2M5XA

Novel method of protein purification for structural research. example of ultra high resolution structure of spi-2 inhibitor by x-ray and nmr spectroscopy.
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
40
structure length
40
Chain Sequence
EAAVCTTEWDPVCGKDGKTYSNLCWLNEAGVGLDHEGECL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
source organism Galleria mellonella
publication title Atomic resolution structure of a protein prepared by non-enzymatic His-tag removal. Crystallographic and NMR study of GmSPI-2 inhibitor.
pubmed doi rcsb
molecule keywords Silk protease inhibitor 2
total genus 7
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2013-03-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2m5xA00
1LR9A 1HJAI 1BUSA 1SGQI 1CT2I 1TIHA 1NUBA 3SGBI 4SGBI 5JHWC 2SGQI 1SGYI 1AN1I 3HH2C 3SGQI 1HPTA 1PCEA 1N13A 3TJQA 1TBRR 1FYBA 1UVGA 1YU6C 1SGRI 1M8CA 2OVOA 1HDLA 1SGEI 1SGPI 1OMUA 2BUSA 1OMTA 1DS3I 1SGNI 2NU0I 1IY5A 2V53A 4HGUA 2QQDA 2N17A 2NU2I 2M5XA 1IW4A 1PPFI 1IY6A 2KMRA 1Y1CA 2SGPI 1CGJI 4OVOA 2ARPF 2JYYA 1H0ZA 1CT4I 1SGDI 3OVOA 2WCYA 1TUSA 2GKTI 1CHOI 1TURA 2JZMA 2SGEI 2NU3I 2B0UC 4GI3C 5DAEA 1M8BA 2XRCA 1UVFA 2JXDA 2N52A 1OYVI 2KCXA 2LEOA 2KMOA 2SGDI 2ERWA 1LR8A 3B4VC 1PJUA 3QTLD 1OVOA 1CGII 2SGFI 2P6AC 1CT0I 1KMAA 1LR7A 2F3CI 1BMOA 1YTPA 1MT1A 1CSOI 1Z7KB 1CE3A 1TGSI 2NU1I 2GKVA 1TBQR 1UUCA 2KMPA 2GKRI 1R0RI 2N71A 3SEKC 2KMQA 2QQCA 2NU4I 1Y1BA 1DS2I
chains in the Genus database with same CATH superfamily
1LR9A 1HJAI 1BUSA 1Y8FA 3TOAA 1SGQI 4AMLA 5CCLA 3UGIA 3R5DA 2X3TA 1CT2I 1TIHA 1MJ9A 1NUBA 3SGBI 3UFFA 4SGBI 5JHWC 2SGQI 1WKXA 1XA6A 1PTRA 1SGYI 2OD1A 1AN1I 2OU2A 1P9ZA 2RC4A 3HH2C 1PTQA 1TOTA 3QAHA 3SGQI 1HPTA 3FSYA 1MJBA 2V1CA 1PCEA 1N13A 3TJQA 1TBRR 3R5BA 1FYBA 1UVGA 2DB6A 2Y0MA 5FUVA 3BJIA 5E3QA 1YU6C 3CXLA 1FAQA 3KY9A 3D00A 1WTJA 1SGRI 1M8CA 2OVOA 3E2IA 2E5RA 3UEYA 1HDLA 2LUYA 2CWHA 1SGEI 1SGPI 1OMUA 1FY7A 5HQ8A 2BUSA 2WVJA 1ULMA 3E59A 1KBEA 1OMTA 3TO7A 1DS3I 3UGDA 4B6DA 9WGAA 1SGNI 2NU0I 3OXGA 1NXUA 1IY5A 1UHAA 2ORVA 2V53A 5EX0A 1W3SA 1RFHA 3OXFA 4HGUA 2N1AB 2FNFX 1XBTA 2K9HA 2QQDA 1X4SA 4UXIA 2N17A 2NU2I 2QQ0A 2M5XA 2E73A 4DNCA 3FSXA 1IW4A 1PPFI 4UXJA 1IY6A 2KMRA 2YQPA 4E1RA 3PDNA 1FARA 1Y1CA 1R79A 2SGPI 1ULNA 1CGJI 3QWPA 4OVOA 2ARPF 2JYYA 2DKVA 2JA1A 1H0ZA 1CT4I 2QPOA 4JCVE 1W4RA 2GIVA 2L7XA 2ORWA 3OVOA 2GVIA 2LB7A 4WP4A 2WCYA 2DIPA 1TUSA 2GKTI 1CHOI 5EX3A 1TURA 1U5KA 2J87A 5E3PA 1TBOA 2JZMA 2ROWA 2SGEI 2YUUA 1K7UA 2NU3I 2B0UC 2J9RA 2UVOA 4GI3C 1WGCA 2UZ3A 4MPIA 5DAEA 2L8EA 2PQ8A 1M8BA 2JW6A 1MJAA 4FKDA 1WGTA 1S20A 3VDUA 3OXLA 2XRCA 2WGCA 5J8CA 2ENZA 1HEVA 2A20A 1UVFA 2JXDA 1X74A 2CJSC 2X52A 2N52A 3R5CA 5FUXA 3TO9A 2W0TA 1OYVI 2KCXA 5FUWA 2LEOA 3RU0A 1Z2IA 1VDDA 2KMOA 2SGDI 5FUYA 7WGAA 2ERWA 1KBFA 1LR8A 3B4VC 2ODDA 1PJUA 3MEKA 3QTLD 1OVOA 1CGII 2QQEA 2SGFI 3OL0A 2RIJA 2P6AC 1CT0I 1ULKA 1KMAA 1Q9BA 3UGLA 1LR7A 5J8FA 1TBNA 2F3CI 1BMOA 1YTPA 3R5AA 4L9MA 5HI7A 2B8TA 4E1PA 1MT1A 3UOEA 1K7VA 1CSOI 1V1HA 2CWFA 1Z7KB 1CE3A 1TGSI 2CWGA 2NU1I 3VDPA 3FC3A 2GKVA 1TBQR 2V1CC 1UUCA 2ELIA 3TO6A 2OZUA 4A24A 2KMPA 1Y1BA 2GKRI 3UEJA 2ENNA 1R0RI 2N71A 5CCMA 3SEKC 3TOBA 5E3RA 2VRWB 1P9GA 3GOXA 2KMQA 2QQCA 2NU4I 1V1IA 4UXHA 1SGDI 1K7TA 1XX6A 3VE5A 1DS2I
chains in the Genus database with same CATH topology
1LR9A 1HJAI 1BUSA 1Y8FA 1SGQI 5CCLA 3UGIA 1CT2I 1TIHA 1NUBA 3SGBI 3UFFA 4SGBI 5JHWC 2SGQI 1XA6A 1PTRA 1SGYI 2OD1A 1AN1I 3HH2C 3SGQI 1PTQA 1TOTA 1HPTA 2V1CA 1PCEA 1N13A 3TJQA 1TBRR 1FYBA 1UVGA 2DB6A 5FUVA 3BJIA 1YU6C 3CXLA 3KY9A 3D00A 3E2IA 1SGRI 1M8CA 2OVOA 3UEYA 2E5RA 1HDLA 2LUYA 1SGEI 1SGPI 1OMUA 5HQ8A 1FAQA 2BUSA 2WVJA 3E59A 1KBEA 1OMTA 3UGDA 1DS3I 4B6DA 1SGNI 2NU0I 3OXGA 1IY5A 2ORVA 2V53A 5EX0A 1W3SA 1RFHA 3OXFA 4HGUA 2N1AB 2FNFX 1XBTA 2K9HA 2QQDA 1X4SA 4UXIA 2N17A 2NU2I 2QQ0A 2M5XA 2E73A 1IW4A 1PPFI 4UXJA 1IY6A 2KMRA 2YQPA 4E1RA 3PDNA 1FARA 1Y1CA 1R79A 2SGPI 1CGJI 3QWPA 4OVOA 2ARPF 2JYYA 2JA1A 1H0ZA 1CT4I 2QPOA 4JCVE 1W4RA 1SGDI 2L7XA 2ORWA 3OVOA 2GVIA 5EX3A 2WCYA 2DIPA 1TUSA 2GKTI 1CHOI 1TURA 1U5KA 2J87A 1TBOA 2JZMA 2ROWA 2SGEI 2YUUA 2NU3I 2B0UC 2J9RA 4GI3C 2UZ3A 5DAEA 2L8EA 1M8BA 2JW6A 3VDUA 4FKDA 3OXLA 2XRCA 2ENZA 2A20A 1UVFA 2JXDA 1X74A 2CJSC 2N52A 5FUXA 2W0TA 1OYVI 2KCXA 5FUWA 2LEOA 3RU0A 1VDDA 2KMOA 2SGDI 5FUYA 2ERWA 1KBFA 1LR8A 3B4VC 2ODDA 1PJUA 3MEKA 3QTLD 1OVOA 1CGII 2QQEA 2SGFI 3OL0A 2P6AC 1CT0I 1KMAA 3UGLA 1LR7A 1TBNA 2F3CI 1BMOA 1YTPA 4L9MA 5HI7A 2B8TA 4E1PA 1MT1A 1CSOI 1V1HA 1Z7KB 1CE3A 1TGSI 3FC3A 2NU1I 3VDPA 2GKVA 1TBQR 2V1CC 1UUCA 2ELIA 4A24A 2KMPA 2GKRI 3UEJA 2ENNA 1R0RI 2N71A 5CCMA 3SEKC 2VRWB 3GOXA 2KMQA 2QQCA 2NU4I 1V1IA 4UXHA 1Y1BA 1XX6A 3VE5A 1DS2I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LR9 A;  1HJA I;  1BUS A;  1SGQ I;  1CT2 I;  1TIH A;  1NUB A;  3SGB I;  4SGB I;  5JHW C;  2SGQ I;  1SGY I;  1AN1 I;  3HH2 C;  3SGQ I;  1HPT A;  1PCE A;  1N13 A;  3TJQ A;  1TBR R;  1FYB A;  1UVG A;  1YU6 C;  1SGR I;  1M8C A;  2OVO A;  1HDL A;  1SGE I;  1SGP I;  1OMU A;  2BUS A;  1OMT A;  1DS3 I;  1SGN I;  2NU0 I;  1IY5 A;  2V53 A;  4HGU A;  2QQD A;  2N17 A;  2NU2 I;  2M5X A;  1IW4 A;  1PPF I;  1IY6 A;  2KMR A;  1Y1C A;  2SGP I;  1CGJ I;  4OVO A;  2ARP F;  2JYY A;  1H0Z A;  1CT4 I;  1SGD I;  3OVO A;  2WCY A;  1TUS A;  2GKT I;  1CHO I;  1TUR A;  2JZM A;  2SGE I;  2NU3 I;  2B0U C;  4GI3 C;  5DAE A;  1M8B A;  2XRC A;  1UVF A;  2JXD A;  2N52 A;  1OYV I;  2KCX A;  2LEO A;  2KMO A;  2SGD I;  2ERW A;  1LR8 A;  3B4V C;  1PJU A;  3QTL D;  1OVO A;  1CGI I;  2SGF I;  2P6A C;  1CT0 I;  1KMA A;  1LR7 A;  2F3C I;  1BMO A;  1YTP A;  1MT1 A;  1CSO I;  1Z7K B;  1CE3 A;  1TGS I;  2NU1 I;  2GKV A;  1TBQ R;  1UUC A;  2KMP A;  2GKR I;  1R0R I;  2N71 A;  3SEK C;  2KMQ A;  2QQC A;  2NU4 I;  1Y1B A;  1DS2 I; 
#chains in the Genus database with same CATH topology
 1LR9 A;  1HJA I;  1BUS A;  1Y8F A;  3TOA A;  1SGQ I;  4AML A;  5CCL A;  3UGI A;  3R5D A;  2X3T A;  1CT2 I;  1TIH A;  1MJ9 A;  1NUB A;  3SGB I;  3UFF A;  4SGB I;  5JHW C;  2SGQ I;  1WKX A;  1XA6 A;  1PTR A;  1SGY I;  2OD1 A;  1AN1 I;  2OU2 A;  1P9Z A;  2RC4 A;  3HH2 C;  1PTQ A;  1TOT A;  3QAH A;  3SGQ I;  1HPT A;  3FSY A;  1MJB A;  2V1C A;  1PCE A;  1N13 A;  3TJQ A;  1TBR R;  3R5B A;  1FYB A;  1UVG A;  2DB6 A;  2Y0M A;  5FUV A;  3BJI A;  5E3Q A;  1YU6 C;  3CXL A;  1FAQ A;  3KY9 A;  3D00 A;  1WTJ A;  1SGR I;  1M8C A;  2OVO A;  3E2I A;  2E5R A;  3UEY A;  1HDL A;  2LUY A;  2CWH A;  1SGE I;  1SGP I;  1OMU A;  1FY7 A;  5HQ8 A;  2BUS A;  2WVJ A;  1ULM A;  3E59 A;  1KBE A;  1OMT A;  3TO7 A;  1DS3 I;  3UGD A;  4B6D A;  9WGA A;  1SGN I;  2NU0 I;  3OXG A;  1NXU A;  1IY5 A;  1UHA A;  2ORV A;  2V53 A;  5EX0 A;  1W3S A;  1RFH A;  3OXF A;  4HGU A;  2N1A B;  2FNF X;  1XBT A;  2K9H A;  2QQD A;  1X4S A;  4UXI A;  2N17 A;  2NU2 I;  2QQ0 A;  2M5X A;  2E73 A;  4DNC A;  3FSX A;  1IW4 A;  1PPF I;  4UXJ A;  1IY6 A;  2KMR A;  2YQP A;  4E1R A;  3PDN A;  1FAR A;  1Y1C A;  1R79 A;  2SGP I;  1ULN A;  1CGJ I;  3QWP A;  4OVO A;  2ARP F;  2JYY A;  2DKV A;  2JA1 A;  1H0Z A;  1CT4 I;  2QPO A;  4JCV E;  1W4R A;  2GIV A;  2L7X A;  2ORW A;  3OVO A;  2GVI A;  2LB7 A;  4WP4 A;  2WCY A;  2DIP A;  1TUS A;  2GKT I;  1CHO I;  5EX3 A;  1TUR A;  1U5K A;  2J87 A;  5E3P A;  1TBO A;  2JZM A;  2ROW A;  2SGE I;  2YUU A;  1K7U A;  2NU3 I;  2B0U C;  2J9R A;  2UVO A;  4GI3 C;  1WGC A;  2UZ3 A;  4MPI A;  5DAE A;  2L8E A;  2PQ8 A;  1M8B A;  2JW6 A;  1MJA A;  4FKD A;  1WGT A;  1S20 A;  3VDU A;  3OXL A;  2XRC A;  2WGC A;  5J8C A;  2ENZ A;  1HEV A;  2A20 A;  1UVF A;  2JXD A;  1X74 A;  2CJS C;  2X52 A;  2N52 A;  3R5C A;  5FUX A;  3TO9 A;  2W0T A;  1OYV I;  2KCX A;  5FUW A;  2LEO A;  3RU0 A;  1Z2I A;  1VDD A;  2KMO A;  2SGD I;  5FUY A;  7WGA A;  2ERW A;  1KBF A;  1LR8 A;  3B4V C;  2ODD A;  1PJU A;  3MEK A;  3QTL D;  1OVO A;  1CGI I;  2QQE A;  2SGF I;  3OL0 A;  2RIJ A;  2P6A C;  1CT0 I;  1ULK A;  1KMA A;  1Q9B A;  3UGL A;  1LR7 A;  5J8F A;  1TBN A;  2F3C I;  1BMO A;  1YTP A;  3R5A A;  4L9M A;  5HI7 A;  2B8T A;  4E1P A;  1MT1 A;  3UOE A;  1K7V A;  1CSO I;  1V1H A;  2CWF A;  1Z7K B;  1CE3 A;  1TGS I;  2CWG A;  2NU1 I;  3VDP A;  3FC3 A;  2GKV A;  1TBQ R;  2V1C C;  1UUC A;  2ELI A;  3TO6 A;  2OZU A;  4A24 A;  2KMP A;  1Y1B A;  2GKR I;  3UEJ A;  2ENN A;  1R0R I;  2N71 A;  5CCM A;  3SEK C;  3TOB A;  5E3R A;  2VRW B;  1P9G A;  3GOX A;  2KMQ A;  2QQC A;  2NU4 I;  1V1I A;  4UXH A;  1SGD I;  1K7T A;  1XX6 A;  3VE5 A;  1DS2 I; 
#chains in the Genus database with same CATH homology
 1LR9 A;  1HJA I;  1BUS A;  1Y8F A;  1SGQ I;  5CCL A;  3UGI A;  1CT2 I;  1TIH A;  1NUB A;  3SGB I;  3UFF A;  4SGB I;  5JHW C;  2SGQ I;  1XA6 A;  1PTR A;  1SGY I;  2OD1 A;  1AN1 I;  3HH2 C;  3SGQ I;  1PTQ A;  1TOT A;  1HPT A;  2V1C A;  1PCE A;  1N13 A;  3TJQ A;  1TBR R;  1FYB A;  1UVG A;  2DB6 A;  5FUV A;  3BJI A;  1YU6 C;  3CXL A;  3KY9 A;  3D00 A;  3E2I A;  1SGR I;  1M8C A;  2OVO A;  3UEY A;  2E5R A;  1HDL A;  2LUY A;  1SGE I;  1SGP I;  1OMU A;  5HQ8 A;  1FAQ A;  2BUS A;  2WVJ A;  3E59 A;  1KBE A;  1OMT A;  3UGD A;  1DS3 I;  4B6D A;  1SGN I;  2NU0 I;  3OXG A;  1IY5 A;  2ORV A;  2V53 A;  5EX0 A;  1W3S A;  1RFH A;  3OXF A;  4HGU A;  2N1A B;  2FNF X;  1XBT A;  2K9H A;  2QQD A;  1X4S A;  4UXI A;  2N17 A;  2NU2 I;  2QQ0 A;  2M5X A;  2E73 A;  1IW4 A;  1PPF I;  4UXJ A;  1IY6 A;  2KMR A;  2YQP A;  4E1R A;  3PDN A;  1FAR A;  1Y1C A;  1R79 A;  2SGP I;  1CGJ I;  3QWP A;  4OVO A;  2ARP F;  2JYY A;  2JA1 A;  1H0Z A;  1CT4 I;  2QPO A;  4JCV E;  1W4R A;  1SGD I;  2L7X A;  2ORW A;  3OVO A;  2GVI A;  5EX3 A;  2WCY A;  2DIP A;  1TUS A;  2GKT I;  1CHO I;  1TUR A;  1U5K A;  2J87 A;  1TBO A;  2JZM A;  2ROW A;  2SGE I;  2YUU A;  2NU3 I;  2B0U C;  2J9R A;  4GI3 C;  2UZ3 A;  5DAE A;  2L8E A;  1M8B A;  2JW6 A;  3VDU A;  4FKD A;  3OXL A;  2XRC A;  2ENZ A;  2A20 A;  1UVF A;  2JXD A;  1X74 A;  2CJS C;  2N52 A;  5FUX A;  2W0T A;  1OYV I;  2KCX A;  5FUW A;  2LEO A;  3RU0 A;  1VDD A;  2KMO A;  2SGD I;  5FUY A;  2ERW A;  1KBF A;  1LR8 A;  3B4V C;  2ODD A;  1PJU A;  3MEK A;  3QTL D;  1OVO A;  1CGI I;  2QQE A;  2SGF I;  3OL0 A;  2P6A C;  1CT0 I;  1KMA A;  3UGL A;  1LR7 A;  1TBN A;  2F3C I;  1BMO A;  1YTP A;  4L9M A;  5HI7 A;  2B8T A;  4E1P A;  1MT1 A;  1CSO I;  1V1H A;  1Z7K B;  1CE3 A;  1TGS I;  3FC3 A;  2NU1 I;  3VDP A;  2GKV A;  1TBQ R;  2V1C C;  1UUC A;  2ELI A;  4A24 A;  2KMP A;  2GKR I;  3UEJ A;  2ENN A;  1R0R I;  2N71 A;  5CCM A;  3SEK C;  2VRW B;  3GOX A;  2KMQ A;  2QQC A;  2NU4 I;  1V1I A;  4UXH A;  1Y1B A;  1XX6 A;  3VE5 A;  1DS2 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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