2YQPA

Solution structure of the zf-hit domain in dead (asp-glu-ala-asp) box polypeptide 59
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
GSSGSSGFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEKEEKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation, hydrolase
molecule keywords Probable ATP-dependent RNA helicase DDX59
publication title Solution structure of the zf-HIT domain in DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
rcsb
source organism Homo sapiens
total genus 6
structure length 60
sequence length 60
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04438 zf-HIT HIT zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.220 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2yqpA00
2YQPA
chains in the Genus database with same CATH superfamily
7WGAA 5FUWA 2YUUA 1U5KA 2J87A 3UFFA 1H0ZA 2GKVA 2A20A 5J8CA 3PDNA 2CWGA 1XBTA 1DS3I 2FNFX 1SGYI 2GIVA 1LR8A 2GKTI 2KMPA 2WGCA 1SGNI 2DIPA 2JYYA 2OZUA 3SGBI 2B8TA 1WGTA 1KMAA 3R5BA 5FUVA 1M8CA 2QQEA 1X74A 1Y1BA 1W3SA 1WTJA 2GVIA 2W0TA 1UUCA 2JXDA 4E1PA 3MEKA 2LB7A 3RU0A 3KY9A 2GKRI 1NUBA 1OVOA 2OU2A 1V1IA 3FSXA 1DS2I 3OVOA 3OXFA 3VDUA 5HQ8A 2N71A 1YTPA 1BMOA 2KCXA 3R5AA 1ULKA 1PCEA 4WP4A 4E1RA 1RFHA 3R5DA 3TO6A 2ODDA 1K7VA 2PQ8A 2E73A 1CGII 2RC4A 2V1CA 2M5XA 2B0UC 1HPTA 2L7XA 3QAHA 2P6AC 2XRCA 5CCMA 1FAQA 2ENNA 1SGDI 2NU3I 3E59A 1YU6C 1V1HA 2Y0MA 1SGRI 2CWFA 1HEVA 1UVFA 3UEYA 1MT1A 4L9MA 1KBEA 3BJIA 2L8EA 1NXUA 2QPOA 2ROWA 1FARA 1TUSA 1UHAA 3UGDA 1TGSI 2VRWB 2QQCA 1PTRA 4JCVE 1FY7A 1ULMA 3OL0A 1TOTA 4DNCA 1W4RA 1P9GA 1UVGA 2F3CI 1N13A 1WGCA 2RIJA 2SGDI 2LEOA 1KBFA 1LR7A 3SEKC 1TBOA 1XX6A 1WKXA 1Z2IA 3HH2C 3SGQI 1K7TA 1TBRR 4UXHA 1Y8FA 2LUYA 5E3RA 3GOXA 2CJSC 2N52A 1CE3A 3OXGA 1PPFI 2V53A 2ENZA 2UZ3A 5HI7A 4AMLA 4B6DA 1X4SA 5EX0A 1TBNA 3OXLA 3UOEA 2BUSA 2QQDA 1Y1CA 2X52A 2ARPF 1SGEI 1TBQR 1OMTA 3TOBA 2ERWA 5E3PA 3QWPA 5E3QA 1FYBA 1CGJI 4UXIA 3TOAA 3UGIA 5J8FA 2DKVA 1CT2I 2ELIA 1CSOI 2CWHA 2NU1I 2OD1A 1S20A 2K9HA 1SGPI 1TIHA 1PTQA 2JZMA 4MPIA 4UXJA 2NU2I 1MJBA 1OYVI 3QTLD 4OVOA 1R79A 1IY6A 3FC3A 1K7UA 1CHOI 1R0RI 2UVOA 2YQPA 2KMRA 2JA1A 3VE5A 4FKDA 1IY5A 3R5CA 1HDLA 5CCLA 2QQ0A 2DB6A 1OMUA 5FUXA 5FUYA 3UGLA 1ULNA 2WVJA 5JHWC 1VDDA 1TURA 2SGEI 1LR9A 2E5RA 3B4VC 2SGPI 5EX3A 1P9ZA 4A24A 1BUSA 3VDPA 1MJ9A 1AN1I 2N1AB 3UEJA 1PJUA 2J9RA 1CT0I 1M8BA 2ORVA 2ORWA 2N17A 1CT4I 2SGQI 2NU0I 2X3TA 2V1CC 1XA6A 2WCYA 3TO9A 3CXLA 1Q9BA 2KMQA 1HJAI 1Z7KB 1IW4A 1MJAA 3TJQA 4GI3C 9WGAA 3TO7A 4SGBI 1SGQI 4HGUA 2JW6A 2KMOA 2OVOA 3E2IA 3FSYA 2NU4I 3D00A 5DAEA 2SGFI
chains in the Genus database with same CATH topology
5FUWA 2YUUA 1U5KA 2J87A 3UFFA 1H0ZA 2GKVA 2A20A 3PDNA 1XBTA 1DS3I 2FNFX 1SGYI 1LR8A 2GKTI 2KMPA 1SGNI 2DIPA 2JYYA 3SGBI 2B8TA 1KMAA 5FUVA 1M8CA 2QQEA 1X74A 1Y1BA 1W3SA 2GVIA 2W0TA 1UUCA 2JXDA 4E1PA 3MEKA 3RU0A 3KY9A 2GKRI 1NUBA 1OVOA 1V1IA 3OVOA 1DS2I 5HQ8A 3OXFA 3VDUA 2N71A 1YTPA 1BMOA 2KCXA 4E1RA 1PCEA 1RFHA 2ODDA 2E73A 1CGII 2V1CA 2M5XA 2B0UC 1HPTA 2L7XA 1FAQA 2P6AC 2XRCA 5CCMA 2ENNA 1SGDI 2NU3I 3E59A 1YU6C 1V1HA 1SGRI 1UVFA 3UEYA 1MT1A 4L9MA 1KBEA 3BJIA 2L8EA 2QPOA 2ROWA 1FARA 1TUSA 3UGDA 1TGSI 2VRWB 2QQCA 1PTRA 4JCVE 3OL0A 1TOTA 1W4RA 1UVGA 2F3CI 2SGDI 1N13A 2LEOA 1KBFA 1LR7A 3SEKC 1TBOA 1XX6A 3HH2C 3SGQI 4UXHA 1TBRR 1CE3A 1Y8FA 2LUYA 3GOXA 2CJSC 2N52A 3OXGA 1PPFI 2V53A 2ENZA 2UZ3A 5HI7A 4B6DA 1X4SA 5EX0A 1TBNA 3OXLA 2BUSA 2QQDA 1Y1CA 2ARPF 1SGEI 1TBQR 1OMTA 2ERWA 3QWPA 1FYBA 1CGJI 4UXIA 3UGIA 2OD1A 1CT2I 2ELIA 1CSOI 2NU1I 2K9HA 4UXJA 1SGPI 1TIHA 1PTQA 2JZMA 2NU2I 1OYVI 3QTLD 4OVOA 1R79A 1IY6A 3FC3A 1CHOI 1R0RI 2YQPA 2KMRA 2JA1A 3VE5A 4FKDA 1IY5A 1HDLA 5CCLA 2QQ0A 2DB6A 1OMUA 5FUXA 5FUYA 3UGLA 2WVJA 5JHWC 1VDDA 1TURA 2SGEI 1LR9A 2E5RA 3B4VC 2SGPI 5EX3A 4A24A 1BUSA 3VDPA 3UEJA 1AN1I 2N1AB 1PJUA 2J9RA 1CT0I 1M8BA 2ORVA 2ORWA 2N17A 1CT4I 2SGQI 2NU0I 2V1CC 1XA6A 2WCYA 3CXLA 2KMQA 1HJAI 1Z7KB 1IW4A 3TJQA 4GI3C 4SGBI 1SGQI 4HGUA 2JW6A 2KMOA 2OVOA 3E2IA 2NU4I 3D00A 5DAEA 2SGFI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YQP A; 
#chains in the Genus database with same CATH topology
 7WGA A;  5FUW A;  2YUU A;  1U5K A;  2J87 A;  3UFF A;  1H0Z A;  2GKV A;  2A20 A;  5J8C A;  3PDN A;  2CWG A;  1XBT A;  1DS3 I;  2FNF X;  1SGY I;  2GIV A;  1LR8 A;  2GKT I;  2KMP A;  2WGC A;  1SGN I;  2DIP A;  2JYY A;  2OZU A;  3SGB I;  2B8T A;  1WGT A;  1KMA A;  3R5B A;  5FUV A;  1M8C A;  2QQE A;  1X74 A;  1Y1B A;  1W3S A;  1WTJ A;  2GVI A;  2W0T A;  1UUC A;  2JXD A;  4E1P A;  3MEK A;  2LB7 A;  3RU0 A;  3KY9 A;  2GKR I;  1NUB A;  1OVO A;  2OU2 A;  1V1I A;  3FSX A;  1DS2 I;  3OVO A;  3OXF A;  3VDU A;  5HQ8 A;  2N71 A;  1YTP A;  1BMO A;  2KCX A;  3R5A A;  1ULK A;  1PCE A;  4WP4 A;  4E1R A;  1RFH A;  3R5D A;  3TO6 A;  2ODD A;  1K7V A;  2PQ8 A;  2E73 A;  1CGI I;  2RC4 A;  2V1C A;  2M5X A;  2B0U C;  1HPT A;  2L7X A;  3QAH A;  2P6A C;  2XRC A;  5CCM A;  1FAQ A;  2ENN A;  1SGD I;  2NU3 I;  3E59 A;  1YU6 C;  1V1H A;  2Y0M A;  1SGR I;  2CWF A;  1HEV A;  1UVF A;  3UEY A;  1MT1 A;  4L9M A;  1KBE A;  3BJI A;  2L8E A;  1NXU A;  2QPO A;  2ROW A;  1FAR A;  1TUS A;  1UHA A;  3UGD A;  1TGS I;  2VRW B;  2QQC A;  1PTR A;  4JCV E;  1FY7 A;  1ULM A;  3OL0 A;  1TOT A;  4DNC A;  1W4R A;  1P9G A;  1UVG A;  2F3C I;  1N13 A;  1WGC A;  2RIJ A;  2SGD I;  2LEO A;  1KBF A;  1LR7 A;  3SEK C;  1TBO A;  1XX6 A;  1WKX A;  1Z2I A;  3HH2 C;  3SGQ I;  1K7T A;  1TBR R;  4UXH A;  1Y8F A;  2LUY A;  5E3R A;  3GOX A;  2CJS C;  2N52 A;  1CE3 A;  3OXG A;  1PPF I;  2V53 A;  2ENZ A;  2UZ3 A;  5HI7 A;  4AML A;  4B6D A;  1X4S A;  5EX0 A;  1TBN A;  3OXL A;  3UOE A;  2BUS A;  2QQD A;  1Y1C A;  2X52 A;  2ARP F;  1SGE I;  1TBQ R;  1OMT A;  3TOB A;  2ERW A;  5E3P A;  3QWP A;  5E3Q A;  1FYB A;  1CGJ I;  4UXI A;  3TOA A;  3UGI A;  5J8F A;  2DKV A;  1CT2 I;  2ELI A;  1CSO I;  2CWH A;  2NU1 I;  2OD1 A;  1S20 A;  2K9H A;  1SGP I;  1TIH A;  1PTQ A;  2JZM A;  4MPI A;  4UXJ A;  2NU2 I;  1MJB A;  1OYV I;  3QTL D;  4OVO A;  1R79 A;  1IY6 A;  3FC3 A;  1K7U A;  1CHO I;  1R0R I;  2UVO A;  2YQP A;  2KMR A;  2JA1 A;  3VE5 A;  4FKD A;  1IY5 A;  3R5C A;  1HDL A;  5CCL A;  2QQ0 A;  2DB6 A;  1OMU A;  5FUX A;  5FUY A;  3UGL A;  1ULN A;  2WVJ A;  5JHW C;  1VDD A;  1TUR A;  2SGE I;  1LR9 A;  2E5R A;  3B4V C;  2SGP I;  5EX3 A;  1P9Z A;  4A24 A;  1BUS A;  3VDP A;  1MJ9 A;  1AN1 I;  2N1A B;  3UEJ A;  1PJU A;  2J9R A;  1CT0 I;  1M8B A;  2ORV A;  2ORW A;  2N17 A;  1CT4 I;  2SGQ I;  2NU0 I;  2X3T A;  2V1C C;  1XA6 A;  2WCY A;  3TO9 A;  3CXL A;  1Q9B A;  2KMQ A;  1HJA I;  1Z7K B;  1IW4 A;  1MJA A;  3TJQ A;  4GI3 C;  9WGA A;  3TO7 A;  4SGB I;  1SGQ I;  4HGU A;  2JW6 A;  2KMO A;  2OVO A;  3E2I A;  3FSY A;  2NU4 I;  3D00 A;  5DAE A;  2SGF I; 
#chains in the Genus database with same CATH homology
 5FUW A;  2YUU A;  1U5K A;  2J87 A;  3UFF A;  1H0Z A;  2GKV A;  2A20 A;  3PDN A;  1XBT A;  1DS3 I;  2FNF X;  1SGY I;  1LR8 A;  2GKT I;  2KMP A;  1SGN I;  2DIP A;  2JYY A;  3SGB I;  2B8T A;  1KMA A;  5FUV A;  1M8C A;  2QQE A;  1X74 A;  1Y1B A;  1W3S A;  2GVI A;  2W0T A;  1UUC A;  2JXD A;  4E1P A;  3MEK A;  3RU0 A;  3KY9 A;  2GKR I;  1NUB A;  1OVO A;  1V1I A;  3OVO A;  1DS2 I;  5HQ8 A;  3OXF A;  3VDU A;  2N71 A;  1YTP A;  1BMO A;  2KCX A;  4E1R A;  1PCE A;  1RFH A;  2ODD A;  2E73 A;  1CGI I;  2V1C A;  2M5X A;  2B0U C;  1HPT A;  2L7X A;  1FAQ A;  2P6A C;  2XRC A;  5CCM A;  2ENN A;  1SGD I;  2NU3 I;  3E59 A;  1YU6 C;  1V1H A;  1SGR I;  1UVF A;  3UEY A;  1MT1 A;  4L9M A;  1KBE A;  3BJI A;  2L8E A;  2QPO A;  2ROW A;  1FAR A;  1TUS A;  3UGD A;  1TGS I;  2VRW B;  2QQC A;  1PTR A;  4JCV E;  3OL0 A;  1TOT A;  1W4R A;  1UVG A;  2F3C I;  2SGD I;  1N13 A;  2LEO A;  1KBF A;  1LR7 A;  3SEK C;  1TBO A;  1XX6 A;  3HH2 C;  3SGQ I;  4UXH A;  1TBR R;  1CE3 A;  1Y8F A;  2LUY A;  3GOX A;  2CJS C;  2N52 A;  3OXG A;  1PPF I;  2V53 A;  2ENZ A;  2UZ3 A;  5HI7 A;  4B6D A;  1X4S A;  5EX0 A;  1TBN A;  3OXL A;  2BUS A;  2QQD A;  1Y1C A;  2ARP F;  1SGE I;  1TBQ R;  1OMT A;  2ERW A;  3QWP A;  1FYB A;  1CGJ I;  4UXI A;  3UGI A;  2OD1 A;  1CT2 I;  2ELI A;  1CSO I;  2NU1 I;  2K9H A;  4UXJ A;  1SGP I;  1TIH A;  1PTQ A;  2JZM A;  2NU2 I;  1OYV I;  3QTL D;  4OVO A;  1R79 A;  1IY6 A;  3FC3 A;  1CHO I;  1R0R I;  2YQP A;  2KMR A;  2JA1 A;  3VE5 A;  4FKD A;  1IY5 A;  1HDL A;  5CCL A;  2QQ0 A;  2DB6 A;  1OMU A;  5FUX A;  5FUY A;  3UGL A;  2WVJ A;  5JHW C;  1VDD A;  1TUR A;  2SGE I;  1LR9 A;  2E5R A;  3B4V C;  2SGP I;  5EX3 A;  4A24 A;  1BUS A;  3VDP A;  3UEJ A;  1AN1 I;  2N1A B;  1PJU A;  2J9R A;  1CT0 I;  1M8B A;  2ORV A;  2ORW A;  2N17 A;  1CT4 I;  2SGQ I;  2NU0 I;  2V1C C;  1XA6 A;  2WCY A;  3CXL A;  2KMQ A;  1HJA I;  1Z7K B;  1IW4 A;  3TJQ A;  4GI3 C;  4SGB I;  1SGQ I;  4HGU A;  2JW6 A;  2KMO A;  2OVO A;  3E2I A;  2NU4 I;  3D00 A;  5DAE A;  2SGF I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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