2YQPA

Solution structure of the zf-hit domain in dead (asp-glu-ala-asp) box polypeptide 59
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
GSSGSSGFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEKEEKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation, hydrolase
molecule keywords Probable ATP-dependent RNA helicase DDX59
publication title Solution structure of the zf-HIT domain in DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
rcsb
source organism Homo sapiens
total genus 6
structure length 60
sequence length 60
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04438 zf-HIT HIT zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.220 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2yqpA00
2YQPA
chains in the Genus database with same CATH superfamily
1ULNA 2OD1A 2B0UC 1M8CA 1CHOI 1RFHA 2CWHA 1VDDA 4UXIA 1SGPI 1SGRI 2V1CA 1X4SA 2BUSA 5FUXA 3UGLA 3FSXA 1TUSA 3HH2C 2JXDA 1LR8A 1MJAA 2QQ0A 1K7TA 2SGDI 2QPOA 2V1CC 4L9MA 2ODDA 3VDPA 1WTJA 2OZUA 2CWGA 1TBRR 1UHAA 2ELIA 3UEJA 4SGBI 2ROWA 1IY6A 5JHWC 4JCVE 3E59A 1V1IA 2DB6A 2GKRI 3QAHA 2JA1A 2WVJA 1U5KA 3TOBA 2PQ8A 2SGPI 2JZMA 1IY5A 2N17A 3RU0A 1YTPA 2M5XA 1LR9A 1PCEA 1R0RI 1P9ZA 2L7XA 1Z2IA 2RIJA 3BJIA 3D00A 3OVOA 4OVOA 1NUBA 5J8CA 1CT2I 1TURA 3SGQI 5J8FA 2NU1I 1AN1I 1CT0I 1OYVI 2LEOA 5CCMA 1SGNI 1CGII 3R5BA 3PDNA 4DNCA 9WGAA 1TBNA 1K7UA 2N1AB 1W3SA 2VRWB 3E2IA 1XX6A 2DIPA 3SGBI 2B8TA 1KBEA 5FUWA 2KMPA 2ORVA 3R5DA 1OMTA 2ENZA 5CCLA 1SGYI 1UVGA 2JW6A 2E5RA 1FY7A 3QWPA 3TO9A 4FKDA 3FSYA 2CJSC 1LR7A 2ORWA 1HJAI 3OXFA 1BUSA 1OVOA 2SGFI 3OXGA 1H0ZA 2V53A 2WGCA 1KMAA 2LUYA 1N13A 1IW4A 1MJ9A 1W4RA 4MPIA 4E1PA 1DS3I 2ENNA 2ERWA 3KY9A 3QTLD 1HPTA 1R79A 2KMOA 2NU2I 2XRCA 1S20A 1Q9BA 2NU3I 3TO7A 2NU4I 5FUYA 1SGEI 3B4VC 1CE3A 1PTQA 2P6AC 2GKTI 2WCYA 2N52A 3OXLA 7WGAA 3R5CA 1KBFA 3SEKC 1Y8FA 1Y1CA 1HDLA 5HI7A 1OMUA 2SGQI 5E3PA 3GOXA 1Z7KB 1SGDI 1ULKA 2W0TA 2L8EA 1UUCA 2GVIA 1FARA 1MJBA 2F3CI 2J87A 1DS2I 2GIVA 3VE5A 2SGEI 5E3QA 3TJQA 1FYBA 1TBQR 1CT4I 1K7VA 2NU0I 5DAEA 2A20A 2ARPF 4A24A 3FC3A 2UVOA 1PJUA 2GKVA 2OVOA 5FUVA 1WGTA 2J9RA 2JYYA 2QQEA 2X3TA 1FAQA 2KCXA 2KMQA 1WGCA 5HQ8A 3R5AA 1TIHA 4GI3C 3OL0A 2K9HA 2N71A 5EX3A 1TBOA 3UGDA 4E1RA 2YUUA 1NXUA 3TOAA 4HGUA 1TGSI 4UXHA 1TOTA 2QQCA 1PTRA 2CWFA 2FNFX 5E3RA 4WP4A 3TO6A 2Y0MA 3UGIA 1ULMA 3CXLA 1CGJI 1BMOA 1UVFA 2UZ3A 2OU2A 1M8BA 3UOEA 1CSOI 1Y1BA 5EX0A 1XA6A 3VDUA 2RC4A 1HEVA 2KMRA 1V1HA 2YQPA 2E73A 4UXJA 1YU6C 3UEYA 1PPFI 1SGQI 1MT1A 3MEKA 1P9GA 1X74A 1WKXA 1XBTA 2LB7A 2DKVA 2QQDA 4AMLA 4B6DA 3UFFA 2X52A
chains in the Genus database with same CATH topology
2OD1A 2B0UC 1M8CA 1CHOI 1RFHA 4UXIA 1VDDA 1SGPI 1SGRI 2V1CA 1X4SA 2BUSA 5FUXA 3UGLA 1TUSA 3HH2C 2JXDA 1LR8A 2QQ0A 2SGDI 2V1CC 4L9MA 2QPOA 2ODDA 3VDPA 1TBRR 1IY6A 2ELIA 3UEJA 4SGBI 2ROWA 5JHWC 4JCVE 3E59A 1V1IA 2DB6A 2GKRI 2JA1A 2WVJA 1U5KA 2SGPI 2JZMA 1IY5A 2N17A 3RU0A 1YTPA 2M5XA 1LR9A 1PCEA 1R0RI 2L7XA 3BJIA 4OVOA 3D00A 3OVOA 1NUBA 1CT2I 1TURA 3SGQI 2NU1I 1AN1I 1CT0I 1OYVI 2LEOA 5CCMA 1SGNI 1CGII 3PDNA 1TBNA 2N1AB 1W3SA 2VRWB 3E2IA 1XX6A 2DIPA 3SGBI 2B8TA 1KBEA 5FUWA 2KMPA 2ORVA 1OMTA 2ENZA 5CCLA 1SGYI 1UVGA 2JW6A 2E5RA 3QWPA 4FKDA 2CJSC 1LR7A 2ORWA 1HJAI 3OXFA 1BUSA 1OVOA 2SGFI 3OXGA 1H0ZA 2V53A 1KMAA 2LUYA 1N13A 1IW4A 1W4RA 4E1PA 1DS3I 2ENNA 2ERWA 3KY9A 3QTLD 1HPTA 1R79A 2KMOA 2NU2I 2XRCA 2NU3I 2NU4I 5FUYA 1SGEI 3B4VC 1CE3A 1PTQA 2P6AC 2GKTI 2WCYA 2N52A 3OXLA 1KBFA 3SEKC 1Y8FA 1Y1CA 5HI7A 1OMUA 2SGQI 3GOXA 1Z7KB 1SGDI 2W0TA 2L8EA 1UUCA 2GVIA 1FARA 2F3CI 2J87A 1DS2I 3VE5A 2SGEI 3TJQA 1FYBA 1HDLA 1TBQR 1CT4I 2NU0I 5DAEA 4A24A 2ARPF 2A20A 3FC3A 1PJUA 2GKVA 2OVOA 5FUVA 2J9RA 2JYYA 2QQEA 1FAQA 2KCXA 2KMQA 5HQ8A 1TIHA 4GI3C 3OL0A 2K9HA 2N71A 5EX3A 1TBOA 3UGDA 4E1RA 2YUUA 4HGUA 1TGSI 4UXHA 1TOTA 2QQCA 1PTRA 2FNFX 3UGIA 3CXLA 1CGJI 1BMOA 1UVFA 2UZ3A 1M8BA 1CSOI 1Y1BA 5EX0A 1XA6A 3VDUA 2KMRA 1V1HA 2YQPA 2E73A 4UXJA 1YU6C 3UEYA 1PPFI 1SGQI 1MT1A 3MEKA 1X74A 1XBTA 2QQDA 4B6DA 3UFFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YQP A; 
#chains in the Genus database with same CATH topology
 1ULN A;  2OD1 A;  2B0U C;  1M8C A;  1CHO I;  1RFH A;  2CWH A;  1VDD A;  4UXI A;  1SGP I;  1SGR I;  2V1C A;  1X4S A;  2BUS A;  5FUX A;  3UGL A;  3FSX A;  1TUS A;  3HH2 C;  2JXD A;  1LR8 A;  1MJA A;  2QQ0 A;  1K7T A;  2SGD I;  2QPO A;  2V1C C;  4L9M A;  2ODD A;  3VDP A;  1WTJ A;  2OZU A;  2CWG A;  1TBR R;  1UHA A;  2ELI A;  3UEJ A;  4SGB I;  2ROW A;  1IY6 A;  5JHW C;  4JCV E;  3E59 A;  1V1I A;  2DB6 A;  2GKR I;  3QAH A;  2JA1 A;  2WVJ A;  1U5K A;  3TOB A;  2PQ8 A;  2SGP I;  2JZM A;  1IY5 A;  2N17 A;  3RU0 A;  1YTP A;  2M5X A;  1LR9 A;  1PCE A;  1R0R I;  1P9Z A;  2L7X A;  1Z2I A;  2RIJ A;  3BJI A;  3D00 A;  3OVO A;  4OVO A;  1NUB A;  5J8C A;  1CT2 I;  1TUR A;  3SGQ I;  5J8F A;  2NU1 I;  1AN1 I;  1CT0 I;  1OYV I;  2LEO A;  5CCM A;  1SGN I;  1CGI I;  3R5B A;  3PDN A;  4DNC A;  9WGA A;  1TBN A;  1K7U A;  2N1A B;  1W3S A;  2VRW B;  3E2I A;  1XX6 A;  2DIP A;  3SGB I;  2B8T A;  1KBE A;  5FUW A;  2KMP A;  2ORV A;  3R5D A;  1OMT A;  2ENZ A;  5CCL A;  1SGY I;  1UVG A;  2JW6 A;  2E5R A;  1FY7 A;  3QWP A;  3TO9 A;  4FKD A;  3FSY A;  2CJS C;  1LR7 A;  2ORW A;  1HJA I;  3OXF A;  1BUS A;  1OVO A;  2SGF I;  3OXG A;  1H0Z A;  2V53 A;  2WGC A;  1KMA A;  2LUY A;  1N13 A;  1IW4 A;  1MJ9 A;  1W4R A;  4MPI A;  4E1P A;  1DS3 I;  2ENN A;  2ERW A;  3KY9 A;  3QTL D;  1HPT A;  1R79 A;  2KMO A;  2NU2 I;  2XRC A;  1S20 A;  1Q9B A;  2NU3 I;  3TO7 A;  2NU4 I;  5FUY A;  1SGE I;  3B4V C;  1CE3 A;  1PTQ A;  2P6A C;  2GKT I;  2WCY A;  2N52 A;  3OXL A;  7WGA A;  3R5C A;  1KBF A;  3SEK C;  1Y8F A;  1Y1C A;  1HDL A;  5HI7 A;  1OMU A;  2SGQ I;  5E3P A;  3GOX A;  1Z7K B;  1SGD I;  1ULK A;  2W0T A;  2L8E A;  1UUC A;  2GVI A;  1FAR A;  1MJB A;  2F3C I;  2J87 A;  1DS2 I;  2GIV A;  3VE5 A;  2SGE I;  5E3Q A;  3TJQ A;  1FYB A;  1TBQ R;  1CT4 I;  1K7V A;  2NU0 I;  5DAE A;  2A20 A;  2ARP F;  4A24 A;  3FC3 A;  2UVO A;  1PJU A;  2GKV A;  2OVO A;  5FUV A;  1WGT A;  2J9R A;  2JYY A;  2QQE A;  2X3T A;  1FAQ A;  2KCX A;  2KMQ A;  1WGC A;  5HQ8 A;  3R5A A;  1TIH A;  4GI3 C;  3OL0 A;  2K9H A;  2N71 A;  5EX3 A;  1TBO A;  3UGD A;  4E1R A;  2YUU A;  1NXU A;  3TOA A;  4HGU A;  1TGS I;  4UXH A;  1TOT A;  2QQC A;  1PTR A;  2CWF A;  2FNF X;  5E3R A;  4WP4 A;  3TO6 A;  2Y0M A;  3UGI A;  1ULM A;  3CXL A;  1CGJ I;  1BMO A;  1UVF A;  2UZ3 A;  2OU2 A;  1M8B A;  3UOE A;  1CSO I;  1Y1B A;  5EX0 A;  1XA6 A;  3VDU A;  2RC4 A;  1HEV A;  2KMR A;  1V1H A;  2YQP A;  2E73 A;  4UXJ A;  1YU6 C;  3UEY A;  1PPF I;  1SGQ I;  1MT1 A;  3MEK A;  1P9G A;  1X74 A;  1WKX A;  1XBT A;  2LB7 A;  2DKV A;  2QQD A;  4AML A;  4B6D A;  3UFF A;  2X52 A; 
#chains in the Genus database with same CATH homology
 2OD1 A;  2B0U C;  1M8C A;  1CHO I;  1RFH A;  4UXI A;  1VDD A;  1SGP I;  1SGR I;  2V1C A;  1X4S A;  2BUS A;  5FUX A;  3UGL A;  1TUS A;  3HH2 C;  2JXD A;  1LR8 A;  2QQ0 A;  2SGD I;  2V1C C;  4L9M A;  2QPO A;  2ODD A;  3VDP A;  1TBR R;  1IY6 A;  2ELI A;  3UEJ A;  4SGB I;  2ROW A;  5JHW C;  4JCV E;  3E59 A;  1V1I A;  2DB6 A;  2GKR I;  2JA1 A;  2WVJ A;  1U5K A;  2SGP I;  2JZM A;  1IY5 A;  2N17 A;  3RU0 A;  1YTP A;  2M5X A;  1LR9 A;  1PCE A;  1R0R I;  2L7X A;  3BJI A;  4OVO A;  3D00 A;  3OVO A;  1NUB A;  1CT2 I;  1TUR A;  3SGQ I;  2NU1 I;  1AN1 I;  1CT0 I;  1OYV I;  2LEO A;  5CCM A;  1SGN I;  1CGI I;  3PDN A;  1TBN A;  2N1A B;  1W3S A;  2VRW B;  3E2I A;  1XX6 A;  2DIP A;  3SGB I;  2B8T A;  1KBE A;  5FUW A;  2KMP A;  2ORV A;  1OMT A;  2ENZ A;  5CCL A;  1SGY I;  1UVG A;  2JW6 A;  2E5R A;  3QWP A;  4FKD A;  2CJS C;  1LR7 A;  2ORW A;  1HJA I;  3OXF A;  1BUS A;  1OVO A;  2SGF I;  3OXG A;  1H0Z A;  2V53 A;  1KMA A;  2LUY A;  1N13 A;  1IW4 A;  1W4R A;  4E1P A;  1DS3 I;  2ENN A;  2ERW A;  3KY9 A;  3QTL D;  1HPT A;  1R79 A;  2KMO A;  2NU2 I;  2XRC A;  2NU3 I;  2NU4 I;  5FUY A;  1SGE I;  3B4V C;  1CE3 A;  1PTQ A;  2P6A C;  2GKT I;  2WCY A;  2N52 A;  3OXL A;  1KBF A;  3SEK C;  1Y8F A;  1Y1C A;  5HI7 A;  1OMU A;  2SGQ I;  3GOX A;  1Z7K B;  1SGD I;  2W0T A;  2L8E A;  1UUC A;  2GVI A;  1FAR A;  2F3C I;  2J87 A;  1DS2 I;  3VE5 A;  2SGE I;  3TJQ A;  1FYB A;  1HDL A;  1TBQ R;  1CT4 I;  2NU0 I;  5DAE A;  4A24 A;  2ARP F;  2A20 A;  3FC3 A;  1PJU A;  2GKV A;  2OVO A;  5FUV A;  2J9R A;  2JYY A;  2QQE A;  1FAQ A;  2KCX A;  2KMQ A;  5HQ8 A;  1TIH A;  4GI3 C;  3OL0 A;  2K9H A;  2N71 A;  5EX3 A;  1TBO A;  3UGD A;  4E1R A;  2YUU A;  4HGU A;  1TGS I;  4UXH A;  1TOT A;  2QQC A;  1PTR A;  2FNF X;  3UGI A;  3CXL A;  1CGJ I;  1BMO A;  1UVF A;  2UZ3 A;  1M8B A;  1CSO I;  1Y1B A;  5EX0 A;  1XA6 A;  3VDU A;  2KMR A;  1V1H A;  2YQP A;  2E73 A;  4UXJ A;  1YU6 C;  3UEY A;  1PPF I;  1SGQ I;  1MT1 A;  3MEK A;  1X74 A;  1XBT A;  2QQD A;  4B6D A;  3UFF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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