3E59A

Crystal structure of the pvca (pa2254) protein from pseudomonas aeruginosa
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
311
structure length
311
Chain Sequence
DTLPARVLKELLLYRRRYPEHRQSASEADEIRRIEQVQLPRIAAFIEAGEPIEFVLPAFPAKSPNPGKVLDSRPDMAERLSLSFLNHLCQRIQLFYAPGAKITVCSDGRVFGDLVRIGDAHISAYQDALRLMIEEIGATHIGVFNLEDVRAFEAQRDNHEQLRQLLIGGYAEPLESIRETLLASEEGLLLYRAITRFLYEDGLTPDYQGSKTALQRDAKERAYGVIQRSWAWGALLADQFPRAIRLSIHPQPADSLKFGIHMMPTRDDWLTPWHGVAVNTEDRFVLMKRSEVLELGGELVQINGQPSHYRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Pyoverdine biosynthesis protein PvcA
publication title Three-dimensional structures of Pseudomonas aeruginosa PvcA and PvcB, two proteins involved in the synthesis of 2-isocyano-6,7-dihydroxycoumarin.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 107
structure length 311
sequence length 311
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05141 DIT1_PvcA Pyoverdine/dityrosine biosynthesis protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.140 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 3e59A02
3E59A
chains in the Genus database with same CATH superfamily
1ULKA 1MJ9A 1X4SA 2GVIA 1K7VA 3UEYA 1S20A 2X52A 1P9GA 4OVOA 1VDDA 2DIPA 1N13A 3HH2C 1OVOA 7WGAA 1YU6C 2UVOA 2CWFA 2ELIA 1Z2IA 1V1HA 3UGLA 1TURA 1FARA 1P9ZA 2NU0I 5FUWA 2ORVA 1WKXA 5CCMA 1MJAA 4AMLA 1NUBA 2A20A 3UGDA 1XA6A 1YTPA 2SGQI 2WCYA 2ARPF 1PCEA 3SGQI 1TBOA 1WTJA 2N52A 2WVJA 1WGCA 3D00A 5E3PA 4E1PA 5FUYA 5JHWC 3PDNA 1UHAA 2E73A 1X74A 3BJIA 1KBEA 1M8BA 2X3TA 3TO7A 2LB7A 3QAHA 2VRWB 3QTLD 2GIVA 1V1IA 3FC3A 2YQPA 2N17A 1XBTA 3VDPA 1H0ZA 1W3SA 1TBNA 2J9RA 5FUXA 3SGBI 2DKVA 2ERWA 2OZUA 3TJQA 2GKRI 4JCVE 2BUSA 1HEVA 1ULNA 3OXFA 1UVGA 1DS3I 1CT0I 1CT2I 1SGQI 2RC4A 5HI7A 3TOAA 1K7UA 1SGYI 4L9MA 4B6DA 2CJSC 3OXLA 2NU4I 2KMQA 3FSXA 3TO6A 1XX6A 3R5DA 1FAQA 1Y1CA 3KY9A 1SGPI 1TOTA 2B8TA 1AN1I 1W4RA 2LUYA 4UXJA 2JZMA 3TO9A 5CCLA 5E3QA 2F3CI 3R5AA 4GI3C 1SGRI 2KMRA 2V1CA 3FSYA 4UXIA 1WGTA 1CGII 2GKTI 2NU1I 3UGIA 2YUUA 5FUVA 2KCXA 1IY5A 2CWHA 4HGUA 1TGSI 2J87A 1PJUA 3VE5A 2RIJA 5HQ8A 2QPOA 1HDLA 2P6AC 2WGCA 1SGEI 2ENZA 1Q9BA 5DAEA 1LR8A 2KMOA 5J8CA 1LR7A 3OL0A 1Y1BA 2SGDI 3R5BA 4E1RA 5EX0A 4A24A 1MT1A 1PPFI 2GKVA 1Z7KB 9WGAA 4FKDA 1FYBA 1OMTA 2QQ0A 2V53A 1CSOI 3OXGA 2ROWA 2Y0MA 2B0UC 1Y8FA 1IW4A 3RU0A 2QQCA 2FNFX 2N71A 1OMUA 1R79A 2LEOA 2ORWA 1DS2I 2UZ3A 3MEKA 3SEKC 2JXDA 1ULMA 4WP4A 2OU2A 3VDUA 2QQDA 1KMAA 5EX3A 3E59A 2KMPA 3CXLA 1HPTA 2NU2I 4SGBI 3R5CA 1CE3A 1M8CA 1SGDI 3UEJA 1RFHA 2DB6A 1MJBA 1PTQA 1UVFA 1NXUA 2ENNA 1OYVI 2CWGA 2JA1A 2SGFI 2XRCA 5J8FA 2N1AB 1IY6A 2JYYA 1CHOI 1K7TA 2V1CC 3QWPA 3UOEA 1SGNI 2L7XA 4UXHA 1R0RI 2M5XA 2NU3I 1TBRR 1BUSA 2W0TA 2K9HA 4DNCA 2PQ8A 1FY7A 1U5KA 1CT4I 2L8EA 3E2IA 1BMOA 1TUSA 2QQEA 3B4VC 5E3RA 3UFFA 2E5RA 2ODDA 2OVOA 1LR9A 1TBQR 2SGEI 4MPIA 1UUCA 1PTRA 2SGPI 3OVOA 1CGJI 1KBFA 1HJAI 3TOBA 1TIHA 2JW6A 3GOXA 2OD1A
chains in the Genus database with same CATH topology
1X4SA 2GVIA 3UEYA 4OVOA 1VDDA 2DIPA 1N13A 3HH2C 1OVOA 1YU6C 2ELIA 1V1HA 3UGLA 1TURA 1FARA 2NU0I 5FUWA 5CCMA 2ORVA 1NUBA 2A20A 3UGDA 1XA6A 1YTPA 2SGQI 2WCYA 2ARPF 1PCEA 3SGQI 1TBOA 2N52A 2WVJA 3D00A 4E1PA 5FUYA 5JHWC 3PDNA 2E73A 1X74A 3BJIA 1KBEA 1M8BA 2VRWB 3QTLD 1V1IA 3FC3A 2YQPA 2N17A 1XBTA 3VDPA 1H0ZA 1W3SA 1TBNA 2J9RA 5FUXA 3SGBI 3TJQA 2ERWA 2GKRI 4JCVE 2BUSA 3OXFA 1UVGA 1DS3I 1CT0I 1CT2I 1SGQI 5HI7A 1SGYI 4L9MA 4B6DA 2CJSC 3OXLA 2NU4I 2KMQA 1XX6A 1FAQA 1Y1CA 3KY9A 1SGPI 1TOTA 2B8TA 1AN1I 1W4RA 2LUYA 4UXJA 2JZMA 5CCLA 2F3CI 4GI3C 1SGRI 2KMRA 2V1CA 4UXIA 1CGII 2GKTI 2NU1I 3UGIA 2YUUA 5FUVA 2KCXA 1IY5A 4HGUA 1TGSI 2J87A 1PJUA 3VE5A 1HDLA 5HQ8A 2QPOA 2P6AC 5DAEA 1SGEI 2ENZA 1LR8A 2KMOA 1LR7A 3OL0A 1Y1BA 2SGDI 4E1RA 5EX0A 4A24A 1MT1A 1PPFI 2GKVA 1Z7KB 4FKDA 1FYBA 1OMTA 2QQ0A 2V53A 1CSOI 3OXGA 2ROWA 2B0UC 1Y8FA 1IW4A 3RU0A 2QQCA 2FNFX 2N71A 1OMUA 1R79A 2LEOA 2ORWA 1DS2I 2UZ3A 3MEKA 3SEKC 2JXDA 3VDUA 2QQDA 1KMAA 5EX3A 3E59A 2KMPA 3CXLA 1HPTA 2NU2I 4SGBI 1CE3A 1M8CA 1SGDI 3UEJA 1RFHA 2DB6A 1PTQA 1UVFA 2ENNA 2JA1A 1OYVI 2SGFI 2XRCA 2N1AB 1IY6A 2JYYA 1CHOI 2V1CC 3QWPA 1SGNI 2L7XA 4UXHA 1R0RI 2M5XA 2NU3I 1TBRR 1BUSA 2W0TA 2K9HA 1U5KA 1CT4I 2L8EA 3E2IA 1BMOA 1TUSA 2QQEA 3B4VC 3UFFA 2E5RA 2ODDA 2OVOA 1LR9A 1TBQR 2SGEI 1UUCA 1PTRA 2SGPI 3OVOA 1CGJI 1KBFA 1HJAI 1TIHA 2JW6A 3GOXA 2OD1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E59 A; 
#chains in the Genus database with same CATH topology
 1ULK A;  1MJ9 A;  1X4S A;  2GVI A;  1K7V A;  3UEY A;  1S20 A;  2X52 A;  1P9G A;  4OVO A;  1VDD A;  2DIP A;  1N13 A;  3HH2 C;  1OVO A;  7WGA A;  1YU6 C;  2UVO A;  2CWF A;  2ELI A;  1Z2I A;  1V1H A;  3UGL A;  1TUR A;  1FAR A;  1P9Z A;  2NU0 I;  5FUW A;  2ORV A;  1WKX A;  5CCM A;  1MJA A;  4AML A;  1NUB A;  2A20 A;  3UGD A;  1XA6 A;  1YTP A;  2SGQ I;  2WCY A;  2ARP F;  1PCE A;  3SGQ I;  1TBO A;  1WTJ A;  2N52 A;  2WVJ A;  1WGC A;  3D00 A;  5E3P A;  4E1P A;  5FUY A;  5JHW C;  3PDN A;  1UHA A;  2E73 A;  1X74 A;  3BJI A;  1KBE A;  1M8B A;  2X3T A;  3TO7 A;  2LB7 A;  3QAH A;  2VRW B;  3QTL D;  2GIV A;  1V1I A;  3FC3 A;  2YQP A;  2N17 A;  1XBT A;  3VDP A;  1H0Z A;  1W3S A;  1TBN A;  2J9R A;  5FUX A;  3SGB I;  2DKV A;  2ERW A;  2OZU A;  3TJQ A;  2GKR I;  4JCV E;  2BUS A;  1HEV A;  1ULN A;  3OXF A;  1UVG A;  1DS3 I;  1CT0 I;  1CT2 I;  1SGQ I;  2RC4 A;  5HI7 A;  3TOA A;  1K7U A;  1SGY I;  4L9M A;  4B6D A;  2CJS C;  3OXL A;  2NU4 I;  2KMQ A;  3FSX A;  3TO6 A;  1XX6 A;  3R5D A;  1FAQ A;  1Y1C A;  3KY9 A;  1SGP I;  1TOT A;  2B8T A;  1AN1 I;  1W4R A;  2LUY A;  4UXJ A;  2JZM A;  3TO9 A;  5CCL A;  5E3Q A;  2F3C I;  3R5A A;  4GI3 C;  1SGR I;  2KMR A;  2V1C A;  3FSY A;  4UXI A;  1WGT A;  1CGI I;  2GKT I;  2NU1 I;  3UGI A;  2YUU A;  5FUV A;  2KCX A;  1IY5 A;  2CWH A;  4HGU A;  1TGS I;  2J87 A;  1PJU A;  3VE5 A;  2RIJ A;  5HQ8 A;  2QPO A;  1HDL A;  2P6A C;  2WGC A;  1SGE I;  2ENZ A;  1Q9B A;  5DAE A;  1LR8 A;  2KMO A;  5J8C A;  1LR7 A;  3OL0 A;  1Y1B A;  2SGD I;  3R5B A;  4E1R A;  5EX0 A;  4A24 A;  1MT1 A;  1PPF I;  2GKV A;  1Z7K B;  9WGA A;  4FKD A;  1FYB A;  1OMT A;  2QQ0 A;  2V53 A;  1CSO I;  3OXG A;  2ROW A;  2Y0M A;  2B0U C;  1Y8F A;  1IW4 A;  3RU0 A;  2QQC A;  2FNF X;  2N71 A;  1OMU A;  1R79 A;  2LEO A;  2ORW A;  1DS2 I;  2UZ3 A;  3MEK A;  3SEK C;  2JXD A;  1ULM A;  4WP4 A;  2OU2 A;  3VDU A;  2QQD A;  1KMA A;  5EX3 A;  3E59 A;  2KMP A;  3CXL A;  1HPT A;  2NU2 I;  4SGB I;  3R5C A;  1CE3 A;  1M8C A;  1SGD I;  3UEJ A;  1RFH A;  2DB6 A;  1MJB A;  1PTQ A;  1UVF A;  1NXU A;  2ENN A;  1OYV I;  2CWG A;  2JA1 A;  2SGF I;  2XRC A;  5J8F A;  2N1A B;  1IY6 A;  2JYY A;  1CHO I;  1K7T A;  2V1C C;  3QWP A;  3UOE A;  1SGN I;  2L7X A;  4UXH A;  1R0R I;  2M5X A;  2NU3 I;  1TBR R;  1BUS A;  2W0T A;  2K9H A;  4DNC A;  2PQ8 A;  1FY7 A;  1U5K A;  1CT4 I;  2L8E A;  3E2I A;  1BMO A;  1TUS A;  2QQE A;  3B4V C;  5E3R A;  3UFF A;  2E5R A;  2ODD A;  2OVO A;  1LR9 A;  1TBQ R;  2SGE I;  4MPI A;  1UUC A;  1PTR A;  2SGP I;  3OVO A;  1CGJ I;  1KBF A;  1HJA I;  3TOB A;  1TIH A;  2JW6 A;  3GOX A;  2OD1 A; 
#chains in the Genus database with same CATH homology
 1X4S A;  2GVI A;  3UEY A;  4OVO A;  1VDD A;  2DIP A;  1N13 A;  3HH2 C;  1OVO A;  1YU6 C;  2ELI A;  1V1H A;  3UGL A;  1TUR A;  1FAR A;  2NU0 I;  5FUW A;  5CCM A;  2ORV A;  1NUB A;  2A20 A;  3UGD A;  1XA6 A;  1YTP A;  2SGQ I;  2WCY A;  2ARP F;  1PCE A;  3SGQ I;  1TBO A;  2N52 A;  2WVJ A;  3D00 A;  4E1P A;  5FUY A;  5JHW C;  3PDN A;  2E73 A;  1X74 A;  3BJI A;  1KBE A;  1M8B A;  2VRW B;  3QTL D;  1V1I A;  3FC3 A;  2YQP A;  2N17 A;  1XBT A;  3VDP A;  1H0Z A;  1W3S A;  1TBN A;  2J9R A;  5FUX A;  3SGB I;  3TJQ A;  2ERW A;  2GKR I;  4JCV E;  2BUS A;  3OXF A;  1UVG A;  1DS3 I;  1CT0 I;  1CT2 I;  1SGQ I;  5HI7 A;  1SGY I;  4L9M A;  4B6D A;  2CJS C;  3OXL A;  2NU4 I;  2KMQ A;  1XX6 A;  1FAQ A;  1Y1C A;  3KY9 A;  1SGP I;  1TOT A;  2B8T A;  1AN1 I;  1W4R A;  2LUY A;  4UXJ A;  2JZM A;  5CCL A;  2F3C I;  4GI3 C;  1SGR I;  2KMR A;  2V1C A;  4UXI A;  1CGI I;  2GKT I;  2NU1 I;  3UGI A;  2YUU A;  5FUV A;  2KCX A;  1IY5 A;  4HGU A;  1TGS I;  2J87 A;  1PJU A;  3VE5 A;  1HDL A;  5HQ8 A;  2QPO A;  2P6A C;  5DAE A;  1SGE I;  2ENZ A;  1LR8 A;  2KMO A;  1LR7 A;  3OL0 A;  1Y1B A;  2SGD I;  4E1R A;  5EX0 A;  4A24 A;  1MT1 A;  1PPF I;  2GKV A;  1Z7K B;  4FKD A;  1FYB A;  1OMT A;  2QQ0 A;  2V53 A;  1CSO I;  3OXG A;  2ROW A;  2B0U C;  1Y8F A;  1IW4 A;  3RU0 A;  2QQC A;  2FNF X;  2N71 A;  1OMU A;  1R79 A;  2LEO A;  2ORW A;  1DS2 I;  2UZ3 A;  3MEK A;  3SEK C;  2JXD A;  3VDU A;  2QQD A;  1KMA A;  5EX3 A;  3E59 A;  2KMP A;  3CXL A;  1HPT A;  2NU2 I;  4SGB I;  1CE3 A;  1M8C A;  1SGD I;  3UEJ A;  1RFH A;  2DB6 A;  1PTQ A;  1UVF A;  2ENN A;  2JA1 A;  1OYV I;  2SGF I;  2XRC A;  2N1A B;  1IY6 A;  2JYY A;  1CHO I;  2V1C C;  3QWP A;  1SGN I;  2L7X A;  4UXH A;  1R0R I;  2M5X A;  2NU3 I;  1TBR R;  1BUS A;  2W0T A;  2K9H A;  1U5K A;  1CT4 I;  2L8E A;  3E2I A;  1BMO A;  1TUS A;  2QQE A;  3B4V C;  3UFF A;  2E5R A;  2ODD A;  2OVO A;  1LR9 A;  1TBQ R;  2SGE I;  1UUC A;  1PTR A;  2SGP I;  3OVO A;  1CGJ I;  1KBF A;  1HJA I;  1TIH A;  2JW6 A;  3GOX A;  2OD1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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