4AMLA

Crystal structure of wheat germ agglutinin isolectin 1 in complex with glycosylurethan
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
171
structure length
171
Chain Sequence
b'ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords AGGLUTININ ISOLECTIN 1
publication title Structural Basis of Multivalent Binding to Wheat Germ Agglutinin.
pubmed doi rcsb
molecule tags Sugar binding protein
total genus 48
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA04
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA01
2LB7A 1ULMA 1UHAA 1ULNA 1K7UA 2UVOA 1WGCA 4AMLA 1Q9BA 7WGAA 1ULKA 4MPIA 2X3TA 1P9GA 2WGCA 1WKXA 4WP4A 1HEVA 2CWGA 1P9ZA 1K7VA 1K7TA 2DKVA 9WGAA 1WGTA 2X52A
chains in the Genus database with same CATH superfamily
1FARA 2ROWA 1FYBA 3TO7A 2LB7A 1XA6A 2LUYA 1UUCA 2CWHA 5FUVA 3HH2C 1PTQA 1UHAA 1M8CA 1DS3I 2CWFA 1PTRA 1ULNA 2JXDA 3VDUA 4AMLA 2WCYA 1BUSA 5HI7A 2NU4I 3MEKA 4HGUA 3TOBA 2GKVA 1HDLA 1PJUA 1R79A 4MPIA 3VDPA 2YQPA 3FC3A 1WKXA 2GVIA 2LEOA 1SGNI 2N17A 1PPFI 2FNFX 1KBEA 1SGEI 2NU3I 4GI3C 5J8FA 3R5BA 1AN1I 1K7TA 4UXHA 2KCXA 1LR7A 2QQ0A 3TO9A 4DNCA 2JYYA 3BJIA 2N71A 2RIJA 3RU0A 3UEJA 1VDDA 3OVOA 3CXLA 1LR8A 3FSYA 4UXIA 5FUWA 1FY7A 3PDNA 1Y1CA 3R5AA 2OD1A 1IY6A 2XRCA 4OVOA 3UGDA 2PQ8A 3OXLA 1WGCA 5EX0A 2ORVA 2F3CI 3UEYA 3VE5A 1CGII 1TBNA 2BUSA 2DB6A 2UZ3A 3QAHA 1ULKA 5E3PA 3TO6A 5J8CA 2KMOA 1P9GA 2WGCA 3QWPA 1UVFA 1TOTA 2DIPA 2SGQI 1W4RA 2KMQA 2GKRI 2P6AC 3E2IA 1X74A 4B6DA 1NUBA 2GKTI 1K7VA 5E3QA 2DKVA 1OMTA 4E1PA 2SGPI 2E73A 2YUUA 1N13A 1TBRR 2ENZA 3SGBI 2W0TA 3R5DA 3GOXA 2L8EA 1KMAA 1Y1BA 1TURA 1UVGA 5CCLA 1KBFA 2CJSC 1YU6C 1M8BA 1ULMA 2ODDA 1XX6A 2OZUA 3KY9A 3OXFA 1OVOA 1DS2I 1MT1A 2SGDI 2V1CA 1SGYI 2E5RA 2NU2I 1K7UA 1HPTA 2VRWB 2QQCA 1PCEA 1Y8FA 2J87A 2UVOA 1FAQA 2B0UC 1OMUA 3SGQI 1HJAI 2ARPF 2N52A 2SGEI 4JCVE 2NU0I 4SGBI 1WTJA 2QPOA 2ENNA 2N1AB 1RFHA 1SGPI 1V1IA 1SGRI 2B8TA 5JHWC 1HEVA 1Z7KB 3UGLA 2NU1I 4FKDA 1V1HA 3SEKC 3R5CA 3TOAA 1W3SA 1SGQI 1WGTA 4E1RA 2QQDA 1H0ZA 3FSXA 1S20A 4L9MA 1CE3A 2ELIA 5DAEA 3UGIA 1CT2I 1SGDI 1U5KA 1XBTA 2ORWA 1CGJI 1TBOA 1TUSA 1MJBA 1X4SA 1CSOI 1TIHA 2JA1A 4UXJA 3TJQA 2V53A 1TGSI 5HQ8A 2OVOA 3OL0A 2QQEA 1Q9BA 3QTLD 1IW4A 1CHOI 4A24A 7WGAA 1IY5A 1YTPA 2V1CC 2Y0MA 2X3TA 5EX3A 2JW6A 1CT4I 1TBQR 2RC4A 2M5XA 4WP4A 3UOEA 1BMOA 2KMRA 2L7XA 2WVJA 1CT0I 2CWGA 3E59A 1P9ZA 1OYVI 2JZMA 1LR9A 2K9HA 2J9RA 5FUXA 3UFFA 3B4VC 2KMPA 2ERWA 3D00A 2GIVA 2OU2A 2SGFI 5E3RA 1MJAA 9WGAA 2X52A 1NXUA 1Z2IA 3OXGA 2A20A 5CCMA 5FUYA 1MJ9A 1R0RI
chains in the Genus database with same CATH topology
2LB7A 1ULMA 1UHAA 1ULNA 1K7UA 2UVOA 1WGCA 4AMLA 1Q9BA 7WGAA 1ULKA 4MPIA 2X3TA 1P9GA 2WGCA 1WKXA 4WP4A 1HEVA 2CWGA 1P9ZA 1K7VA 1K7TA 2DKVA 9WGAA 1WGTA 2X52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LB7 A;  1ULM A;  1UHA A;  1ULN A;  1K7U A;  2UVO A;  1WGC A;  4AML A;  1Q9B A;  7WGA A;  1ULK A;  4MPI A;  2X3T A;  1P9G A;  2WGC A;  1WKX A;  4WP4 A;  1HEV A;  2CWG A;  1P9Z A;  1K7V A;  1K7T A;  2DKV A;  9WGA A;  1WGT A;  2X52 A; 
#chains in the Genus database with same CATH topology
 1FAR A;  2ROW A;  1FYB A;  3TO7 A;  2LB7 A;  1XA6 A;  2LUY A;  1UUC A;  2CWH A;  5FUV A;  3HH2 C;  1PTQ A;  1UHA A;  1M8C A;  1DS3 I;  2CWF A;  1PTR A;  1ULN A;  2JXD A;  3VDU A;  4AML A;  2WCY A;  1BUS A;  5HI7 A;  2NU4 I;  3MEK A;  4HGU A;  3TOB A;  2GKV A;  1HDL A;  1PJU A;  1R79 A;  4MPI A;  3VDP A;  2YQP A;  3FC3 A;  1WKX A;  2GVI A;  2LEO A;  1SGN I;  2N17 A;  1PPF I;  2FNF X;  1KBE A;  1SGE I;  2NU3 I;  4GI3 C;  5J8F A;  3R5B A;  1AN1 I;  1K7T A;  4UXH A;  2KCX A;  1LR7 A;  2QQ0 A;  3TO9 A;  4DNC A;  2JYY A;  3BJI A;  2N71 A;  2RIJ A;  3RU0 A;  3UEJ A;  1VDD A;  3OVO A;  3CXL A;  1LR8 A;  3FSY A;  4UXI A;  5FUW A;  1FY7 A;  3PDN A;  1Y1C A;  3R5A A;  2OD1 A;  1IY6 A;  2XRC A;  4OVO A;  3UGD A;  2PQ8 A;  3OXL A;  1WGC A;  5EX0 A;  2ORV A;  2F3C I;  3UEY A;  3VE5 A;  1CGI I;  1TBN A;  2BUS A;  2DB6 A;  2UZ3 A;  3QAH A;  1ULK A;  5E3P A;  3TO6 A;  5J8C A;  2KMO A;  1P9G A;  2WGC A;  3QWP A;  1UVF A;  1TOT A;  2DIP A;  2SGQ I;  1W4R A;  2KMQ A;  2GKR I;  2P6A C;  3E2I A;  1X74 A;  4B6D A;  1NUB A;  2GKT I;  1K7V A;  5E3Q A;  2DKV A;  1OMT A;  4E1P A;  2SGP I;  2E73 A;  2YUU A;  1N13 A;  1TBR R;  2ENZ A;  3SGB I;  2W0T A;  3R5D A;  3GOX A;  2L8E A;  1KMA A;  1Y1B A;  1TUR A;  1UVG A;  5CCL A;  1KBF A;  2CJS C;  1YU6 C;  1M8B A;  1ULM A;  2ODD A;  1XX6 A;  2OZU A;  3KY9 A;  3OXF A;  1OVO A;  1DS2 I;  1MT1 A;  2SGD I;  2V1C A;  1SGY I;  2E5R A;  2NU2 I;  1K7U A;  1HPT A;  2VRW B;  2QQC A;  1PCE A;  1Y8F A;  2J87 A;  2UVO A;  1FAQ A;  2B0U C;  1OMU A;  3SGQ I;  1HJA I;  2ARP F;  2N52 A;  2SGE I;  4JCV E;  2NU0 I;  4SGB I;  1WTJ A;  2QPO A;  2ENN A;  2N1A B;  1RFH A;  1SGP I;  1V1I A;  1SGR I;  2B8T A;  5JHW C;  1HEV A;  1Z7K B;  3UGL A;  2NU1 I;  4FKD A;  1V1H A;  3SEK C;  3R5C A;  3TOA A;  1W3S A;  1SGQ I;  1WGT A;  4E1R A;  2QQD A;  1H0Z A;  3FSX A;  1S20 A;  4L9M A;  1CE3 A;  2ELI A;  5DAE A;  3UGI A;  1CT2 I;  1SGD I;  1U5K A;  1XBT A;  2ORW A;  1CGJ I;  1TBO A;  1TUS A;  1MJB A;  1X4S A;  1CSO I;  1TIH A;  2JA1 A;  4UXJ A;  3TJQ A;  2V53 A;  1TGS I;  5HQ8 A;  2OVO A;  3OL0 A;  2QQE A;  1Q9B A;  3QTL D;  1IW4 A;  1CHO I;  4A24 A;  7WGA A;  1IY5 A;  1YTP A;  2V1C C;  2Y0M A;  2X3T A;  5EX3 A;  2JW6 A;  1CT4 I;  1TBQ R;  2RC4 A;  2M5X A;  4WP4 A;  3UOE A;  1BMO A;  2KMR A;  2L7X A;  2WVJ A;  1CT0 I;  2CWG A;  3E59 A;  1P9Z A;  1OYV I;  2JZM A;  1LR9 A;  2K9H A;  2J9R A;  5FUX A;  3UFF A;  3B4V C;  2KMP A;  2ERW A;  3D00 A;  2GIV A;  2OU2 A;  2SGF I;  5E3R A;  1MJA A;  9WGA A;  2X52 A;  1NXU A;  1Z2I A;  3OXG A;  2A20 A;  5CCM A;  5FUY A;  1MJ9 A;  1R0R I; 
#chains in the Genus database with same CATH homology
 2LB7 A;  1ULM A;  1UHA A;  1ULN A;  1K7U A;  2UVO A;  1WGC A;  4AML A;  1Q9B A;  7WGA A;  1ULK A;  4MPI A;  2X3T A;  1P9G A;  2WGC A;  1WKX A;  4WP4 A;  1HEV A;  2CWG A;  1P9Z A;  1K7V A;  1K7T A;  2DKV A;  9WGA A;  1WGT A;  2X52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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