3E59A

Crystal structure of the pvca (pa2254) protein from pseudomonas aeruginosa
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
311
structure length
311
Chain Sequence
b'DTLPARVLKELLLYRRRYPEHRQSASEADEIRRIEQVQLPRIAAFIEAGEPIEFVLPAFPAKSPNPGKVLDSRPDMAERLSLSFLNHLCQRIQLFYAPGAKITVCSDGRVFGDLVRIGDAHISAYQDALRLMIEEIGATHIGVFNLEDVRAFEAQRDNHEQLRQLLIGGYAEPLESIRETLLASEEGLLLYRAITRFLYEDGLTPDYQGSKTALQRDAKERAYGVIQRSWAWGALLADQFPRAIRLSIHPQPADSLKFGIHMMPTRDDWLTPWHGVAVNTEDRFVLMKRSEVLELGGELVQINGQPSHYRL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Pyoverdine biosynthesis protein PvcA
publication title Three-dimensional structures of Pseudomonas aeruginosa PvcA and PvcB, two proteins involved in the synthesis of 2-isocyano-6,7-dihydroxycoumarin.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Transferase
total genus 107
structure length 311
sequence length 311
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05141 DIT1_PvcA Pyoverdine/dityrosine biosynthesis protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.140 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 3e59A02
3E59A
chains in the Genus database with same CATH superfamily
2PQ8A 2M5XA 3VDPA 1PCEA 2QQ0A 2NU0I 4MPIA 2DB6A 3R5AA 3R5DA 1HEVA 3TO6A 1Z7KB 3TO7A 5CCMA 1IY5A 1UVGA 3VDUA 2W0TA 1PTRA 1SGEI 1CE3A 3E2IA 1CT2I 2V1CC 2GVIA 2UZ3A 1TBRR 2CWHA 1R79A 3KY9A 1WGCA 1OYVI 2LUYA 1BUSA 2FNFX 3OXLA 2CWFA 3GOXA 1TBQR 2DIPA 2J9RA 1AN1I 1MJBA 2XRCA 1OMTA 2N71A 2ERWA 4FKDA 2JW6A 2RC4A 1VDDA 3UGLA 2WVJA 2SGFI 2QQEA 2LB7A 5HQ8A 1FY7A 1TOTA 2LEOA 2KCXA 3CXLA 4UXJA 1HDLA 2CJSC 2X52A 2KMOA 2ROWA 1Z2IA 2QQDA 2N52A 2E5RA 2ELIA 2GKRI 3UFFA 1CSOI 1CGII 2GIVA 3OL0A 1LR7A 5E3PA 5E3RA 5EX0A 1PJUA 1WGTA 2X3TA 2KMQA 1SGDI 1M8CA 1W4RA 1CGJI 1PPFI 3FSYA 1CT4I 4UXIA 1M8BA 1KMAA 1HPTA 1V1HA 2V1CA 4OVOA 2YUUA 1FYBA 2JXDA 1P9ZA 2QQCA 5FUYA 3BJIA 3QAHA 3SGBI 2RIJA 4WP4A 5FUVA 2NU3I 2E73A 1NUBA 3SGQI 2CWGA 5DAEA 1LR8A 1SGYI 1XBTA 3TJQA 2DKVA 2WCYA 1MJ9A 2L7XA 1R0RI 3UGIA 4A24A 3TOAA 4GI3C 1U5KA 4B6DA 1TGSI 1MJAA 2K9HA 3SEKC 3HH2C 1IW4A 1SGRI 1FAQA 3MEKA 1HJAI 2GKVA 3OVOA 1OVOA 2KMPA 2F3CI 1V1IA 2JZMA 1IY6A 2JA1A 2L8EA 3UGDA 1X4SA 2N1AB 2P6AC 2WGCA 1UUCA 5J8CA 1ULKA 3E59A 2UVOA 1N13A 1W3SA 2B8TA 4JCVE 4L9MA 1K7UA 1MT1A 1DS2I 1K7TA 1UHAA 2JYYA 5E3QA 1RFHA 2GKTI 1DS3I 4AMLA 1Y1BA 1Y8FA 1XA6A 3FSXA 2B0UC 3RU0A 2OD1A 2V53A 4SGBI 3UEJA 2ODDA 4E1PA 1KBFA 2KMRA 1SGPI 1NXUA 2ENZA 2NU4I 2ORVA 2SGEI 2VRWB 3OXGA 4UXHA 2OVOA 4E1RA 1H0ZA 2SGQI 1YTPA 1TBNA 3PDNA 3D00A 1XX6A 2J87A 5FUWA 2Y0MA 2SGPI 9WGAA 1TBOA 1SGQI 3QWPA 3R5CA 1CT0I 2ENNA 2OU2A 5CCLA 1KBEA 1SGNI 1PTQA 1X74A 2YQPA 3TOBA 1ULNA 2SGDI 2NU1I 4DNCA 1YU6C 1S20A 1FARA 1WKXA 3QTLD 3B4VC 3OXFA 5FUXA 3UOEA 2ORWA 3TO9A 1TIHA 1TURA 1Y1CA 1TUSA 2BUSA 2A20A 2N17A 3FC3A 1UVFA 2NU2I 3VE5A 1K7VA 4HGUA 1LR9A 5J8FA 1Q9BA 2QPOA 5HI7A 1ULMA 1CHOI 2OZUA 3R5BA 7WGAA 5JHWC 5EX3A 1P9GA 2ARPF 1OMUA 1BMOA 3UEYA 1WTJA
chains in the Genus database with same CATH topology
2M5XA 3VDPA 1PCEA 2QQ0A 2NU0I 2DB6A 1Z7KB 5CCMA 1IY5A 1UVGA 3VDUA 2W0TA 1PTRA 1SGEI 1CE3A 3E2IA 1CT2I 2V1CC 2GVIA 2UZ3A 1TBRR 1R79A 3KY9A 1OYVI 1BUSA 2LUYA 2FNFX 3OXLA 3GOXA 1TBQR 2DIPA 2J9RA 1AN1I 4FKDA 2XRCA 1OMTA 2N71A 2ERWA 3UGLA 2JW6A 1VDDA 2WVJA 2SGFI 2QQEA 5HQ8A 1TOTA 2LEOA 2KCXA 3CXLA 4UXJA 1HDLA 2CJSC 2KMOA 2ROWA 2QQDA 2N52A 2E5RA 2ELIA 2GKRI 3UFFA 1CSOI 1CGII 3OL0A 1LR7A 5EX0A 1PJUA 2KMQA 1SGDI 1M8CA 1W4RA 1CGJI 1PPFI 1CT4I 4UXIA 1M8BA 1KMAA 1HPTA 1V1HA 2V1CA 4OVOA 2YUUA 1FYBA 2JXDA 2QQCA 5FUYA 3BJIA 3SGBI 5FUVA 2NU3I 2E73A 1NUBA 3SGQI 5DAEA 3TJQA 1LR8A 1SGYI 1XBTA 3UGIA 1IY6A 2WCYA 2L7XA 1R0RI 4A24A 4GI3C 1U5KA 4B6DA 1TGSI 2K9HA 3SEKC 3HH2C 1IW4A 1SGRI 1FAQA 3MEKA 1HJAI 2GKVA 3OVOA 1OVOA 2KMPA 2F3CI 1V1IA 2JZMA 2JA1A 2L8EA 3UGDA 1X4SA 2N1AB 2P6AC 1UUCA 3E59A 1N13A 1W3SA 2B8TA 4JCVE 4L9MA 1MT1A 1DS2I 2JYYA 1RFHA 2GKTI 1DS3I 1Y1BA 1Y8FA 1XA6A 2B0UC 3RU0A 2OD1A 2V53A 4SGBI 3UEJA 2ODDA 4E1PA 1KBFA 2KMRA 1SGPI 2ENZA 2NU4I 2ORVA 2SGEI 2VRWB 3OXGA 4UXHA 2OVOA 4E1RA 1H0ZA 2SGQI 1YTPA 1TBNA 3PDNA 3D00A 1XX6A 2J87A 5FUWA 2SGPI 1TBOA 1SGQI 3QWPA 1CT0I 2ENNA 5CCLA 1KBEA 1SGNI 1PTQA 1X74A 2YQPA 2SGDI 2NU1I 1YU6C 1FARA 3QTLD 3B4VC 3OXFA 5FUXA 2ORWA 1TIHA 1TURA 1Y1CA 1TUSA 2BUSA 2A20A 2N17A 3FC3A 1UVFA 2NU2I 3VE5A 4HGUA 1LR9A 2QPOA 5HI7A 1CHOI 5JHWC 5EX3A 2ARPF 1OMUA 1BMOA 3UEYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E59 A; 
#chains in the Genus database with same CATH topology
 2PQ8 A;  2M5X A;  3VDP A;  1PCE A;  2QQ0 A;  2NU0 I;  4MPI A;  2DB6 A;  3R5A A;  3R5D A;  1HEV A;  3TO6 A;  1Z7K B;  3TO7 A;  5CCM A;  1IY5 A;  1UVG A;  3VDU A;  2W0T A;  1PTR A;  1SGE I;  1CE3 A;  3E2I A;  1CT2 I;  2V1C C;  2GVI A;  2UZ3 A;  1TBR R;  2CWH A;  1R79 A;  3KY9 A;  1WGC A;  1OYV I;  2LUY A;  1BUS A;  2FNF X;  3OXL A;  2CWF A;  3GOX A;  1TBQ R;  2DIP A;  2J9R A;  1AN1 I;  1MJB A;  2XRC A;  1OMT A;  2N71 A;  2ERW A;  4FKD A;  2JW6 A;  2RC4 A;  1VDD A;  3UGL A;  2WVJ A;  2SGF I;  2QQE A;  2LB7 A;  5HQ8 A;  1FY7 A;  1TOT A;  2LEO A;  2KCX A;  3CXL A;  4UXJ A;  1HDL A;  2CJS C;  2X52 A;  2KMO A;  2ROW A;  1Z2I A;  2QQD A;  2N52 A;  2E5R A;  2ELI A;  2GKR I;  3UFF A;  1CSO I;  1CGI I;  2GIV A;  3OL0 A;  1LR7 A;  5E3P A;  5E3R A;  5EX0 A;  1PJU A;  1WGT A;  2X3T A;  2KMQ A;  1SGD I;  1M8C A;  1W4R A;  1CGJ I;  1PPF I;  3FSY A;  1CT4 I;  4UXI A;  1M8B A;  1KMA A;  1HPT A;  1V1H A;  2V1C A;  4OVO A;  2YUU A;  1FYB A;  2JXD A;  1P9Z A;  2QQC A;  5FUY A;  3BJI A;  3QAH A;  3SGB I;  2RIJ A;  4WP4 A;  5FUV A;  2NU3 I;  2E73 A;  1NUB A;  3SGQ I;  2CWG A;  5DAE A;  1LR8 A;  1SGY I;  1XBT A;  3TJQ A;  2DKV A;  2WCY A;  1MJ9 A;  2L7X A;  1R0R I;  3UGI A;  4A24 A;  3TOA A;  4GI3 C;  1U5K A;  4B6D A;  1TGS I;  1MJA A;  2K9H A;  3SEK C;  3HH2 C;  1IW4 A;  1SGR I;  1FAQ A;  3MEK A;  1HJA I;  2GKV A;  3OVO A;  1OVO A;  2KMP A;  2F3C I;  1V1I A;  2JZM A;  1IY6 A;  2JA1 A;  2L8E A;  3UGD A;  1X4S A;  2N1A B;  2P6A C;  2WGC A;  1UUC A;  5J8C A;  1ULK A;  3E59 A;  2UVO A;  1N13 A;  1W3S A;  2B8T A;  4JCV E;  4L9M A;  1K7U A;  1MT1 A;  1DS2 I;  1K7T A;  1UHA A;  2JYY A;  5E3Q A;  1RFH A;  2GKT I;  1DS3 I;  4AML A;  1Y1B A;  1Y8F A;  1XA6 A;  3FSX A;  2B0U C;  3RU0 A;  2OD1 A;  2V53 A;  4SGB I;  3UEJ A;  2ODD A;  4E1P A;  1KBF A;  2KMR A;  1SGP I;  1NXU A;  2ENZ A;  2NU4 I;  2ORV A;  2SGE I;  2VRW B;  3OXG A;  4UXH A;  2OVO A;  4E1R A;  1H0Z A;  2SGQ I;  1YTP A;  1TBN A;  3PDN A;  3D00 A;  1XX6 A;  2J87 A;  5FUW A;  2Y0M A;  2SGP I;  9WGA A;  1TBO A;  1SGQ I;  3QWP A;  3R5C A;  1CT0 I;  2ENN A;  2OU2 A;  5CCL A;  1KBE A;  1SGN I;  1PTQ A;  1X74 A;  2YQP A;  3TOB A;  1ULN A;  2SGD I;  2NU1 I;  4DNC A;  1YU6 C;  1S20 A;  1FAR A;  1WKX A;  3QTL D;  3B4V C;  3OXF A;  5FUX A;  3UOE A;  2ORW A;  3TO9 A;  1TIH A;  1TUR A;  1Y1C A;  1TUS A;  2BUS A;  2A20 A;  2N17 A;  3FC3 A;  1UVF A;  2NU2 I;  3VE5 A;  1K7V A;  4HGU A;  1LR9 A;  5J8F A;  1Q9B A;  2QPO A;  5HI7 A;  1ULM A;  1CHO I;  2OZU A;  3R5B A;  7WGA A;  5JHW C;  5EX3 A;  1P9G A;  2ARP F;  1OMU A;  1BMO A;  3UEY A;  1WTJ A; 
#chains in the Genus database with same CATH homology
 2M5X A;  3VDP A;  1PCE A;  2QQ0 A;  2NU0 I;  2DB6 A;  1Z7K B;  5CCM A;  1IY5 A;  1UVG A;  3VDU A;  2W0T A;  1PTR A;  1SGE I;  1CE3 A;  3E2I A;  1CT2 I;  2V1C C;  2GVI A;  2UZ3 A;  1TBR R;  1R79 A;  3KY9 A;  1OYV I;  1BUS A;  2LUY A;  2FNF X;  3OXL A;  3GOX A;  1TBQ R;  2DIP A;  2J9R A;  1AN1 I;  4FKD A;  2XRC A;  1OMT A;  2N71 A;  2ERW A;  3UGL A;  2JW6 A;  1VDD A;  2WVJ A;  2SGF I;  2QQE A;  5HQ8 A;  1TOT A;  2LEO A;  2KCX A;  3CXL A;  4UXJ A;  1HDL A;  2CJS C;  2KMO A;  2ROW A;  2QQD A;  2N52 A;  2E5R A;  2ELI A;  2GKR I;  3UFF A;  1CSO I;  1CGI I;  3OL0 A;  1LR7 A;  5EX0 A;  1PJU A;  2KMQ A;  1SGD I;  1M8C A;  1W4R A;  1CGJ I;  1PPF I;  1CT4 I;  4UXI A;  1M8B A;  1KMA A;  1HPT A;  1V1H A;  2V1C A;  4OVO A;  2YUU A;  1FYB A;  2JXD A;  2QQC A;  5FUY A;  3BJI A;  3SGB I;  5FUV A;  2NU3 I;  2E73 A;  1NUB A;  3SGQ I;  5DAE A;  3TJQ A;  1LR8 A;  1SGY I;  1XBT A;  3UGI A;  1IY6 A;  2WCY A;  2L7X A;  1R0R I;  4A24 A;  4GI3 C;  1U5K A;  4B6D A;  1TGS I;  2K9H A;  3SEK C;  3HH2 C;  1IW4 A;  1SGR I;  1FAQ A;  3MEK A;  1HJA I;  2GKV A;  3OVO A;  1OVO A;  2KMP A;  2F3C I;  1V1I A;  2JZM A;  2JA1 A;  2L8E A;  3UGD A;  1X4S A;  2N1A B;  2P6A C;  1UUC A;  3E59 A;  1N13 A;  1W3S A;  2B8T A;  4JCV E;  4L9M A;  1MT1 A;  1DS2 I;  2JYY A;  1RFH A;  2GKT I;  1DS3 I;  1Y1B A;  1Y8F A;  1XA6 A;  2B0U C;  3RU0 A;  2OD1 A;  2V53 A;  4SGB I;  3UEJ A;  2ODD A;  4E1P A;  1KBF A;  2KMR A;  1SGP I;  2ENZ A;  2NU4 I;  2ORV A;  2SGE I;  2VRW B;  3OXG A;  4UXH A;  2OVO A;  4E1R A;  1H0Z A;  2SGQ I;  1YTP A;  1TBN A;  3PDN A;  3D00 A;  1XX6 A;  2J87 A;  5FUW A;  2SGP I;  1TBO A;  1SGQ I;  3QWP A;  1CT0 I;  2ENN A;  5CCL A;  1KBE A;  1SGN I;  1PTQ A;  1X74 A;  2YQP A;  2SGD I;  2NU1 I;  1YU6 C;  1FAR A;  3QTL D;  3B4V C;  3OXF A;  5FUX A;  2ORW A;  1TIH A;  1TUR A;  1Y1C A;  1TUS A;  2BUS A;  2A20 A;  2N17 A;  3FC3 A;  1UVF A;  2NU2 I;  3VE5 A;  4HGU A;  1LR9 A;  2QPO A;  5HI7 A;  1CHO I;  5JHW C;  5EX3 A;  2ARP F;  1OMU A;  1BMO A;  3UEY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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