4E1RA

Crystal structure of the dimerization domain of lsr2 from mycobacterium tuberculosis in the p 31 2 1 space group
Total Genus 11
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
55
structure length
55
Chain Sequence
b'KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb
molecule keywords Protein lsr2
source organism Mycobacterium tuberculosis
molecule tags Dna binding protein
total genus 11
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.230 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4e1rA00
4E1PA 4E1RA
chains in the Genus database with same CATH superfamily
2GKRI 1ULKA 1HEVA 2ARPF 1NUBA 1XX6A 1SGRI 2E73A 2L7XA 1Z2IA 2LUYA 2ROWA 4WP4A 4E1PA 1U5KA 1UVFA 1NXUA 5FUVA 1Q9BA 1K7TA 2Y0MA 1DS3I 2JA1A 2WVJA 2B0UC 2J9RA 2M5XA 2NU3I 2W0TA 3UEJA 1TBNA 2XRCA 1PPFI 1S20A 5EX0A 1VDDA 3CXLA 1TURA 5HI7A 1KBFA 1SGQI 2JZMA 5J8CA 2DIPA 1SGEI 2PQ8A 2N1AB 3PDNA 2P6AC 3FSXA 3QWPA 2YQPA 2YUUA 2V1CC 5E3PA 4B6DA 1IW4A 1HDLA 3VDPA 4AMLA 1DS2I 3BJIA 1P9ZA 2GIVA 3FC3A 1M8CA 1XA6A 2JW6A 2ERWA 1OYVI 2B8TA 2NU4I 1PCEA 2SGQI 3MEKA 1YTPA 2BUSA 2QQDA 2SGEI 4GI3C 3GOXA 2LB7A 3TO9A 3SGBI 4A24A 2DKVA 3TOAA 1CT4I 3KY9A 1LR8A 1BUSA 4L9MA 1WKXA 3OVOA 1TBOA 2KCXA 2LEOA 1XBTA 3OXGA 3UOEA 1Z7KB 2SGDI 2CJSC 3TOBA 1MJ9A 4JCVE 2GKVA 1P9GA 1SGPI 2VRWB 1X74A 2ODDA 2OVOA 3HH2C 2A20A 2QPOA 4FKDA 2X3TA 1TIHA 3SGQI 3UGDA 2CWHA 1K7UA 3UFFA 1PTQA 2ORVA 4DNCA 1AN1I 1OVOA 2NU0I 1FARA 2ENNA 5CCMA 1SGDI 1CT2I 1UVGA 2CWFA 2KMPA 3D00A 3R5CA 3VE5A 4UXHA 1FAQA 1W4RA 1WGTA 1CSOI 1UUCA 1CGII 1YU6C 2QQEA 2V1CA 2V53A 2OZUA 1M8BA 2L8EA 2JYYA 2KMRA 2UZ3A 2WGCA 1IY6A 3RU0A 1PTRA 1W3SA 3TO7A 1CE3A 1MJAA 5E3QA 2QQCA 5FUYA 3OL0A 1FY7A 2KMOA 2DB6A 1TBQR 5J8FA 2OU2A 3OXFA 1MT1A 1CHOI 2ELIA 1BMOA 1WTJA 2UVOA 3QAHA 2RC4A 3B4VC 3R5BA 1Y8FA 1LR9A 2ENZA 2FNFX 4SGBI 3SEKC 2GKTI 3UGIA 1WGCA 2X52A 3VDUA 3FSYA 5DAEA 1OMUA 5CCLA 2OD1A 1ULNA 2N17A 2NU2I 1PJUA 1ULMA 2JXDA 1CT0I 2NU1I 2E5RA 9WGAA 2WCYA 2K9HA 5FUXA 1SGNI 1CGJI 1R79A 2F3CI 1Y1CA 4HGUA 1R0RI 3R5AA 1H0ZA 1K7VA 1OMTA 5JHWC 1FYBA 2J87A 5EX3A 3UEYA 5HQ8A 1LR7A 3E59A 4UXIA 1V1IA 3E2IA 3OXLA 3R5DA 2KMQA 1HPTA 1N13A 4MPIA 1HJAI 3UGLA 1IY5A 1TBRR 1X4SA 1Y1BA 4UXJA 4E1RA 3QTLD 1KBEA 1TUSA 2CWGA 2ORWA 2QQ0A 2SGPI 1UHAA 2N52A 5FUWA 4OVOA 1V1HA 7WGAA 1MJBA 1KMAA 1TOTA 1RFHA 1SGYI 2GVIA 2SGFI 5E3RA 3TO6A 2N71A 1TGSI 2RIJA 3TJQA
chains in the Genus database with same CATH topology
2GKRI 2ARPF 1XX6A 1NUBA 1SGRI 2E73A 2L7XA 2LUYA 2ROWA 4E1PA 1U5KA 1UVFA 5FUVA 1DS3I 2JA1A 2WVJA 2B0UC 2J9RA 2M5XA 2NU3I 2W0TA 3UEJA 1TBNA 2XRCA 1PPFI 5EX0A 1VDDA 3CXLA 1TURA 5HI7A 1KBFA 1SGQI 2JZMA 2DIPA 1SGEI 2N1AB 3PDNA 2P6AC 3QWPA 2YQPA 2YUUA 2V1CC 4B6DA 1IW4A 1HDLA 3VDPA 1DS2I 3BJIA 3FC3A 1M8CA 1XA6A 2JW6A 2ERWA 1OYVI 2B8TA 2NU4I 1PCEA 2SGQI 3MEKA 1YTPA 2BUSA 2QQDA 2SGEI 4GI3C 3GOXA 3SGBI 4A24A 1CT4I 3KY9A 1LR8A 1BUSA 4L9MA 3OVOA 1TBOA 2KCXA 2LEOA 1XBTA 3OXGA 1Z7KB 2SGDI 2CJSC 4JCVE 2GKVA 1SGPI 2VRWB 1X74A 2ODDA 2OVOA 3HH2C 2A20A 2QPOA 4FKDA 1TIHA 3SGQI 3UGDA 3UFFA 1PTQA 2ORVA 1AN1I 1OVOA 2NU0I 1FARA 2ENNA 5CCMA 1SGDI 1CT2I 1UVGA 2KMPA 3D00A 3VE5A 1FAQA 4UXHA 1W4RA 1CSOI 1UUCA 1CGII 1YU6C 2QQEA 2V1CA 2V53A 1M8BA 2L8EA 2JYYA 2KMRA 2UZ3A 1IY6A 3RU0A 1PTRA 1W3SA 1CE3A 2QQCA 5FUYA 3OL0A 2KMOA 2DB6A 1TBQR 3OXFA 1MT1A 1CHOI 2ELIA 1BMOA 3B4VC 1Y8FA 1LR9A 2ENZA 2FNFX 4SGBI 3SEKC 2GKTI 3UGIA 3VDUA 5CCLA 5DAEA 1OMUA 2OD1A 2N17A 2NU2I 1PJUA 2JXDA 1CT0I 2NU1I 2E5RA 2WCYA 2K9HA 5FUXA 1SGNI 1CGJI 1R79A 2F3CI 1Y1CA 4HGUA 1R0RI 1H0ZA 1OMTA 5JHWC 1FYBA 2J87A 5EX3A 3UEYA 5HQ8A 1LR7A 3E59A 4UXIA 1V1IA 3E2IA 3OXLA 2KMQA 1HPTA 1N13A 1HJAI 3UGLA 1IY5A 1TBRR 1X4SA 1Y1BA 4UXJA 4E1RA 3QTLD 1KBEA 1TUSA 2ORWA 2QQ0A 2SGPI 2N52A 5FUWA 4OVOA 1V1HA 1KMAA 1TOTA 1RFHA 1SGYI 2GVIA 2SGFI 2N71A 1TGSI 3TJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1P A;  4E1R A; 
#chains in the Genus database with same CATH topology
 2GKR I;  1ULK A;  1HEV A;  2ARP F;  1NUB A;  1XX6 A;  1SGR I;  2E73 A;  2L7X A;  1Z2I A;  2LUY A;  2ROW A;  4WP4 A;  4E1P A;  1U5K A;  1UVF A;  1NXU A;  5FUV A;  1Q9B A;  1K7T A;  2Y0M A;  1DS3 I;  2JA1 A;  2WVJ A;  2B0U C;  2J9R A;  2M5X A;  2NU3 I;  2W0T A;  3UEJ A;  1TBN A;  2XRC A;  1PPF I;  1S20 A;  5EX0 A;  1VDD A;  3CXL A;  1TUR A;  5HI7 A;  1KBF A;  1SGQ I;  2JZM A;  5J8C A;  2DIP A;  1SGE I;  2PQ8 A;  2N1A B;  3PDN A;  2P6A C;  3FSX A;  3QWP A;  2YQP A;  2YUU A;  2V1C C;  5E3P A;  4B6D A;  1IW4 A;  1HDL A;  3VDP A;  4AML A;  1DS2 I;  3BJI A;  1P9Z A;  2GIV A;  3FC3 A;  1M8C A;  1XA6 A;  2JW6 A;  2ERW A;  1OYV I;  2B8T A;  2NU4 I;  1PCE A;  2SGQ I;  3MEK A;  1YTP A;  2BUS A;  2QQD A;  2SGE I;  4GI3 C;  3GOX A;  2LB7 A;  3TO9 A;  3SGB I;  4A24 A;  2DKV A;  3TOA A;  1CT4 I;  3KY9 A;  1LR8 A;  1BUS A;  4L9M A;  1WKX A;  3OVO A;  1TBO A;  2KCX A;  2LEO A;  1XBT A;  3OXG A;  3UOE A;  1Z7K B;  2SGD I;  2CJS C;  3TOB A;  1MJ9 A;  4JCV E;  2GKV A;  1P9G A;  1SGP I;  2VRW B;  1X74 A;  2ODD A;  2OVO A;  3HH2 C;  2A20 A;  2QPO A;  4FKD A;  2X3T A;  1TIH A;  3SGQ I;  3UGD A;  2CWH A;  1K7U A;  3UFF A;  1PTQ A;  2ORV A;  4DNC A;  1AN1 I;  1OVO A;  2NU0 I;  1FAR A;  2ENN A;  5CCM A;  1SGD I;  1CT2 I;  1UVG A;  2CWF A;  2KMP A;  3D00 A;  3R5C A;  3VE5 A;  4UXH A;  1FAQ A;  1W4R A;  1WGT A;  1CSO I;  1UUC A;  1CGI I;  1YU6 C;  2QQE A;  2V1C A;  2V53 A;  2OZU A;  1M8B A;  2L8E A;  2JYY A;  2KMR A;  2UZ3 A;  2WGC A;  1IY6 A;  3RU0 A;  1PTR A;  1W3S A;  3TO7 A;  1CE3 A;  1MJA A;  5E3Q A;  2QQC A;  5FUY A;  3OL0 A;  1FY7 A;  2KMO A;  2DB6 A;  1TBQ R;  5J8F A;  2OU2 A;  3OXF A;  1MT1 A;  1CHO I;  2ELI A;  1BMO A;  1WTJ A;  2UVO A;  3QAH A;  2RC4 A;  3B4V C;  3R5B A;  1Y8F A;  1LR9 A;  2ENZ A;  2FNF X;  4SGB I;  3SEK C;  2GKT I;  3UGI A;  1WGC A;  2X52 A;  3VDU A;  3FSY A;  5DAE A;  1OMU A;  5CCL A;  2OD1 A;  1ULN A;  2N17 A;  2NU2 I;  1PJU A;  1ULM A;  2JXD A;  1CT0 I;  2NU1 I;  2E5R A;  9WGA A;  2WCY A;  2K9H A;  5FUX A;  1SGN I;  1CGJ I;  1R79 A;  2F3C I;  1Y1C A;  4HGU A;  1R0R I;  3R5A A;  1H0Z A;  1K7V A;  1OMT A;  5JHW C;  1FYB A;  2J87 A;  5EX3 A;  3UEY A;  5HQ8 A;  1LR7 A;  3E59 A;  4UXI A;  1V1I A;  3E2I A;  3OXL A;  3R5D A;  2KMQ A;  1HPT A;  1N13 A;  4MPI A;  1HJA I;  3UGL A;  1IY5 A;  1TBR R;  1X4S A;  1Y1B A;  4UXJ A;  4E1R A;  3QTL D;  1KBE A;  1TUS A;  2CWG A;  2ORW A;  2QQ0 A;  2SGP I;  1UHA A;  2N52 A;  5FUW A;  4OVO A;  1V1H A;  7WGA A;  1MJB A;  1KMA A;  1TOT A;  1RFH A;  1SGY I;  2GVI A;  2SGF I;  5E3R A;  3TO6 A;  2N71 A;  1TGS I;  2RIJ A;  3TJQ A; 
#chains in the Genus database with same CATH homology
 2GKR I;  2ARP F;  1XX6 A;  1NUB A;  1SGR I;  2E73 A;  2L7X A;  2LUY A;  2ROW A;  4E1P A;  1U5K A;  1UVF A;  5FUV A;  1DS3 I;  2JA1 A;  2WVJ A;  2B0U C;  2J9R A;  2M5X A;  2NU3 I;  2W0T A;  3UEJ A;  1TBN A;  2XRC A;  1PPF I;  5EX0 A;  1VDD A;  3CXL A;  1TUR A;  5HI7 A;  1KBF A;  1SGQ I;  2JZM A;  2DIP A;  1SGE I;  2N1A B;  3PDN A;  2P6A C;  3QWP A;  2YQP A;  2YUU A;  2V1C C;  4B6D A;  1IW4 A;  1HDL A;  3VDP A;  1DS2 I;  3BJI A;  3FC3 A;  1M8C A;  1XA6 A;  2JW6 A;  2ERW A;  1OYV I;  2B8T A;  2NU4 I;  1PCE A;  2SGQ I;  3MEK A;  1YTP A;  2BUS A;  2QQD A;  2SGE I;  4GI3 C;  3GOX A;  3SGB I;  4A24 A;  1CT4 I;  3KY9 A;  1LR8 A;  1BUS A;  4L9M A;  3OVO A;  1TBO A;  2KCX A;  2LEO A;  1XBT A;  3OXG A;  1Z7K B;  2SGD I;  2CJS C;  4JCV E;  2GKV A;  1SGP I;  2VRW B;  1X74 A;  2ODD A;  2OVO A;  3HH2 C;  2A20 A;  2QPO A;  4FKD A;  1TIH A;  3SGQ I;  3UGD A;  3UFF A;  1PTQ A;  2ORV A;  1AN1 I;  1OVO A;  2NU0 I;  1FAR A;  2ENN A;  5CCM A;  1SGD I;  1CT2 I;  1UVG A;  2KMP A;  3D00 A;  3VE5 A;  1FAQ A;  4UXH A;  1W4R A;  1CSO I;  1UUC A;  1CGI I;  1YU6 C;  2QQE A;  2V1C A;  2V53 A;  1M8B A;  2L8E A;  2JYY A;  2KMR A;  2UZ3 A;  1IY6 A;  3RU0 A;  1PTR A;  1W3S A;  1CE3 A;  2QQC A;  5FUY A;  3OL0 A;  2KMO A;  2DB6 A;  1TBQ R;  3OXF A;  1MT1 A;  1CHO I;  2ELI A;  1BMO A;  3B4V C;  1Y8F A;  1LR9 A;  2ENZ A;  2FNF X;  4SGB I;  3SEK C;  2GKT I;  3UGI A;  3VDU A;  5CCL A;  5DAE A;  1OMU A;  2OD1 A;  2N17 A;  2NU2 I;  1PJU A;  2JXD A;  1CT0 I;  2NU1 I;  2E5R A;  2WCY A;  2K9H A;  5FUX A;  1SGN I;  1CGJ I;  1R79 A;  2F3C I;  1Y1C A;  4HGU A;  1R0R I;  1H0Z A;  1OMT A;  5JHW C;  1FYB A;  2J87 A;  5EX3 A;  3UEY A;  5HQ8 A;  1LR7 A;  3E59 A;  4UXI A;  1V1I A;  3E2I A;  3OXL A;  2KMQ A;  1HPT A;  1N13 A;  1HJA I;  3UGL A;  1IY5 A;  1TBR R;  1X4S A;  1Y1B A;  4UXJ A;  4E1R A;  3QTL D;  1KBE A;  1TUS A;  2ORW A;  2QQ0 A;  2SGP I;  2N52 A;  5FUW A;  4OVO A;  1V1H A;  1KMA A;  1TOT A;  1RFH A;  1SGY I;  2GVI A;  2SGF I;  2N71 A;  1TGS I;  3TJQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...