4AMLA

Crystal structure of wheat germ agglutinin isolectin 1 in complex with glycosylurethan
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords AGGLUTININ ISOLECTIN 1
publication title Structural Basis of Multivalent Binding to Wheat Germ Agglutinin.
pubmed doi rcsb
molecule tags Sugar binding protein
total genus 48
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA04
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA01
1P9GA 2X52A 1UHAA 1ULMA 2WGCA 1WGCA 4MPIA 1ULKA 9WGAA 2UVOA 2CWGA 4WP4A 4AMLA 2LB7A 1K7VA 2X3TA 1HEVA 1WGTA 1K7UA 7WGAA 2DKVA 1K7TA 1Q9BA 1WKXA 1ULNA 1P9ZA
chains in the Genus database with same CATH superfamily
2FNFX 3OL0A 3GOXA 3E59A 1SGRI 5JHWC 3SEKC 1KMAA 2M5XA 1FYBA 1OMUA 1DS2I 3FC3A 2NU4I 3BJIA 1MJAA 1Y1CA 9WGAA 1W4RA 3FSYA 1S20A 2CWGA 2N1AB 3FSXA 2YQPA 1TIHA 5HQ8A 5J8FA 2SGFI 2SGDI 3PDNA 2GKVA 1NUBA 3R5BA 2CJSC 2ENNA 1TBNA 2GIVA 1MJBA 3TJQA 1R79A 2KMOA 2RC4A 3OVOA 5FUYA 3D00A 4DNCA 1K7UA 1BMOA 1M8BA 1OMTA 1LR9A 2NU3I 2ELIA 4FKDA 2DB6A 3UOEA 2E5RA 3HH2C 2N52A 3OXGA 3UGDA 1MJ9A 1TOTA 3KY9A 1SGQI 3TOAA 2NU2I 3CXLA 2E73A 4HGUA 5FUWA 3B4VC 2F3CI 4UXHA 5HI7A 1AN1I 1SGEI 1Y1BA 2ROWA 3QAHA 3R5DA 1IY5A 1CGJI 1TBOA 1U5KA 1YTPA 2JW6A 1IY6A 2B8TA 2GKRI 2LEOA 3MEKA 4SGBI 2QPOA 5J8CA 1H0ZA 2JZMA 1WGCA 2ENZA 1ULKA 1UUCA 1TBRR 2JA1A 5FUVA 1TBQR 1HJAI 2V1CC 2YUUA 1XA6A 2JXDA 1UVGA 4AMLA 1K7VA 3UFFA 2SGEI 2GVIA 4OVOA 1WTJA 2W0TA 2ORVA 1TGSI 1Z7KB 4JCVE 1CT0I 1WGTA 1CSOI 5E3QA 2RIJA 3SGQI 1SGDI 2Y0MA 3TO6A 2N17A 2B0UC 7WGAA 4A24A 1CGII 1W3SA 4E1PA 2DIPA 2KMRA 2KMPA 3VDPA 1LR8A 1BUSA 5FUXA 1P9ZA 3OXLA 1VDDA 2ODDA 1P9GA 1YU6C 1PTRA 5DAEA 2OU2A 2WVJA 2GKTI 2NU0I 2X52A 3QTLD 1OVOA 3VDUA 3VE5A 1FAQA 1SGNI 2ARPF 2UZ3A 1V1IA 4UXIA 2P6AC 1ULMA 2BUSA 2QQ0A 4MPIA 3UGIA 1KBFA 1PJUA 2OD1A 1UVFA 4WP4A 1PPFI 1OYVI 2ERWA 5CCLA 3SGBI 3R5CA 3OXFA 3UEJA 4E1RA 3R5AA 1CHOI 2QQEA 1HDLA 2V1CA 1CT4I 1FY7A 2SGPI 3QWPA 3RU0A 2QQCA 2L7XA 1Z2IA 3TO7A 2CWHA 1HPTA 1WKXA 4UXJA 3E2IA 2ORWA 2WCYA 2KMQA 2XRCA 1TUSA 2LUYA 2J87A 4L9MA 5CCMA 5E3RA 2VRWB 1X74A 3UGLA 1PCEA 1KBEA 1UHAA 2JYYA 2K9HA 1X4SA 2WGCA 2UVOA 1V1HA 1N13A 2N71A 3TO9A 5EX0A 2OZUA 1M8CA 1RFHA 2PQ8A 1DS3I 2LB7A 4B6DA 2X3TA 2CWFA 2A20A 2KCXA 1XX6A 1SGYI 1HEVA 1LR7A 2SGQI 2OVOA 1XBTA 5EX3A 2V53A 1Y8FA 2NU1I 1R0RI 5E3PA 2DKVA 1K7TA 1NXUA 1Q9BA 4GI3C 1FARA 3UEYA 1SGPI 2L8EA 2QQDA 1CE3A 1MT1A 1IW4A 2J9RA 1ULNA 1PTQA 3TOBA 1CT2I 1TURA
chains in the Genus database with same CATH topology
1P9GA 2X52A 1UHAA 1ULMA 2WGCA 1WGCA 4MPIA 1ULKA 9WGAA 2UVOA 2CWGA 4WP4A 4AMLA 2LB7A 1K7VA 2X3TA 1HEVA 1WGTA 1K7UA 7WGAA 2DKVA 1K7TA 1Q9BA 1WKXA 1ULNA 1P9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P9G A;  2X52 A;  1UHA A;  1ULM A;  2WGC A;  1WGC A;  4MPI A;  1ULK A;  9WGA A;  2UVO A;  2CWG A;  4WP4 A;  4AML A;  2LB7 A;  1K7V A;  2X3T A;  1HEV A;  1WGT A;  1K7U A;  7WGA A;  2DKV A;  1K7T A;  1Q9B A;  1WKX A;  1ULN A;  1P9Z A; 
#chains in the Genus database with same CATH topology
 2FNF X;  3OL0 A;  3GOX A;  3E59 A;  1SGR I;  5JHW C;  3SEK C;  1KMA A;  2M5X A;  1FYB A;  1OMU A;  1DS2 I;  3FC3 A;  2NU4 I;  3BJI A;  1MJA A;  1Y1C A;  9WGA A;  1W4R A;  3FSY A;  1S20 A;  2CWG A;  2N1A B;  3FSX A;  2YQP A;  1TIH A;  5HQ8 A;  5J8F A;  2SGF I;  2SGD I;  3PDN A;  2GKV A;  1NUB A;  3R5B A;  2CJS C;  2ENN A;  1TBN A;  2GIV A;  1MJB A;  3TJQ A;  1R79 A;  2KMO A;  2RC4 A;  3OVO A;  5FUY A;  3D00 A;  4DNC A;  1K7U A;  1BMO A;  1M8B A;  1OMT A;  1LR9 A;  2NU3 I;  2ELI A;  4FKD A;  2DB6 A;  3UOE A;  2E5R A;  3HH2 C;  2N52 A;  3OXG A;  3UGD A;  1MJ9 A;  1TOT A;  3KY9 A;  1SGQ I;  3TOA A;  2NU2 I;  3CXL A;  2E73 A;  4HGU A;  5FUW A;  3B4V C;  2F3C I;  4UXH A;  5HI7 A;  1AN1 I;  1SGE I;  1Y1B A;  2ROW A;  3QAH A;  3R5D A;  1IY5 A;  1CGJ I;  1TBO A;  1U5K A;  1YTP A;  2JW6 A;  1IY6 A;  2B8T A;  2GKR I;  2LEO A;  3MEK A;  4SGB I;  2QPO A;  5J8C A;  1H0Z A;  2JZM A;  1WGC A;  2ENZ A;  1ULK A;  1UUC A;  1TBR R;  2JA1 A;  5FUV A;  1TBQ R;  1HJA I;  2V1C C;  2YUU A;  1XA6 A;  2JXD A;  1UVG A;  4AML A;  1K7V A;  3UFF A;  2SGE I;  2GVI A;  4OVO A;  1WTJ A;  2W0T A;  2ORV A;  1TGS I;  1Z7K B;  4JCV E;  1CT0 I;  1WGT A;  1CSO I;  5E3Q A;  2RIJ A;  3SGQ I;  1SGD I;  2Y0M A;  3TO6 A;  2N17 A;  2B0U C;  7WGA A;  4A24 A;  1CGI I;  1W3S A;  4E1P A;  2DIP A;  2KMR A;  2KMP A;  3VDP A;  1LR8 A;  1BUS A;  5FUX A;  1P9Z A;  3OXL A;  1VDD A;  2ODD A;  1P9G A;  1YU6 C;  1PTR A;  5DAE A;  2OU2 A;  2WVJ A;  2GKT I;  2NU0 I;  2X52 A;  3QTL D;  1OVO A;  3VDU A;  3VE5 A;  1FAQ A;  1SGN I;  2ARP F;  2UZ3 A;  1V1I A;  4UXI A;  2P6A C;  1ULM A;  2BUS A;  2QQ0 A;  4MPI A;  3UGI A;  1KBF A;  1PJU A;  2OD1 A;  1UVF A;  4WP4 A;  1PPF I;  1OYV I;  2ERW A;  5CCL A;  3SGB I;  3R5C A;  3OXF A;  3UEJ A;  4E1R A;  3R5A A;  1CHO I;  2QQE A;  1HDL A;  2V1C A;  1CT4 I;  1FY7 A;  2SGP I;  3QWP A;  3RU0 A;  2QQC A;  2L7X A;  1Z2I A;  3TO7 A;  2CWH A;  1HPT A;  1WKX A;  4UXJ A;  3E2I A;  2ORW A;  2WCY A;  2KMQ A;  2XRC A;  1TUS A;  2LUY A;  2J87 A;  4L9M A;  5CCM A;  5E3R A;  2VRW B;  1X74 A;  3UGL A;  1PCE A;  1KBE A;  1UHA A;  2JYY A;  2K9H A;  1X4S A;  2WGC A;  2UVO A;  1V1H A;  1N13 A;  2N71 A;  3TO9 A;  5EX0 A;  2OZU A;  1M8C A;  1RFH A;  2PQ8 A;  1DS3 I;  2LB7 A;  4B6D A;  2X3T A;  2CWF A;  2A20 A;  2KCX A;  1XX6 A;  1SGY I;  1HEV A;  1LR7 A;  2SGQ I;  2OVO A;  1XBT A;  5EX3 A;  2V53 A;  1Y8F A;  2NU1 I;  1R0R I;  5E3P A;  2DKV A;  1K7T A;  1NXU A;  1Q9B A;  4GI3 C;  1FAR A;  3UEY A;  1SGP I;  2L8E A;  2QQD A;  1CE3 A;  1MT1 A;  1IW4 A;  2J9R A;  1ULN A;  1PTQ A;  3TOB A;  1CT2 I;  1TUR A; 
#chains in the Genus database with same CATH homology
 1P9G A;  2X52 A;  1UHA A;  1ULM A;  2WGC A;  1WGC A;  4MPI A;  1ULK A;  9WGA A;  2UVO A;  2CWG A;  4WP4 A;  4AML A;  2LB7 A;  1K7V A;  2X3T A;  1HEV A;  1WGT A;  1K7U A;  7WGA A;  2DKV A;  1K7T A;  1Q9B A;  1WKX A;  1ULN A;  1P9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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