4AMLA

Crystal structure of wheat germ agglutinin isolectin 1 in complex with glycosylurethan
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords AGGLUTININ ISOLECTIN 1
publication title Structural Basis of Multivalent Binding to Wheat Germ Agglutinin.
pubmed doi rcsb
total genus 48
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA04
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 4amlA01
2X52A 1ULNA 1WGTA 1WKXA 2WGCA 1ULKA 1WGCA 4WP4A 1UHAA 1HEVA 1K7VA 2CWGA 1K7TA 1K7UA 1Q9BA 1ULMA 7WGAA 2X3TA 4AMLA 1P9ZA 1P9GA 4MPIA 2UVOA 9WGAA 2LB7A 2DKVA
chains in the Genus database with same CATH superfamily
2CJSC 2X52A 1FARA 1ULNA 1TBNA 1M8CA 1NXUA 1ULKA 1CGII 4WP4A 2FNFX 3OXLA 3RU0A 1PTQA 5E3RA 1Y1CA 1UHAA 1CGJI 3D00A 3R5DA 3PDNA 1TOTA 2QQEA 3QWPA 1OMTA 3UEJA 4E1PA 1FY7A 2L8EA 3TO9A 3UGLA 3BJIA 2DB6A 5FUXA 1CE3A 2ARPF 1XA6A 2VRWB 1ULMA 1SGEI 5CCLA 5DAEA 1PTRA 1V1IA 2OVOA 3E59A 2N71A 2NU1I 3UOEA 1P9GA 4AMLA 2N52A 2B0UC 1MJAA 2JA1A 2GVIA 2ORWA 2UVOA 4MPIA 1KMAA 2NU2I 1UVFA 1S20A 1TURA 1XX6A 1W3SA 2QQ0A 2ELIA 2YUUA 2DKVA 1MJBA 5E3PA 2J87A 3SEKC 2PQ8A 1DS2I 1UUCA 2B8TA 2N17A 2WGCA 2V53A 3OXGA 1CT4I 1X4SA 2OU2A 1FYBA 1OVOA 2LUYA 1V1HA 3QTLD 4HGUA 1OYVI 2ORVA 1LR7A 2OD1A 5J8CA 2CWGA 1TBRR 2JW6A 3R5BA 1WTJA 1SGPI 2QQCA 1SGRI 1YU6C 1XBTA 2V1CA 1TIHA 1MT1A 2BUSA 2YQPA 3FSYA 3R5CA 3E2IA 2P6AC 7WGAA 1TUSA 2ENNA 3B4VC 3FSXA 2GKRI 2KCXA 1P9ZA 3SGQI 4UXIA 1X74A 1BUSA 1HPTA 2L7XA 1RFHA 2WVJA 2ERWA 5EX3A 1OMUA 2LB7A 1PPFI 2V1CC 2UZ3A 3OL0A 1W4RA 2SGPI 2JZMA 1UVGA 1NUBA 1IY5A 5EX0A 1TBQR 2JXDA 4OVOA 1BMOA 1CHOI 1PJUA 3R5AA 3SGBI 2KMPA 3UGDA 2CWFA 2DIPA 3TO7A 2KMRA 2E73A 2F3CI 2OZUA 2GKTI 2W0TA 2SGDI 1HDLA 1K7TA 1Q9BA 3QAHA 4JCVE 3UGIA 1IW4A 2K9HA 1KBEA 2JYYA 2E5RA 1TBOA 3TOBA 1FAQA 2SGQI 1LR8A 3HH2C 2X3TA 1H0ZA 4UXJA 3TO6A 1CT2I 1KBFA 2A20A 1HJAI 2XRCA 2SGEI 2CWHA 3GOXA 1Y8FA 2GKVA 1N13A 2KMQA 1VDDA 1Z2IA 3CXLA 5HI7A 2M5XA 1WGTA 1WKXA 1Z7KB 3KY9A 1WGCA 3OVOA 1SGDI 3TJQA 4B6DA 2RIJA 4FKDA 2QQDA 1CT0I 1SGYI 3MEKA 1M8BA 3VDUA 1HEVA 2QPOA 3OXFA 1K7VA 4GI3C 3UEYA 5CCMA 5FUVA 1YTPA 1K7UA 2N1AB 2WCYA 2GIVA 2NU0I 2SGFI 1PCEA 5E3QA 2Y0MA 5HQ8A 3FC3A 2ENZA 1SGQI 1R79A 2ROWA 2LEOA 3TOAA 3UFFA 1CSOI 3VDPA 4DNCA 3VE5A 1MJ9A 1DS3I 4L9MA 4E1RA 1SGNI 4UXHA 9WGAA 1IY6A 2J9RA 1U5KA 2RC4A 5FUYA 2NU3I 5JHWC 1LR9A 4SGBI 1AN1I 4A24A 2ODDA 5J8FA 2KMOA 1R0RI 1Y1BA 2NU4I 1TGSI 5FUWA
chains in the Genus database with same CATH topology
2X52A 1ULNA 1WGTA 1WKXA 2WGCA 1ULKA 1WGCA 4WP4A 1UHAA 1HEVA 1K7VA 2CWGA 1K7TA 1K7UA 1Q9BA 1ULMA 7WGAA 2X3TA 4AMLA 1P9ZA 1P9GA 4MPIA 2UVOA 9WGAA 2LB7A 2DKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X52 A;  1ULN A;  1WGT A;  1WKX A;  2WGC A;  1ULK A;  1WGC A;  4WP4 A;  1UHA A;  1HEV A;  1K7V A;  2CWG A;  1K7T A;  1K7U A;  1Q9B A;  1ULM A;  7WGA A;  2X3T A;  4AML A;  1P9Z A;  1P9G A;  4MPI A;  2UVO A;  9WGA A;  2LB7 A;  2DKV A; 
#chains in the Genus database with same CATH topology
 2CJS C;  2X52 A;  1FAR A;  1ULN A;  1TBN A;  1M8C A;  1NXU A;  1ULK A;  1CGI I;  4WP4 A;  2FNF X;  3OXL A;  3RU0 A;  1PTQ A;  5E3R A;  1Y1C A;  1UHA A;  1CGJ I;  3D00 A;  3R5D A;  3PDN A;  1TOT A;  2QQE A;  3QWP A;  1OMT A;  3UEJ A;  4E1P A;  1FY7 A;  2L8E A;  3TO9 A;  3UGL A;  3BJI A;  2DB6 A;  5FUX A;  1CE3 A;  2ARP F;  1XA6 A;  2VRW B;  1ULM A;  1SGE I;  5CCL A;  5DAE A;  1PTR A;  1V1I A;  2OVO A;  3E59 A;  2N71 A;  2NU1 I;  3UOE A;  1P9G A;  4AML A;  2N52 A;  2B0U C;  1MJA A;  2JA1 A;  2GVI A;  2ORW A;  2UVO A;  4MPI A;  1KMA A;  2NU2 I;  1UVF A;  1S20 A;  1TUR A;  1XX6 A;  1W3S A;  2QQ0 A;  2ELI A;  2YUU A;  2DKV A;  1MJB A;  5E3P A;  2J87 A;  3SEK C;  2PQ8 A;  1DS2 I;  1UUC A;  2B8T A;  2N17 A;  2WGC A;  2V53 A;  3OXG A;  1CT4 I;  1X4S A;  2OU2 A;  1FYB A;  1OVO A;  2LUY A;  1V1H A;  3QTL D;  4HGU A;  1OYV I;  2ORV A;  1LR7 A;  2OD1 A;  5J8C A;  2CWG A;  1TBR R;  2JW6 A;  3R5B A;  1WTJ A;  1SGP I;  2QQC A;  1SGR I;  1YU6 C;  1XBT A;  2V1C A;  1TIH A;  1MT1 A;  2BUS A;  2YQP A;  3FSY A;  3R5C A;  3E2I A;  2P6A C;  7WGA A;  1TUS A;  2ENN A;  3B4V C;  3FSX A;  2GKR I;  2KCX A;  1P9Z A;  3SGQ I;  4UXI A;  1X74 A;  1BUS A;  1HPT A;  2L7X A;  1RFH A;  2WVJ A;  2ERW A;  5EX3 A;  1OMU A;  2LB7 A;  1PPF I;  2V1C C;  2UZ3 A;  3OL0 A;  1W4R A;  2SGP I;  2JZM A;  1UVG A;  1NUB A;  1IY5 A;  5EX0 A;  1TBQ R;  2JXD A;  4OVO A;  1BMO A;  1CHO I;  1PJU A;  3R5A A;  3SGB I;  2KMP A;  3UGD A;  2CWF A;  2DIP A;  3TO7 A;  2KMR A;  2E73 A;  2F3C I;  2OZU A;  2GKT I;  2W0T A;  2SGD I;  1HDL A;  1K7T A;  1Q9B A;  3QAH A;  4JCV E;  3UGI A;  1IW4 A;  2K9H A;  1KBE A;  2JYY A;  2E5R A;  1TBO A;  3TOB A;  1FAQ A;  2SGQ I;  1LR8 A;  3HH2 C;  2X3T A;  1H0Z A;  4UXJ A;  3TO6 A;  1CT2 I;  1KBF A;  2A20 A;  1HJA I;  2XRC A;  2SGE I;  2CWH A;  3GOX A;  1Y8F A;  2GKV A;  1N13 A;  2KMQ A;  1VDD A;  1Z2I A;  3CXL A;  5HI7 A;  2M5X A;  1WGT A;  1WKX A;  1Z7K B;  3KY9 A;  1WGC A;  3OVO A;  1SGD I;  3TJQ A;  4B6D A;  2RIJ A;  4FKD A;  2QQD A;  1CT0 I;  1SGY I;  3MEK A;  1M8B A;  3VDU A;  1HEV A;  2QPO A;  3OXF A;  1K7V A;  4GI3 C;  3UEY A;  5CCM A;  5FUV A;  1YTP A;  1K7U A;  2N1A B;  2WCY A;  2GIV A;  2NU0 I;  2SGF I;  1PCE A;  5E3Q A;  2Y0M A;  5HQ8 A;  3FC3 A;  2ENZ A;  1SGQ I;  1R79 A;  2ROW A;  2LEO A;  3TOA A;  3UFF A;  1CSO I;  3VDP A;  4DNC A;  3VE5 A;  1MJ9 A;  1DS3 I;  4L9M A;  4E1R A;  1SGN I;  4UXH A;  9WGA A;  1IY6 A;  2J9R A;  1U5K A;  2RC4 A;  5FUY A;  2NU3 I;  5JHW C;  1LR9 A;  4SGB I;  1AN1 I;  4A24 A;  2ODD A;  5J8F A;  2KMO A;  1R0R I;  1Y1B A;  2NU4 I;  1TGS I;  5FUW A; 
#chains in the Genus database with same CATH homology
 2X52 A;  1ULN A;  1WGT A;  1WKX A;  2WGC A;  1ULK A;  1WGC A;  4WP4 A;  1UHA A;  1HEV A;  1K7V A;  2CWG A;  1K7T A;  1K7U A;  1Q9B A;  1ULM A;  7WGA A;  2X3T A;  4AML A;  1P9Z A;  1P9G A;  4MPI A;  2UVO A;  9WGA A;  2LB7 A;  2DKV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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