4E1RA

Crystal structure of the dimerization domain of lsr2 from mycobacterium tuberculosis in the p 31 2 1 space group
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
55
structure length
55
Chain Sequence
KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Mycobacterium tuberculosis
publication title The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb
molecule keywords Protein lsr2
total genus 11
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.230 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4e1rA00
4E1RA 4E1PA
chains in the Genus database with same CATH superfamily
2QQCA 1Z7KB 1SGQI 3CXLA 1V1IA 3E59A 1PCEA 2ENNA 1KMAA 2LUYA 3VDUA 1OMUA 2V1CC 2KMRA 2E5RA 2NU3I 2NU2I 2SGDI 3PDNA 4OVOA 2N52A 1K7VA 1YTPA 1LR9A 5HQ8A 2QQ0A 1K7UA 2CWFA 5HI7A 4UXJA 1BUSA 1IY6A 1UUCA 5FUXA 2E73A 2JW6A 2XRCA 3E2IA 1UHAA 3SGBI 2NU0I 2P6AC 3FSYA 2YUUA 2OVOA 1CT4I 2QPOA 3OXGA 5EX3A 1IY5A 1FYBA 1Y1CA 3UFFA 4GI3C 1OMTA 3TO7A 1CGJI 2J87A 2SGPI 1TGSI 2Y0MA 1MJ9A 1M8BA 1FY7A 1OYVI 1K7TA 2ORWA 3FSXA 1WKXA 1LR7A 1SGEI 1V1HA 1ULKA 2ELIA 1CT2I 2GKVA 2JXDA 3R5DA 3BJIA 1VDDA 2GVIA 2M5XA 3QWPA 4UXHA 1ULNA 1BMOA 2F3CI 2CWHA 5JHWC 1CGII 3VDPA 2DB6A 2SGQI 3UEYA 1CE3A 1MT1A 7WGAA 1PTQA 1X4SA 2CWGA 3SGQI 2LEOA 2FNFX 3SEKC 1HPTA 1CSOI 2V53A 5J8FA 1IW4A 1PTRA 1TBNA 2V1CA 2B0UC 3KY9A 4SGBI 2BUSA 1HDLA 4UXIA 2OU2A 2PQ8A 3TO9A 1SGDI 3OVOA 4E1PA 1FAQA 2ENZA 3HH2C 2X3TA 5J8CA 2VRWB 1PJUA 1KBEA 1Y8FA 1X74A 2CJSC 2KMQA 2JYYA 2UVOA 2W0TA 1Z2IA 3R5CA 1WGTA 3UGIA 4B6DA 1P9ZA 1TIHA 1Y1BA 2A20A 3UEJA 4MPIA 5EX0A 3TJQA 1NUBA 2KMPA 1RFHA 3RU0A 1SGRI 3QTLD 1SGPI 3MEKA 1AN1I 1TBOA 2LB7A 3TO6A 3TOAA 2B8TA 4HGUA 2WVJA 3UOEA 2DKVA 5CCMA 1DS2I 1YU6C 5FUWA 2YQPA 4JCVE 3VE5A 2NU1I 4A24A 1KBFA 2ARPF 1FARA 5E3QA 2KMOA 1MJAA 1TURA 2ODDA 2QQDA 1WTJA 9WGAA 3GOXA 1DS3I 2GIVA 2JZMA 3R5AA 1M8CA 1SGYI 1CHOI 1MJBA 3UGDA 1P9GA 2DIPA 2N71A 4DNCA 4E1RA 1S20A 5E3PA 4AMLA 1W4RA 1WGCA 2GKTI 1R0RI 1R79A 1TOTA 4L9MA 2J9RA 2L8EA 3QAHA 4FKDA 2SGFI 1PPFI 1U5KA 3TOBA 3FC3A 1XBTA 1TBRR 1HEVA 2OD1A 3OXFA 2WGCA 1LR8A 2RIJA 5FUYA 2ORVA 3B4VC 1NXUA 2KCXA 2N17A 2ERWA 2OZUA 2N1AB 2WCYA 2X52A 5E3RA 5FUVA 4WP4A 2SGEI 1XX6A 2K9HA 1W3SA 3OL0A 3OXLA 1TBQR 2RC4A 1UVFA 1H0ZA 2JA1A 5CCLA 1UVGA 3UGLA 3R5BA 1N13A 5DAEA 1CT0I 1Q9BA 2GKRI 2NU4I 1HJAI 1ULMA 2ROWA 1OVOA 2L7XA 1TUSA 2QQEA 2UZ3A 3D00A 1SGNI 1XA6A
chains in the Genus database with same CATH topology
2QQCA 1Z7KB 1SGQI 3CXLA 1V1IA 3E59A 1PCEA 2ENNA 1KMAA 2LUYA 3VDUA 1OMUA 2V1CC 2KMRA 2E5RA 2NU3I 2NU2I 2SGDI 3PDNA 4OVOA 2N52A 3SGQI 1YTPA 1LR9A 5HQ8A 2QQ0A 5HI7A 4UXJA 1BUSA 1IY6A 1UUCA 5FUXA 2E73A 2JW6A 2XRCA 3E2IA 3SGBI 2NU0I 2P6AC 2YUUA 2OVOA 1CT4I 2QPOA 3OXGA 5EX3A 1IY5A 1FYBA 1Y1CA 3UFFA 4GI3C 1OMTA 1CGJI 2J87A 2SGPI 1TGSI 1M8BA 1OYVI 2ORWA 1LR7A 1SGEI 1V1HA 2ELIA 2GKVA 1CT2I 2JXDA 3BJIA 1VDDA 2GVIA 2M5XA 3QWPA 4UXHA 1BMOA 2F3CI 5JHWC 1CGII 3VDPA 2DB6A 2SGQI 3UEYA 1CE3A 1MT1A 1PTQA 1X4SA 2LEOA 2FNFX 3SEKC 1HPTA 1CSOI 2V53A 1IW4A 1PTRA 1TBNA 2V1CA 2B0UC 3KY9A 4SGBI 2BUSA 1HDLA 4UXIA 4E1PA 1FAQA 1SGDI 3OVOA 2ENZA 3HH2C 2VRWB 1PJUA 2CJSC 1Y8FA 1X74A 1KBEA 2KMQA 2JYYA 2W0TA 3UGIA 4B6DA 1TIHA 1Y1BA 2A20A 3UEJA 5EX0A 3TJQA 1NUBA 2KMPA 1RFHA 3RU0A 1SGRI 3QTLD 1SGPI 3MEKA 1AN1I 1TBOA 2B8TA 4HGUA 2WVJA 5CCMA 1DS2I 1YU6C 5FUWA 2YQPA 4JCVE 3VE5A 2NU1I 4A24A 1KBFA 2ARPF 1FARA 2KMOA 1TURA 2ODDA 2QQDA 3GOXA 1DS3I 2JZMA 1M8CA 1SGYI 1CHOI 3UGDA 2DIPA 2N71A 4E1RA 1W4RA 2GKTI 1R0RI 1R79A 1TOTA 4L9MA 2J9RA 2L8EA 4FKDA 2SGFI 1PPFI 1U5KA 3FC3A 1XBTA 1TBRR 2OD1A 3OXFA 1LR8A 5FUYA 2ORVA 3B4VC 2KCXA 2N17A 2WCYA 2ERWA 5FUVA 2N1AB 2SGEI 1XX6A 2K9HA 1W3SA 3OL0A 3OXLA 1TBQR 1UVFA 1H0ZA 2JA1A 5CCLA 1UVGA 3UGLA 1N13A 5DAEA 1CT0I 2GKRI 2NU4I 1HJAI 2ROWA 1OVOA 2L7XA 1TUSA 2QQEA 2UZ3A 3D00A 1SGNI 1XA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1R A;  4E1P A; 
#chains in the Genus database with same CATH topology
 2QQC A;  1Z7K B;  1SGQ I;  3CXL A;  1V1I A;  3E59 A;  1PCE A;  2ENN A;  1KMA A;  2LUY A;  3VDU A;  1OMU A;  2V1C C;  2KMR A;  2E5R A;  2NU3 I;  2NU2 I;  2SGD I;  3PDN A;  4OVO A;  2N52 A;  1K7V A;  1YTP A;  1LR9 A;  5HQ8 A;  2QQ0 A;  1K7U A;  2CWF A;  5HI7 A;  4UXJ A;  1BUS A;  1IY6 A;  1UUC A;  5FUX A;  2E73 A;  2JW6 A;  2XRC A;  3E2I A;  1UHA A;  3SGB I;  2NU0 I;  2P6A C;  3FSY A;  2YUU A;  2OVO A;  1CT4 I;  2QPO A;  3OXG A;  5EX3 A;  1IY5 A;  1FYB A;  1Y1C A;  3UFF A;  4GI3 C;  1OMT A;  3TO7 A;  1CGJ I;  2J87 A;  2SGP I;  1TGS I;  2Y0M A;  1MJ9 A;  1M8B A;  1FY7 A;  1OYV I;  1K7T A;  2ORW A;  3FSX A;  1WKX A;  1LR7 A;  1SGE I;  1V1H A;  1ULK A;  2ELI A;  1CT2 I;  2GKV A;  2JXD A;  3R5D A;  3BJI A;  1VDD A;  2GVI A;  2M5X A;  3QWP A;  4UXH A;  1ULN A;  1BMO A;  2F3C I;  2CWH A;  5JHW C;  1CGI I;  3VDP A;  2DB6 A;  2SGQ I;  3UEY A;  1CE3 A;  1MT1 A;  7WGA A;  1PTQ A;  1X4S A;  2CWG A;  3SGQ I;  2LEO A;  2FNF X;  3SEK C;  1HPT A;  1CSO I;  2V53 A;  5J8F A;  1IW4 A;  1PTR A;  1TBN A;  2V1C A;  2B0U C;  3KY9 A;  4SGB I;  2BUS A;  1HDL A;  4UXI A;  2OU2 A;  2PQ8 A;  3TO9 A;  1SGD I;  3OVO A;  4E1P A;  1FAQ A;  2ENZ A;  3HH2 C;  2X3T A;  5J8C A;  2VRW B;  1PJU A;  1KBE A;  1Y8F A;  1X74 A;  2CJS C;  2KMQ A;  2JYY A;  2UVO A;  2W0T A;  1Z2I A;  3R5C A;  1WGT A;  3UGI A;  4B6D A;  1P9Z A;  1TIH A;  1Y1B A;  2A20 A;  3UEJ A;  4MPI A;  5EX0 A;  3TJQ A;  1NUB A;  2KMP A;  1RFH A;  3RU0 A;  1SGR I;  3QTL D;  1SGP I;  3MEK A;  1AN1 I;  1TBO A;  2LB7 A;  3TO6 A;  3TOA A;  2B8T A;  4HGU A;  2WVJ A;  3UOE A;  2DKV A;  5CCM A;  1DS2 I;  1YU6 C;  5FUW A;  2YQP A;  4JCV E;  3VE5 A;  2NU1 I;  4A24 A;  1KBF A;  2ARP F;  1FAR A;  5E3Q A;  2KMO A;  1MJA A;  1TUR A;  2ODD A;  2QQD A;  1WTJ A;  9WGA A;  3GOX A;  1DS3 I;  2GIV A;  2JZM A;  3R5A A;  1M8C A;  1SGY I;  1CHO I;  1MJB A;  3UGD A;  1P9G A;  2DIP A;  2N71 A;  4DNC A;  4E1R A;  1S20 A;  5E3P A;  4AML A;  1W4R A;  1WGC A;  2GKT I;  1R0R I;  1R79 A;  1TOT A;  4L9M A;  2J9R A;  2L8E A;  3QAH A;  4FKD A;  2SGF I;  1PPF I;  1U5K A;  3TOB A;  3FC3 A;  1XBT A;  1TBR R;  1HEV A;  2OD1 A;  3OXF A;  2WGC A;  1LR8 A;  2RIJ A;  5FUY A;  2ORV A;  3B4V C;  1NXU A;  2KCX A;  2N17 A;  2ERW A;  2OZU A;  2N1A B;  2WCY A;  2X52 A;  5E3R A;  5FUV A;  4WP4 A;  2SGE I;  1XX6 A;  2K9H A;  1W3S A;  3OL0 A;  3OXL A;  1TBQ R;  2RC4 A;  1UVF A;  1H0Z A;  2JA1 A;  5CCL A;  1UVG A;  3UGL A;  3R5B A;  1N13 A;  5DAE A;  1CT0 I;  1Q9B A;  2GKR I;  2NU4 I;  1HJA I;  1ULM A;  2ROW A;  1OVO A;  2L7X A;  1TUS A;  2QQE A;  2UZ3 A;  3D00 A;  1SGN I;  1XA6 A; 
#chains in the Genus database with same CATH homology
 2QQC A;  1Z7K B;  1SGQ I;  3CXL A;  1V1I A;  3E59 A;  1PCE A;  2ENN A;  1KMA A;  2LUY A;  3VDU A;  1OMU A;  2V1C C;  2KMR A;  2E5R A;  2NU3 I;  2NU2 I;  2SGD I;  3PDN A;  4OVO A;  2N52 A;  3SGQ I;  1YTP A;  1LR9 A;  5HQ8 A;  2QQ0 A;  5HI7 A;  4UXJ A;  1BUS A;  1IY6 A;  1UUC A;  5FUX A;  2E73 A;  2JW6 A;  2XRC A;  3E2I A;  3SGB I;  2NU0 I;  2P6A C;  2YUU A;  2OVO A;  1CT4 I;  2QPO A;  3OXG A;  5EX3 A;  1IY5 A;  1FYB A;  1Y1C A;  3UFF A;  4GI3 C;  1OMT A;  1CGJ I;  2J87 A;  2SGP I;  1TGS I;  1M8B A;  1OYV I;  2ORW A;  1LR7 A;  1SGE I;  1V1H A;  2ELI A;  2GKV A;  1CT2 I;  2JXD A;  3BJI A;  1VDD A;  2GVI A;  2M5X A;  3QWP A;  4UXH A;  1BMO A;  2F3C I;  5JHW C;  1CGI I;  3VDP A;  2DB6 A;  2SGQ I;  3UEY A;  1CE3 A;  1MT1 A;  1PTQ A;  1X4S A;  2LEO A;  2FNF X;  3SEK C;  1HPT A;  1CSO I;  2V53 A;  1IW4 A;  1PTR A;  1TBN A;  2V1C A;  2B0U C;  3KY9 A;  4SGB I;  2BUS A;  1HDL A;  4UXI A;  4E1P A;  1FAQ A;  1SGD I;  3OVO A;  2ENZ A;  3HH2 C;  2VRW B;  1PJU A;  2CJS C;  1Y8F A;  1X74 A;  1KBE A;  2KMQ A;  2JYY A;  2W0T A;  3UGI A;  4B6D A;  1TIH A;  1Y1B A;  2A20 A;  3UEJ A;  5EX0 A;  3TJQ A;  1NUB A;  2KMP A;  1RFH A;  3RU0 A;  1SGR I;  3QTL D;  1SGP I;  3MEK A;  1AN1 I;  1TBO A;  2B8T A;  4HGU A;  2WVJ A;  5CCM A;  1DS2 I;  1YU6 C;  5FUW A;  2YQP A;  4JCV E;  3VE5 A;  2NU1 I;  4A24 A;  1KBF A;  2ARP F;  1FAR A;  2KMO A;  1TUR A;  2ODD A;  2QQD A;  3GOX A;  1DS3 I;  2JZM A;  1M8C A;  1SGY I;  1CHO I;  3UGD A;  2DIP A;  2N71 A;  4E1R A;  1W4R A;  2GKT I;  1R0R I;  1R79 A;  1TOT A;  4L9M A;  2J9R A;  2L8E A;  4FKD A;  2SGF I;  1PPF I;  1U5K A;  3FC3 A;  1XBT A;  1TBR R;  2OD1 A;  3OXF A;  1LR8 A;  5FUY A;  2ORV A;  3B4V C;  2KCX A;  2N17 A;  2WCY A;  2ERW A;  5FUV A;  2N1A B;  2SGE I;  1XX6 A;  2K9H A;  1W3S A;  3OL0 A;  3OXL A;  1TBQ R;  1UVF A;  1H0Z A;  2JA1 A;  5CCL A;  1UVG A;  3UGL A;  1N13 A;  5DAE A;  1CT0 I;  2GKR I;  2NU4 I;  1HJA I;  2ROW A;  1OVO A;  2L7X A;  1TUS A;  2QQE A;  2UZ3 A;  3D00 A;  1SGN I;  1XA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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