The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
11
|
sequence length |
55
|
structure length |
55
|
Chain Sequence |
KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein
|
| source organism |
Mycobacterium tuberculosis
|
| publication title |
The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb |
| molecule keywords |
Protein lsr2
|
| total genus |
11
|
| structure length |
55
|
| sequence length |
55
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-03-06 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Wheat Germ Agglutinin (Isolectin 2); domain 1 |
#chains in the Genus database with same CATH superfamily 4E1R A; 4E1P A; #chains in the Genus database with same CATH topology 2QQC A; 1Z7K B; 1SGQ I; 3CXL A; 1V1I A; 3E59 A; 1PCE A; 2ENN A; 1KMA A; 2LUY A; 3VDU A; 1OMU A; 2V1C C; 2KMR A; 2E5R A; 2NU3 I; 2NU2 I; 2SGD I; 3PDN A; 4OVO A; 2N52 A; 1K7V A; 1YTP A; 1LR9 A; 5HQ8 A; 2QQ0 A; 1K7U A; 2CWF A; 5HI7 A; 4UXJ A; 1BUS A; 1IY6 A; 1UUC A; 5FUX A; 2E73 A; 2JW6 A; 2XRC A; 3E2I A; 1UHA A; 3SGB I; 2NU0 I; 2P6A C; 3FSY A; 2YUU A; 2OVO A; 1CT4 I; 2QPO A; 3OXG A; 5EX3 A; 1IY5 A; 1FYB A; 1Y1C A; 3UFF A; 4GI3 C; 1OMT A; 3TO7 A; 1CGJ I; 2J87 A; 2SGP I; 1TGS I; 2Y0M A; 1MJ9 A; 1M8B A; 1FY7 A; 1OYV I; 1K7T A; 2ORW A; 3FSX A; 1WKX A; 1LR7 A; 1SGE I; 1V1H A; 1ULK A; 2ELI A; 1CT2 I; 2GKV A; 2JXD A; 3R5D A; 3BJI A; 1VDD A; 2GVI A; 2M5X A; 3QWP A; 4UXH A; 1ULN A; 1BMO A; 2F3C I; 2CWH A; 5JHW C; 1CGI I; 3VDP A; 2DB6 A; 2SGQ I; 3UEY A; 1CE3 A; 1MT1 A; 7WGA A; 1PTQ A; 1X4S A; 2CWG A; 3SGQ I; 2LEO A; 2FNF X; 3SEK C; 1HPT A; 1CSO I; 2V53 A; 5J8F A; 1IW4 A; 1PTR A; 1TBN A; 2V1C A; 2B0U C; 3KY9 A; 4SGB I; 2BUS A; 1HDL A; 4UXI A; 2OU2 A; 2PQ8 A; 3TO9 A; 1SGD I; 3OVO A; 4E1P A; 1FAQ A; 2ENZ A; 3HH2 C; 2X3T A; 5J8C A; 2VRW B; 1PJU A; 1KBE A; 1Y8F A; 1X74 A; 2CJS C; 2KMQ A; 2JYY A; 2UVO A; 2W0T A; 1Z2I A; 3R5C A; 1WGT A; 3UGI A; 4B6D A; 1P9Z A; 1TIH A; 1Y1B A; 2A20 A; 3UEJ A; 4MPI A; 5EX0 A; 3TJQ A; 1NUB A; 2KMP A; 1RFH A; 3RU0 A; 1SGR I; 3QTL D; 1SGP I; 3MEK A; 1AN1 I; 1TBO A; 2LB7 A; 3TO6 A; 3TOA A; 2B8T A; 4HGU A; 2WVJ A; 3UOE A; 2DKV A; 5CCM A; 1DS2 I; 1YU6 C; 5FUW A; 2YQP A; 4JCV E; 3VE5 A; 2NU1 I; 4A24 A; 1KBF A; 2ARP F; 1FAR A; 5E3Q A; 2KMO A; 1MJA A; 1TUR A; 2ODD A; 2QQD A; 1WTJ A; 9WGA A; 3GOX A; 1DS3 I; 2GIV A; 2JZM A; 3R5A A; 1M8C A; 1SGY I; 1CHO I; 1MJB A; 3UGD A; 1P9G A; 2DIP A; 2N71 A; 4DNC A; 4E1R A; 1S20 A; 5E3P A; 4AML A; 1W4R A; 1WGC A; 2GKT I; 1R0R I; 1R79 A; 1TOT A; 4L9M A; 2J9R A; 2L8E A; 3QAH A; 4FKD A; 2SGF I; 1PPF I; 1U5K A; 3TOB A; 3FC3 A; 1XBT A; 1TBR R; 1HEV A; 2OD1 A; 3OXF A; 2WGC A; 1LR8 A; 2RIJ A; 5FUY A; 2ORV A; 3B4V C; 1NXU A; 2KCX A; 2N17 A; 2ERW A; 2OZU A; 2N1A B; 2WCY A; 2X52 A; 5E3R A; 5FUV A; 4WP4 A; 2SGE I; 1XX6 A; 2K9H A; 1W3S A; 3OL0 A; 3OXL A; 1TBQ R; 2RC4 A; 1UVF A; 1H0Z A; 2JA1 A; 5CCL A; 1UVG A; 3UGL A; 3R5B A; 1N13 A; 5DAE A; 1CT0 I; 1Q9B A; 2GKR I; 2NU4 I; 1HJA I; 1ULM A; 2ROW A; 1OVO A; 2L7X A; 1TUS A; 2QQE A; 2UZ3 A; 3D00 A; 1SGN I; 1XA6 A; #chains in the Genus database with same CATH homology 2QQC A; 1Z7K B; 1SGQ I; 3CXL A; 1V1I A; 3E59 A; 1PCE A; 2ENN A; 1KMA A; 2LUY A; 3VDU A; 1OMU A; 2V1C C; 2KMR A; 2E5R A; 2NU3 I; 2NU2 I; 2SGD I; 3PDN A; 4OVO A; 2N52 A; 3SGQ I; 1YTP A; 1LR9 A; 5HQ8 A; 2QQ0 A; 5HI7 A; 4UXJ A; 1BUS A; 1IY6 A; 1UUC A; 5FUX A; 2E73 A; 2JW6 A; 2XRC A; 3E2I A; 3SGB I; 2NU0 I; 2P6A C; 2YUU A; 2OVO A; 1CT4 I; 2QPO A; 3OXG A; 5EX3 A; 1IY5 A; 1FYB A; 1Y1C A; 3UFF A; 4GI3 C; 1OMT A; 1CGJ I; 2J87 A; 2SGP I; 1TGS I; 1M8B A; 1OYV I; 2ORW A; 1LR7 A; 1SGE I; 1V1H A; 2ELI A; 2GKV A; 1CT2 I; 2JXD A; 3BJI A; 1VDD A; 2GVI A; 2M5X A; 3QWP A; 4UXH A; 1BMO A; 2F3C I; 5JHW C; 1CGI I; 3VDP A; 2DB6 A; 2SGQ I; 3UEY A; 1CE3 A; 1MT1 A; 1PTQ A; 1X4S A; 2LEO A; 2FNF X; 3SEK C; 1HPT A; 1CSO I; 2V53 A; 1IW4 A; 1PTR A; 1TBN A; 2V1C A; 2B0U C; 3KY9 A; 4SGB I; 2BUS A; 1HDL A; 4UXI A; 4E1P A; 1FAQ A; 1SGD I; 3OVO A; 2ENZ A; 3HH2 C; 2VRW B; 1PJU A; 2CJS C; 1Y8F A; 1X74 A; 1KBE A; 2KMQ A; 2JYY A; 2W0T A; 3UGI A; 4B6D A; 1TIH A; 1Y1B A; 2A20 A; 3UEJ A; 5EX0 A; 3TJQ A; 1NUB A; 2KMP A; 1RFH A; 3RU0 A; 1SGR I; 3QTL D; 1SGP I; 3MEK A; 1AN1 I; 1TBO A; 2B8T A; 4HGU A; 2WVJ A; 5CCM A; 1DS2 I; 1YU6 C; 5FUW A; 2YQP A; 4JCV E; 3VE5 A; 2NU1 I; 4A24 A; 1KBF A; 2ARP F; 1FAR A; 2KMO A; 1TUR A; 2ODD A; 2QQD A; 3GOX A; 1DS3 I; 2JZM A; 1M8C A; 1SGY I; 1CHO I; 3UGD A; 2DIP A; 2N71 A; 4E1R A; 1W4R A; 2GKT I; 1R0R I; 1R79 A; 1TOT A; 4L9M A; 2J9R A; 2L8E A; 4FKD A; 2SGF I; 1PPF I; 1U5K A; 3FC3 A; 1XBT A; 1TBR R; 2OD1 A; 3OXF A; 1LR8 A; 5FUY A; 2ORV A; 3B4V C; 2KCX A; 2N17 A; 2WCY A; 2ERW A; 5FUV A; 2N1A B; 2SGE I; 1XX6 A; 2K9H A; 1W3S A; 3OL0 A; 3OXL A; 1TBQ R; 1UVF A; 1H0Z A; 2JA1 A; 5CCL A; 1UVG A; 3UGL A; 1N13 A; 5DAE A; 1CT0 I; 2GKR I; 2NU4 I; 1HJA I; 2ROW A; 1OVO A; 2L7X A; 1TUS A; 2QQE A; 2UZ3 A; 3D00 A; 1SGN I; 1XA6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
