CGI I;  4B6D A;  3GOX A;  1KBF A;  5FUX A;  3R5D A;  1W4R A;  1OMT A;  1PJU A;  2VRW B;  2LB7 A;  3UEY A;  3OVO A;  5DAE A;  3FSX A;  3FC3 A;  1N13 A;  3UOE A;  2L8E A;  2GKR I;  2ODD A;  1IY5 A;  4AML A;  2LUY A;  2W0T A;  1V1I A;  2GIV A;  2F3C I;  1HDL A;  1XBT A;  3TOB A;  2Y0M A;  3MEK A;  2L7X A;  3OXF A;  4HGU A;  2ORW A;  1K7T A;  3OXG A;  1CT4 I;  3HH2 C;  3OL0 A;  2ELI A;  1SGP I;  3CXL A;  3E59 A;  1VDD A;  1FAQ A;  2LEO A;  2QQC A;  2SGQ I;  3UGL A;  1Q9B A;  4A24 A;  2KMP A;  1KMA A;  2WGC A;  1MJB A;  2JW6 A;  1WTJ A;  1UUC A;  1U5K A;  3QAH A;  2GVI A;  1Y8F A;  3OXL A;  2NU2 I;  1IY6 A;  3R5B A;  5JHW C;  1DS3 I;  1ULK A;  2N17 A;  1TUS A;  3D00 A;  3QWP A;  2CWF A;  2JZM A;  5FUV A;  1CHO I;  3SGB I;  5HQ8 A;  3VDP A;  1XA6 A;  1WGT A;  3R5C A;  1TBR R;  1NXU A;  1X4S A;  1FYB A;  4L9M A;  1M8C A;  1ULN A;  2QQD A;  2UZ3 A;  1AN1 I;  2KMR A;  2WCY A;  3PDN A;  3FSY A;  1CT2 I;  1HPT A;  1MJA A;  2OD1 A;  2QQ0 A;  1CGJ I;  1PPF I;  1TBO A;  3TO6 A;  2JA1 A;  2B8T A;  2A20 A;  2DKV A;  2OVO A;  3SGQ I;  5J8C A;  1WKX A; 
#chains in the Genus database with same CATH homology
 1UHA A;  1Q9B A;  2WGC A;  2CWG A;  1P9G A;  9WGA A;  1ULK A;  1P9Z A;  2LB7 A;  2UVO A;  4MPI A;  1ULM A;  1WGT A;  1HEV A;  1K7U A;  4AML A;  1ULN A;  7WGA A;  4WP4 A;  1K7T A;  2DKV A;  1WGC A;  1K7V A;  2X3T A;  2X52 A;  1WKX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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