3E59A

Crystal structure of the pvca (pa2254) protein from pseudomonas aeruginosa
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
311
structure length
311
Chain Sequence
DTLPARVLKELLLYRRRYPEHRQSASEADEIRRIEQVQLPRIAAFIEAGEPIEFVLPAFPAKSPNPGKVLDSRPDMAERLSLSFLNHLCQRIQLFYAPGAKITVCSDGRVFGDLVRIGDAHISAYQDALRLMIEEIGATHIGVFNLEDVRAFEAQRDNHEQLRQLLIGGYAEPLESIRETLLASEEGLLLYRAITRFLYEDGLTPDYQGSKTALQRDAKERAYGVIQRSWAWGALLADQFPRAIRLSIHPQPADSLKFGIHMMPTRDDWLTPWHGVAVNTEDRFVLMKRSEVLELGGELVQINGQPSHYRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Pyoverdine biosynthesis protein PvcA
publication title Three-dimensional structures of Pseudomonas aeruginosa PvcA and PvcB, two proteins involved in the synthesis of 2-isocyano-6,7-dihydroxycoumarin.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 107
structure length 311
sequence length 311
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05141 DIT1_PvcA Pyoverdine/dityrosine biosynthesis protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.140 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 3e59A02
3E59A
chains in the Genus database with same CATH superfamily
4WP4A 2LB7A 1IW4A 2N71A 2LUYA 2SGFI 2NU3I 5FUYA 5DAEA 2DKVA 2V53A 1M8CA 2M5XA 5E3RA 1OMTA 3E59A 2QQDA 2RIJA 1KMAA 2ERWA 3E2IA 2GKVA 4B6DA 4L9MA 2SGDI 1X4SA 1YU6C 1LR7A 1SGRI 2OZUA 2RC4A 3CXLA 3R5CA 3TO9A 3HH2C 1BMOA 1PJUA 1XA6A 3VDUA 2J9RA 2YQPA 2JXDA 1CT2I 1N13A 1HPTA 1P9ZA 1TURA 2ELIA 2WVJA 1CT4I 3FSXA 1PCEA 5E3PA 1SGQI 2GVIA 1FARA 2OD1A 3MEKA 5FUVA 1CE3A 1R79A 3OVOA 1IY6A 2KCXA 3VE5A 2L7XA 2ORWA 1IY5A 1WKXA 2UZ3A 2GKRI 1HEVA 1CGII 3UGIA 2N52A 5E3QA 2WCYA 1FY7A 2JA1A 3R5BA 2X52A 3RU0A 5J8CA 1OYVI 1YTPA 2KMRA 3TOBA 2L8EA 1R0RI 1S20A 5EX3A 1XBTA 3B4VC 1FAQA 1TIHA 2YUUA 2X3TA 1CHOI 5HQ8A 1TOTA 5CCLA 2K9HA 1NXUA 1SGYI 3FSYA 1DS2I 5J8FA 1WGTA 3TO6A 1OVOA 2PQ8A 1HJAI 3FC3A 1MJAA 3SGBI 1Y1BA 4DNCA 1LR9A 1Y8FA 1DS3I 1V1HA 4SGBI 2DB6A 1LR8A 1CSOI 1HDLA 2SGPI 1RFHA 2QQEA 2QPOA 3QTLD 1V1IA 2N17A 4E1RA 2E5RA 1Z2IA 2VRWB 2ENNA 1CT0I 5FUWA 1P9GA 3UEYA 2LEOA 1U5KA 3QAHA 3SEKC 5HI7A 5CCMA 1KBFA 5JHWC 1OMUA 2CWFA 3UGLA 4OVOA 1K7UA 2NU1I 2OU2A 2NU4I 4UXHA 1MT1A 1BUSA 2XRCA 2FNFX 1SGEI 1MJ9A 1TBOA 1X74A 2N1AB 2WGCA 1WTJA 1FYBA 1Q9BA 1Z7KB 2F3CI 4FKDA 2JZMA 3BJIA 1M8BA 1UVGA 2B8TA 3TO7A 1H0ZA 1WGCA 1TUSA 1NUBA 1TBNA 2ARPF 3GOXA 2OVOA 3OL0A 2NU0I 1ULNA 2KMPA 1PTQA 3OXFA 2Y0MA 4MPIA 5EX0A 2GIVA 2V1CC 4AMLA 9WGAA 1VDDA 1K7TA 1TBRR 2QQCA 2V1CA 3PDNA 7WGAA 1TGSI 3UGDA 1ULMA 2CWHA 3TJQA 1SGDI 1K7VA 2ODDA 3OXLA 3KY9A 2B0UC 3R5AA 2DIPA 1SGPI 3UEJA 1TBQR 2ORVA 1PPFI 3UFFA 1UUCA 1SGNI 2GKTI 3UOEA 1Y1CA 2KMQA 4E1PA 2BUSA 1AN1I 4GI3C 4A24A 5FUXA 2JW6A 2KMOA 1CGJI 4UXJA 4JCVE 3VDPA 1PTRA 1W3SA 2ROWA 3D00A 2E73A 1W4RA 2CJSC 3R5DA 2NU2I 2A20A 4HGUA 3TOAA 2CWGA 2SGQI 2SGEI 2QQ0A 2W0TA 3SGQI 1ULKA 1XX6A 2UVOA 2J87A 2P6AC 3OXGA 1KBEA 2ENZA 3QWPA 4UXIA 1UHAA 1UVFA 1MJBA 2JYYA
chains in the Genus database with same CATH topology
1IW4A 2N71A 2LUYA 2SGFI 2NU3I 5FUYA 5DAEA 2V53A 1M8CA 2M5XA 1OMTA 3E59A 2QQDA 1KMAA 2ERWA 3E2IA 2GKVA 4B6DA 4L9MA 2SGDI 1X4SA 1YU6C 1LR7A 1SGRI 3CXLA 1BMOA 1PJUA 1XA6A 3VDUA 2J9RA 2YQPA 2JXDA 1CT2I 1N13A 1HPTA 1TURA 2WVJA 2ELIA 3HH2C 1CT4I 1PCEA 1SGQI 2GVIA 1FARA 2OD1A 3MEKA 5FUVA 1CE3A 1R79A 3OVOA 1IY6A 2KCXA 3VE5A 2L7XA 2ORWA 1IY5A 2UZ3A 2GKRI 1CGII 3UGIA 2N52A 2WCYA 2JA1A 3RU0A 1OYVI 1YTPA 2KMRA 2L8EA 1R0RI 5EX3A 1XBTA 3B4VC 1FAQA 1TIHA 2YUUA 1CHOI 5HQ8A 1TOTA 5CCLA 2K9HA 1SGYI 1DS2I 1OVOA 1HJAI 3FC3A 3SGBI 1Y1BA 1LR9A 1Y8FA 1DS3I 1V1HA 4SGBI 2DB6A 1LR8A 1CSOI 1HDLA 2SGPI 1RFHA 2QQEA 2QPOA 3QTLD 1V1IA 2N17A 4E1RA 2E5RA 2VRWB 5FUWA 2ENNA 1CT0I 3UEYA 2LEOA 1U5KA 3SEKC 5HI7A 5CCMA 1KBFA 1OMUA 3UGLA 4OVOA 2NU1I 2NU4I 4UXHA 1MT1A 1BUSA 2XRCA 2FNFX 1SGEI 1TBOA 1X74A 2N1AB 1FYBA 1Z7KB 2F3CI 4FKDA 2JZMA 3BJIA 1M8BA 2B8TA 1UVGA 1H0ZA 2ARPF 1TUSA 1NUBA 1TBNA 3GOXA 2OVOA 3OL0A 2NU0I 2KMPA 1PTQA 3OXFA 5EX0A 2V1CC 1VDDA 1TBRR 2QQCA 2V1CA 3PDNA 1TGSI 3UGDA 3TJQA 1SGDI 2ODDA 3OXLA 3KY9A 2B0UC 2DIPA 1SGPI 3UEJA 1TBQR 2ORVA 1PPFI 3UFFA 1UUCA 1SGNI 2GKTI 1Y1CA 2KMQA 4E1PA 2BUSA 1AN1I 4GI3C 4A24A 5FUXA 2JW6A 2KMOA 1CGJI 4UXJA 4JCVE 3VDPA 1PTRA 1W3SA 2ROWA 3D00A 2E73A 1W4RA 2CJSC 4HGUA 2NU2I 2A20A 5JHWC 2SGQI 2SGEI 2W0TA 2QQ0A 3SGQI 1XX6A 2J87A 2P6AC 3OXGA 1KBEA 2ENZA 3QWPA 4UXIA 1UVFA 2JYYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E59 A; 
#chains in the Genus database with same CATH topology
 4WP4 A;  2LB7 A;  1IW4 A;  2N71 A;  2LUY A;  2SGF I;  2NU3 I;  5FUY A;  5DAE A;  2DKV A;  2V53 A;  1M8C A;  2M5X A;  5E3R A;  1OMT A;  3E59 A;  2QQD A;  2RIJ A;  1KMA A;  2ERW A;  3E2I A;  2GKV A;  4B6D A;  4L9M A;  2SGD I;  1X4S A;  1YU6 C;  1LR7 A;  1SGR I;  2OZU A;  2RC4 A;  3CXL A;  3R5C A;  3TO9 A;  3HH2 C;  1BMO A;  1PJU A;  1XA6 A;  3VDU A;  2J9R A;  2YQP A;  2JXD A;  1CT2 I;  1N13 A;  1HPT A;  1P9Z A;  1TUR A;  2ELI A;  2WVJ A;  1CT4 I;  3FSX A;  1PCE A;  5E3P A;  1SGQ I;  2GVI A;  1FAR A;  2OD1 A;  3MEK A;  5FUV A;  1CE3 A;  1R79 A;  3OVO A;  1IY6 A;  2KCX A;  3VE5 A;  2L7X A;  2ORW A;  1IY5 A;  1WKX A;  2UZ3 A;  2GKR I;  1HEV A;  1CGI I;  3UGI A;  2N52 A;  5E3Q A;  2WCY A;  1FY7 A;  2JA1 A;  3R5B A;  2X52 A;  3RU0 A;  5J8C A;  1OYV I;  1YTP A;  2KMR A;  3TOB A;  2L8E A;  1R0R I;  1S20 A;  5EX3 A;  1XBT A;  3B4V C;  1FAQ A;  1TIH A;  2YUU A;  2X3T A;  1CHO I;  5HQ8 A;  1TOT A;  5CCL A;  2K9H A;  1NXU A;  1SGY I;  3FSY A;  1DS2 I;  5J8F A;  1WGT A;  3TO6 A;  1OVO A;  2PQ8 A;  1HJA I;  3FC3 A;  1MJA A;  3SGB I;  1Y1B A;  4DNC A;  1LR9 A;  1Y8F A;  1DS3 I;  1V1H A;  4SGB I;  2DB6 A;  1LR8 A;  1CSO I;  1HDL A;  2SGP I;  1RFH A;  2QQE A;  2QPO A;  3QTL D;  1V1I A;  2N17 A;  4E1R A;  2E5R A;  1Z2I A;  2VRW B;  2ENN A;  1CT0 I;  5FUW A;  1P9G A;  3UEY A;  2LEO A;  1U5K A;  3QAH A;  3SEK C;  5HI7 A;  5CCM A;  1KBF A;  5JHW C;  1OMU A;  2CWF A;  3UGL A;  4OVO A;  1K7U A;  2NU1 I;  2OU2 A;  2NU4 I;  4UXH A;  1MT1 A;  1BUS A;  2XRC A;  2FNF X;  1SGE I;  1MJ9 A;  1TBO A;  1X74 A;  2N1A B;  2WGC A;  1WTJ A;  1FYB A;  1Q9B A;  1Z7K B;  2F3C I;  4FKD A;  2JZM A;  3BJI A;  1M8B A;  1UVG A;  2B8T A;  3TO7 A;  1H0Z A;  1WGC A;  1TUS A;  1NUB A;  1TBN A;  2ARP F;  3GOX A;  2OVO A;  3OL0 A;  2NU0 I;  1ULN A;  2KMP A;  1PTQ A;  3OXF A;  2Y0M A;  4MPI A;  5EX0 A;  2GIV A;  2V1C C;  4AML A;  9WGA A;  1VDD A;  1K7T A;  1TBR R;  2QQC A;  2V1C A;  3PDN A;  7WGA A;  1TGS I;  3UGD A;  1ULM A;  2CWH A;  3TJQ A;  1SGD I;  1K7V A;  2ODD A;  3OXL A;  3KY9 A;  2B0U C;  3R5A A;  2DIP A;  1SGP I;  3UEJ A;  1TBQ R;  2ORV A;  1PPF I;  3UFF A;  1UUC A;  1SGN I;  2GKT I;  3UOE A;  1Y1C A;  2KMQ A;  4E1P A;  2BUS A;  1AN1 I;  4GI3 C;  4A24 A;  5FUX A;  2JW6 A;  2KMO A;  1CGJ I;  4UXJ A;  4JCV E;  3VDP A;  1PTR A;  1W3S A;  2ROW A;  3D00 A;  2E73 A;  1W4R A;  2CJS C;  3R5D A;  2NU2 I;  2A20 A;  4HGU A;  3TOA A;  2CWG A;  2SGQ I;  2SGE I;  2QQ0 A;  2W0T A;  3SGQ I;  1ULK A;  1XX6 A;  2UVO A;  2J87 A;  2P6A C;  3OXG A;  1KBE A;  2ENZ A;  3QWP A;  4UXI A;  1UHA A;  1UVF A;  1MJB A;  2JYY A; 
#chains in the Genus database with same CATH homology
 1IW4 A;  2N71 A;  2LUY A;  2SGF I;  2NU3 I;  5FUY A;  5DAE A;  2V53 A;  1M8C A;  2M5X A;  1OMT A;  3E59 A;  2QQD A;  1KMA A;  2ERW A;  3E2I A;  2GKV A;  4B6D A;  4L9M A;  2SGD I;  1X4S A;  1YU6 C;  1LR7 A;  1SGR I;  3CXL A;  1BMO A;  1PJU A;  1XA6 A;  3VDU A;  2J9R A;  2YQP A;  2JXD A;  1CT2 I;  1N13 A;  1HPT A;  1TUR A;  2WVJ A;  2ELI A;  3HH2 C;  1CT4 I;  1PCE A;  1SGQ I;  2GVI A;  1FAR A;  2OD1 A;  3MEK A;  5FUV A;  1CE3 A;  1R79 A;  3OVO A;  1IY6 A;  2KCX A;  3VE5 A;  2L7X A;  2ORW A;  1IY5 A;  2UZ3 A;  2GKR I;  1CGI I;  3UGI A;  2N52 A;  2WCY A;  2JA1 A;  3RU0 A;  1OYV I;  1YTP A;  2KMR A;  2L8E A;  1R0R I;  5EX3 A;  1XBT A;  3B4V C;  1FAQ A;  1TIH A;  2YUU A;  1CHO I;  5HQ8 A;  1TOT A;  5CCL A;  2K9H A;  1SGY I;  1DS2 I;  1OVO A;  1HJA I;  3FC3 A;  3SGB I;  1Y1B A;  1LR9 A;  1Y8F A;  1DS3 I;  1V1H A;  4SGB I;  2DB6 A;  1LR8 A;  1CSO I;  1HDL A;  2SGP I;  1RFH A;  2QQE A;  2QPO A;  3QTL D;  1V1I A;  2N17 A;  4E1R A;  2E5R A;  2VRW B;  5FUW A;  2ENN A;  1CT0 I;  3UEY A;  2LEO A;  1U5K A;  3SEK C;  5HI7 A;  5CCM A;  1KBF A;  1OMU A;  3UGL A;  4OVO A;  2NU1 I;  2NU4 I;  4UXH A;  1MT1 A;  1BUS A;  2XRC A;  2FNF X;  1SGE I;  1TBO A;  1X74 A;  2N1A B;  1FYB A;  1Z7K B;  2F3C I;  4FKD A;  2JZM A;  3BJI A;  1M8B A;  2B8T A;  1UVG A;  1H0Z A;  2ARP F;  1TUS A;  1NUB A;  1TBN A;  3GOX A;  2OVO A;  3OL0 A;  2NU0 I;  2KMP A;  1PTQ A;  3OXF A;  5EX0 A;  2V1C C;  1VDD A;  1TBR R;  2QQC A;  2V1C A;  3PDN A;  1TGS I;  3UGD A;  3TJQ A;  1SGD I;  2ODD A;  3OXL A;  3KY9 A;  2B0U C;  2DIP A;  1SGP I;  3UEJ A;  1TBQ R;  2ORV A;  1PPF I;  3UFF A;  1UUC A;  1SGN I;  2GKT I;  1Y1C A;  2KMQ A;  4E1P A;  2BUS A;  1AN1 I;  4GI3 C;  4A24 A;  5FUX A;  2JW6 A;  2KMO A;  1CGJ I;  4UXJ A;  4JCV E;  3VDP A;  1PTR A;  1W3S A;  2ROW A;  3D00 A;  2E73 A;  1W4R A;  2CJS C;  4HGU A;  2NU2 I;  2A20 A;  5JHW C;  2SGQ I;  2SGE I;  2W0T A;  2QQ0 A;  3SGQ I;  1XX6 A;  2J87 A;  2P6A C;  3OXG A;  1KBE A;  2ENZ A;  3QWP A;  4UXI A;  1UVF A;  2JYY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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