2N1AB

Docked structure between sumo1 and zz-domain from cbp
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
53
structure length
53
Chain Sequence
GQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHAHKMVKWGLGLDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Analysis of a Complex between Small Ubiquitin-like Modifier 1 (SUMO1) and the ZZ Domain of CREB-binding Protein (CBP/p300) Reveals a New Interaction Surface on SUMO.
pubmed doi rcsb
molecule tags Transcription
source organism Homo sapiens
molecule keywords Small ubiquitin-related modifier 1
total genus 5
structure length 53
sequence length 53
ec nomenclature ec 2.3.1.48: Histone acetyltransferase.
pdb deposition date 2015-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00569 ZZ Zinc finger, ZZ type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.90 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2n1aB00
1TOTA 2N1AB 2E5RA 2DIPA
chains in the Genus database with same CATH superfamily
1NXUA 2L8EA 2ERWA 2V1CA 1OMTA 3TO7A 1FYBA 1CGII 1DS3I 2NU0I 3QTLD 1PPFI 1K7TA 3UFFA 1MJBA 1V1HA 2CWHA 5CCLA 1CT0I 1ULMA 5CCMA 2ORVA 2OVOA 5DAEA 5EX0A 2PQ8A 3UGIA 3OXLA 1AN1I 2SGPI 1M8CA 3R5CA 1TBNA 2YQPA 3UGDA 2KMQA 5HQ8A 4OVOA 1H0ZA 2ROWA 2ENZA 1FARA 1Z7KB 3VDPA 1TBOA 1CSOI 1Y1BA 2DB6A 3E2IA 2K9HA 2CJSC 2J9RA 3QWPA 3KY9A 2KMOA 2SGDI 1HEVA 2QQEA 2NU3I 1HPTA 1P9ZA 2B0UC 1R0RI 3TOAA 2VRWB 3UEJA 2W0TA 3CXLA 4DNCA 2DIPA 1OYVI 2N1AB 2GKTI 1SGQI 5HI7A 2JW6A 2NU1I 3SEKC 2OZUA 1BUSA 2JZMA 2WCYA 1V1IA 2GIVA 2GKVA 1RFHA 2J87A 2X52A 3TJQA 4UXIA 1TGSI 1DS2I 1Z2IA 1ULKA 1IW4A 1SGEI 2NU4I 2N17A 2UVOA 1MJAA 4FKDA 3TO9A 1Q9BA 3GOXA 1CHOI 3SGQI 1PTQA 4GI3C 4WP4A 4E1PA 2DKVA 1FAQA 2JXDA 2FNFX 2JYYA 2LUYA 3R5BA 9WGAA 2GVIA 2WGCA 1TOTA 1MJ9A 1YTPA 1SGRI 1LR9A 5FUYA 3BJIA 1SGPI 3OXFA 2QQ0A 2OU2A 1WGCA 1X4SA 3UGLA 4B6DA 1M8BA 3E59A 3R5AA 1SGYI 1KBEA 1YU6C 2X3TA 1S20A 1UUCA 1LR8A 2ELIA 1BMOA 2GKRI 3UEYA 3TOBA 5JHWC 2LB7A 1P9GA 1XX6A 3HH2C 3RU0A 3VE5A 2SGEI 1PCEA 1U5KA 1R79A 4SGBI 5J8FA 3SGBI 2E73A 2NU2I 4L9MA 4E1RA 1PTRA 1TIHA 1UVFA 1CE3A 4HGUA 1WGTA 3QAHA 3VDUA 2JA1A 2A20A 2P6AC 2QPOA 4MPIA 2ENNA 2YUUA 2CWFA 1VDDA 1PJUA 5FUVA 2B8TA 1LR7A 3B4VC 3FSYA 2QQCA 1TBRR 1FY7A 1XBTA 1K7VA 2KMRA 3D00A 4AMLA 2Y0MA 5E3QA 1UVGA 2N52A 5EX3A 2ODDA 1MT1A 2L7XA 1XA6A 1WKXA 2SGQI 2KMPA 5E3RA 2BUSA 3FSXA 1W4RA 2LEOA 2ARPF 3MEKA 3OL0A 1TURA 1N13A 2UZ3A 3PDNA 1Y1CA 2QQDA 7WGAA 5J8CA 1IY6A 1OVOA 1TUSA 2KCXA 4UXHA 3TO6A 2SGFI 2ORWA 1CT4I 2M5XA 1IY5A 1HDLA 1SGNI 2XRCA 1KBFA 4JCVE 1K7UA 4A24A 1CT2I 2E5RA 1Y8FA 2RIJA 2CWGA 5FUWA 1WTJA 1CGJI 2RC4A 1W3SA 1HJAI 1UHAA 2V53A 3FC3A 4UXJA 2OD1A 1X74A 3R5DA 3UOEA 2N71A 5FUXA 1ULNA 2V1CC 1KMAA 3OVOA 3OXGA 1NUBA 5E3PA 2F3CI 2WVJA 1OMUA 1TBQR 1SGDI
chains in the Genus database with same CATH topology
2L8EA 2ERWA 2V1CA 1OMTA 1FYBA 1CGII 1DS3I 2NU0I 3QTLD 1PPFI 3UFFA 5CCLA 1V1HA 1CT0I 5CCMA 2ORVA 2OVOA 5DAEA 5EX0A 3UGIA 3OXLA 1AN1I 2SGPI 1M8CA 3UGDA 1TBNA 2YQPA 2KMQA 5HQ8A 4OVOA 1H0ZA 2ROWA 2ENZA 1FARA 1Z7KB 3VDPA 1TBOA 1CSOI 1Y1BA 2DB6A 3E2IA 2K9HA 2CJSC 2J9RA 3QWPA 3KY9A 2KMOA 2SGDI 2QQEA 2NU3I 1HPTA 2B0UC 1R0RI 2VRWB 3UEJA 2W0TA 3CXLA 2DIPA 1OYVI 2N1AB 2GKTI 1SGQI 5HI7A 2JW6A 2NU1I 3SEKC 1BUSA 2JZMA 2WCYA 1V1IA 2GKVA 1RFHA 2J87A 3TJQA 4UXIA 1TGSI 1DS2I 1IW4A 1SGEI 2NU4I 2N17A 4FKDA 3GOXA 1CHOI 3SGQI 1PTQA 4GI3C 4E1PA 1FAQA 2JXDA 2FNFX 2JYYA 2LUYA 2GVIA 1TOTA 1YTPA 1SGRI 1LR9A 5FUYA 3BJIA 1SGPI 3OXFA 2QQ0A 3UGLA 1X4SA 4B6DA 1M8BA 3E59A 1SGYI 1KBEA 1YU6C 1UUCA 1LR8A 2ELIA 1BMOA 2GKRI 3UEYA 5JHWC 1XX6A 3HH2C 3RU0A 3VE5A 2SGEI 1PCEA 1U5KA 1R79A 4SGBI 3SGBI 2E73A 2NU2I 4L9MA 4E1RA 1PTRA 1TIHA 1UVFA 1CE3A 4HGUA 3VDUA 2JA1A 2A20A 2P6AC 2QPOA 2ENNA 2YUUA 1VDDA 1PJUA 5FUVA 2B8TA 1LR7A 3B4VC 2QQCA 1TBRR 1XBTA 2KMRA 3D00A 1UVGA 2N52A 5EX3A 2ODDA 1MT1A 2L7XA 1XA6A 2SGQI 2KMPA 2BUSA 3MEKA 1W4RA 2LEOA 2ARPF 3OL0A 1TURA 1N13A 2UZ3A 3PDNA 1Y1CA 2QQDA 1IY6A 1OVOA 1TUSA 2KCXA 4UXHA 2SGFI 2ORWA 1CT4I 2M5XA 1IY5A 1HDLA 1SGNI 2XRCA 1KBFA 4JCVE 4A24A 1CT2I 2E5RA 1Y8FA 5FUWA 1CGJI 2V53A 1W3SA 1HJAI 3FC3A 4UXJA 2OD1A 1X74A 2N71A 5FUXA 1KMAA 2V1CC 3OVOA 3OXGA 1NUBA 2F3CI 2WVJA 1OMUA 1TBQR 1SGDI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TOT A;  2N1A B;  2E5R A;  2DIP A; 
#chains in the Genus database with same CATH topology
 1NXU A;  2L8E A;  2ERW A;  2V1C A;  1OMT A;  3TO7 A;  1FYB A;  1CGI I;  1DS3 I;  2NU0 I;  3QTL D;  1PPF I;  1K7T A;  3UFF A;  1MJB A;  1V1H A;  2CWH A;  5CCL A;  1CT0 I;  1ULM A;  5CCM A;  2ORV A;  2OVO A;  5DAE A;  5EX0 A;  2PQ8 A;  3UGI A;  3OXL A;  1AN1 I;  2SGP I;  1M8C A;  3R5C A;  1TBN A;  2YQP A;  3UGD A;  2KMQ A;  5HQ8 A;  4OVO A;  1H0Z A;  2ROW A;  2ENZ A;  1FAR A;  1Z7K B;  3VDP A;  1TBO A;  1CSO I;  1Y1B A;  2DB6 A;  3E2I A;  2K9H A;  2CJS C;  2J9R A;  3QWP A;  3KY9 A;  2KMO A;  2SGD I;  1HEV A;  2QQE A;  2NU3 I;  1HPT A;  1P9Z A;  2B0U C;  1R0R I;  3TOA A;  2VRW B;  3UEJ A;  2W0T A;  3CXL A;  4DNC A;  2DIP A;  1OYV I;  2N1A B;  2GKT I;  1SGQ I;  5HI7 A;  2JW6 A;  2NU1 I;  3SEK C;  2OZU A;  1BUS A;  2JZM A;  2WCY A;  1V1I A;  2GIV A;  2GKV A;  1RFH A;  2J87 A;  2X52 A;  3TJQ A;  4UXI A;  1TGS I;  1DS2 I;  1Z2I A;  1ULK A;  1IW4 A;  1SGE I;  2NU4 I;  2N17 A;  2UVO A;  1MJA A;  4FKD A;  3TO9 A;  1Q9B A;  3GOX A;  1CHO I;  3SGQ I;  1PTQ A;  4GI3 C;  4WP4 A;  4E1P A;  2DKV A;  1FAQ A;  2JXD A;  2FNF X;  2JYY A;  2LUY A;  3R5B A;  9WGA A;  2GVI A;  2WGC A;  1TOT A;  1MJ9 A;  1YTP A;  1SGR I;  1LR9 A;  5FUY A;  3BJI A;  1SGP I;  3OXF A;  2QQ0 A;  2OU2 A;  1WGC A;  1X4S A;  3UGL A;  4B6D A;  1M8B A;  3E59 A;  3R5A A;  1SGY I;  1KBE A;  1YU6 C;  2X3T A;  1S20 A;  1UUC A;  1LR8 A;  2ELI A;  1BMO A;  2GKR I;  3UEY A;  3TOB A;  5JHW C;  2LB7 A;  1P9G A;  1XX6 A;  3HH2 C;  3RU0 A;  3VE5 A;  2SGE I;  1PCE A;  1U5K A;  1R79 A;  4SGB I;  5J8F A;  3SGB I;  2E73 A;  2NU2 I;  4L9M A;  4E1R A;  1PTR A;  1TIH A;  1UVF A;  1CE3 A;  4HGU A;  1WGT A;  3QAH A;  3VDU A;  2JA1 A;  2A20 A;  2P6A C;  2QPO A;  4MPI A;  2ENN A;  2YUU A;  2CWF A;  1VDD A;  1PJU A;  5FUV A;  2B8T A;  1LR7 A;  3B4V C;  3FSY A;  2QQC A;  1TBR R;  1FY7 A;  1XBT A;  1K7V A;  2KMR A;  3D00 A;  4AML A;  2Y0M A;  5E3Q A;  1UVG A;  2N52 A;  5EX3 A;  2ODD A;  1MT1 A;  2L7X A;  1XA6 A;  1WKX A;  2SGQ I;  2KMP A;  5E3R A;  2BUS A;  3FSX A;  1W4R A;  2LEO A;  2ARP F;  3MEK A;  3OL0 A;  1TUR A;  1N13 A;  2UZ3 A;  3PDN A;  1Y1C A;  2QQD A;  7WGA A;  5J8C A;  1IY6 A;  1OVO A;  1TUS A;  2KCX A;  4UXH A;  3TO6 A;  2SGF I;  2ORW A;  1CT4 I;  2M5X A;  1IY5 A;  1HDL A;  1SGN I;  2XRC A;  1KBF A;  4JCV E;  1K7U A;  4A24 A;  1CT2 I;  2E5R A;  1Y8F A;  2RIJ A;  2CWG A;  5FUW A;  1WTJ A;  1CGJ I;  2RC4 A;  1W3S A;  1HJA I;  1UHA A;  2V53 A;  3FC3 A;  4UXJ A;  2OD1 A;  1X74 A;  3R5D A;  3UOE A;  2N71 A;  5FUX A;  1ULN A;  2V1C C;  1KMA A;  3OVO A;  3OXG A;  1NUB A;  5E3P A;  2F3C I;  2WVJ A;  1OMU A;  1TBQ R;  1SGD I; 
#chains in the Genus database with same CATH homology
 2L8E A;  2ERW A;  2V1C A;  1OMT A;  1FYB A;  1CGI I;  1DS3 I;  2NU0 I;  3QTL D;  1PPF I;  3UFF A;  5CCL A;  1V1H A;  1CT0 I;  5CCM A;  2ORV A;  2OVO A;  5DAE A;  5EX0 A;  3UGI A;  3OXL A;  1AN1 I;  2SGP I;  1M8C A;  3UGD A;  1TBN A;  2YQP A;  2KMQ A;  5HQ8 A;  4OVO A;  1H0Z A;  2ROW A;  2ENZ A;  1FAR A;  1Z7K B;  3VDP A;  1TBO A;  1CSO I;  1Y1B A;  2DB6 A;  3E2I A;  2K9H A;  2CJS C;  2J9R A;  3QWP A;  3KY9 A;  2KMO A;  2SGD I;  2QQE A;  2NU3 I;  1HPT A;  2B0U C;  1R0R I;  2VRW B;  3UEJ A;  2W0T A;  3CXL A;  2DIP A;  1OYV I;  2N1A B;  2GKT I;  1SGQ I;  5HI7 A;  2JW6 A;  2NU1 I;  3SEK C;  1BUS A;  2JZM A;  2WCY A;  1V1I A;  2GKV A;  1RFH A;  2J87 A;  3TJQ A;  4UXI A;  1TGS I;  1DS2 I;  1IW4 A;  1SGE I;  2NU4 I;  2N17 A;  4FKD A;  3GOX A;  1CHO I;  3SGQ I;  1PTQ A;  4GI3 C;  4E1P A;  1FAQ A;  2JXD A;  2FNF X;  2JYY A;  2LUY A;  2GVI A;  1TOT A;  1YTP A;  1SGR I;  1LR9 A;  5FUY A;  3BJI A;  1SGP I;  3OXF A;  2QQ0 A;  3UGL A;  1X4S A;  4B6D A;  1M8B A;  3E59 A;  1SGY I;  1KBE A;  1YU6 C;  1UUC A;  1LR8 A;  2ELI A;  1BMO A;  2GKR I;  3UEY A;  5JHW C;  1XX6 A;  3HH2 C;  3RU0 A;  3VE5 A;  2SGE I;  1PCE A;  1U5K A;  1R79 A;  4SGB I;  3SGB I;  2E73 A;  2NU2 I;  4L9M A;  4E1R A;  1PTR A;  1TIH A;  1UVF A;  1CE3 A;  4HGU A;  3VDU A;  2JA1 A;  2A20 A;  2P6A C;  2QPO A;  2ENN A;  2YUU A;  1VDD A;  1PJU A;  5FUV A;  2B8T A;  1LR7 A;  3B4V C;  2QQC A;  1TBR R;  1XBT A;  2KMR A;  3D00 A;  1UVG A;  2N52 A;  5EX3 A;  2ODD A;  1MT1 A;  2L7X A;  1XA6 A;  2SGQ I;  2KMP A;  2BUS A;  3MEK A;  1W4R A;  2LEO A;  2ARP F;  3OL0 A;  1TUR A;  1N13 A;  2UZ3 A;  3PDN A;  1Y1C A;  2QQD A;  1IY6 A;  1OVO A;  1TUS A;  2KCX A;  4UXH A;  2SGF I;  2ORW A;  1CT4 I;  2M5X A;  1IY5 A;  1HDL A;  1SGN I;  2XRC A;  1KBF A;  4JCV E;  4A24 A;  1CT2 I;  2E5R A;  1Y8F A;  5FUW A;  1CGJ I;  2V53 A;  1W3S A;  1HJA I;  3FC3 A;  4UXJ A;  2OD1 A;  1X74 A;  2N71 A;  5FUX A;  1KMA A;  2V1C C;  3OVO A;  3OXG A;  1NUB A;  2F3C I;  2WVJ A;  1OMU A;  1TBQ R;  1SGD I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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