2L8EA

Solution nmr structure of fcs domain of human polyhomeotic homolog 1 (hph1)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
49
structure length
49
Chain Sequence
GTRGVDSPSAELDKKANLLKCEYCGKYAPAEQFRGSKRFCSMTCAKRYN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
source organism Homo sapiens
publication title 1H, 15N and 13C assigned chemical shifts of FCS domain from human polyhomeotic homolog 1
rcsb
molecule keywords Polyhomeotic-like protein 1
total genus 9
structure length 49
sequence length 49
ec nomenclature
pdb deposition date 2011-01-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.160 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2l8eA00
2L8EA 2W0TA
chains in the Genus database with same CATH superfamily
2KMRA 1WGTA 1XX6A 1MJ9A 1ULKA 2Y0MA 3TO7A 3VDUA 1IW4A 4WP4A 4E1PA 2FNFX 5HI7A 1OVOA 1BUSA 3D00A 1SGEI 2NU2I 5DAEA 2KCXA 4DNCA 2K9HA 3R5AA 1YU6C 2ENZA 2UVOA 3RU0A 1DS3I 2N52A 1LR9A 5EX3A 1FY7A 2GKRI 3OVOA 4FKDA 1HDLA 2QPOA 1TUSA 2CWGA 1AN1I 1N13A 1YTPA 2GKTI 2VRWB 2W0TA 5HQ8A 3UGLA 1CGJI 3R5CA 1V1HA 3QWPA 3GOXA 1XA6A 4SGBI 3VDPA 2OVOA 2JA1A 4L9MA 3QAHA 2BUSA 5J8FA 3OL0A 5J8CA 1K7TA 2JZMA 4UXHA 2QQCA 2YQPA 1OMTA 1TBRR 1Q9BA 1SGRI 5E3QA 1UHAA 1TBQR 1WTJA 2DKVA 1TBNA 1IY5A 5FUYA 2GKVA 2KMPA 1X4SA 2QQDA 2NU4I 2V1CA 2OD1A 1DS2I 3R5BA 1CT2I 1VDDA 2LEOA 2YUUA 1SGNI 1PTQA 3CXLA 1NUBA 1UVFA 1Y1BA 2XRCA 3FSYA 1SGYI 1M8CA 2F3CI 5FUWA 2SGQI 2L8EA 3BJIA 4OVOA 4A24A 1NXUA 1TURA 2V1CC 3E2IA 3KY9A 1BMOA 2NU1I 2QQ0A 2V53A 3R5DA 2J9RA 3HH2C 2SGEI 3SEKC 1PPFI 1Y1CA 2KMQA 4GI3C 1CT0I 2ARPF 2A20A 2GIVA 2M5XA 2LUYA 5JHWC 2WGCA 3B4VC 2ELIA 4HGUA 3TOAA 3UFFA 4AMLA 1CSOI 1CHOI 7WGAA 1PJUA 2KMOA 1RFHA 5E3RA 1FAQA 2RIJA 1TBOA 2SGFI 2ORWA 4MPIA 2CJSC 3TOBA 2JW6A 1ULMA 4E1RA 1PTRA 3UOEA 2N1AB 2SGPI 2E73A 1Z2IA 2P6AC 3SGBI 2GVIA 2ERWA 2J87A 9WGAA 3UGDA 2ODDA 2PQ8A 1K7VA 2ORVA 2X52A 3E59A 1LR8A 1PCEA 2CWFA 2B8TA 2WVJA 2QQEA 1TIHA 2OZUA 1MJBA 1XBTA 2DB6A 1M8BA 2ENNA 5FUXA 3SGQI 3VE5A 1HEVA 4B6DA 1OYVI 4UXJA 1CT4I 1V1IA 3TO6A 2RC4A 2JYYA 2NU3I 4UXIA 1P9ZA 1CE3A 1OMUA 1UUCA 5CCLA 1R79A 1P9GA 1W3SA 3OXFA 2ROWA 2CWHA 1H0ZA 3UGIA 2L7XA 1UVGA 2DIPA 5CCMA 3UEYA 5FUVA 1IY6A 1TOTA 5E3PA 1WKXA 2SGDI 1KBFA 1LR7A 1KBEA 2WCYA 2X3TA 1ULNA 3OXGA 1SGDI 3OXLA 1K7UA 1Z7KB 1MJAA 3PDNA 3TJQA 1R0RI 3UEJA 3QTLD 1S20A 1KMAA 2NU0I 2N17A 2E5RA 5EX0A 3FC3A 1FYBA 3FSXA 1HJAI 4JCVE 2UZ3A 1WGCA 3MEKA 1SGPI 1HPTA 1SGQI 1TGSI 1U5KA 1W4RA 1X74A 2B0UC 2LB7A 2N71A 2OU2A 1FARA 1MT1A 2JXDA 1CGII 1Y8FA 3TO9A
chains in the Genus database with same CATH topology
2KMRA 1XX6A 3VDUA 1IW4A 4E1PA 2FNFX 5HI7A 1OVOA 1BUSA 3D00A 1SGEI 2NU2I 5DAEA 2KCXA 2K9HA 1YU6C 2ENZA 3RU0A 1DS3I 2N52A 1LR9A 5EX3A 2GKRI 3OVOA 4FKDA 1HDLA 2QPOA 1TUSA 1AN1I 1N13A 1YTPA 2GKTI 2VRWB 2W0TA 5HQ8A 3UGLA 1CGJI 1V1HA 3QWPA 3GOXA 1XA6A 4SGBI 3VDPA 2OVOA 2JA1A 4L9MA 2BUSA 3OL0A 2JZMA 4UXHA 2QQCA 2YQPA 1OMTA 1TBRR 1SGRI 1TBQR 1IY5A 1TBNA 5FUYA 2GKVA 2KMPA 1X4SA 2QQDA 2NU4I 2V1CA 2OD1A 1DS2I 1CT2I 1VDDA 2LEOA 2YUUA 1SGNI 1PTQA 3CXLA 1NUBA 1UVFA 1Y1BA 2XRCA 5FUWA 1SGYI 1M8CA 2F3CI 2SGQI 2L8EA 3BJIA 4OVOA 4A24A 2V1CC 1TURA 3E2IA 3KY9A 1BMOA 2NU1I 2QQ0A 2V53A 2J9RA 3HH2C 2SGEI 3SEKC 1PPFI 1Y1CA 2KMQA 4GI3C 1CT0I 2ARPF 2A20A 2M5XA 2LUYA 5JHWC 3B4VC 2ELIA 4HGUA 3UFFA 1CSOI 1CHOI 1PJUA 2KMOA 1RFHA 1FAQA 1TBOA 2SGFI 2ORWA 2CJSC 2JW6A 4E1RA 1PTRA 2N1AB 2SGPI 2E73A 2P6AC 3SGBI 2GVIA 2ERWA 2J87A 3UGDA 2ODDA 2ORVA 3E59A 1LR8A 1PCEA 2B8TA 2WVJA 2QQEA 1TIHA 3SGQI 1XBTA 2DB6A 1M8BA 2ENNA 5FUXA 3VE5A 4B6DA 1OYVI 4UXJA 1CT4I 1V1IA 2JYYA 2NU3I 4UXIA 1CE3A 1OMUA 1UUCA 5CCLA 1R79A 1W3SA 3OXFA 2ROWA 1H0ZA 3UGIA 2L7XA 1UVGA 2DIPA 5CCMA 3UEYA 5FUVA 1IY6A 1TOTA 2SGDI 1KBFA 1LR7A 1KBEA 2WCYA 3OXGA 1SGDI 3OXLA 1Z7KB 3PDNA 3UEJA 3TJQA 1R0RI 3QTLD 1KMAA 2NU0I 2N17A 2E5RA 5EX0A 3FC3A 1FYBA 1HJAI 4JCVE 2UZ3A 3MEKA 1SGPI 1HPTA 1SGQI 1TGSI 1U5KA 1W4RA 1X74A 2B0UC 2N71A 1FARA 1MT1A 2JXDA 1CGII 1Y8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L8E A;  2W0T A; 
#chains in the Genus database with same CATH topology
 2KMR A;  1WGT A;  1XX6 A;  1MJ9 A;  1ULK A;  2Y0M A;  3TO7 A;  3VDU A;  1IW4 A;  4WP4 A;  4E1P A;  2FNF X;  5HI7 A;  1OVO A;  1BUS A;  3D00 A;  1SGE I;  2NU2 I;  5DAE A;  2KCX A;  4DNC A;  2K9H A;  3R5A A;  1YU6 C;  2ENZ A;  2UVO A;  3RU0 A;  1DS3 I;  2N52 A;  1LR9 A;  5EX3 A;  1FY7 A;  2GKR I;  3OVO A;  4FKD A;  1HDL A;  2QPO A;  1TUS A;  2CWG A;  1AN1 I;  1N13 A;  1YTP A;  2GKT I;  2VRW B;  2W0T A;  5HQ8 A;  3UGL A;  1CGJ I;  3R5C A;  1V1H A;  3QWP A;  3GOX A;  1XA6 A;  4SGB I;  3VDP A;  2OVO A;  2JA1 A;  4L9M A;  3QAH A;  2BUS A;  5J8F A;  3OL0 A;  5J8C A;  1K7T A;  2JZM A;  4UXH A;  2QQC A;  2YQP A;  1OMT A;  1TBR R;  1Q9B A;  1SGR I;  5E3Q A;  1UHA A;  1TBQ R;  1WTJ A;  2DKV A;  1TBN A;  1IY5 A;  5FUY A;  2GKV A;  2KMP A;  1X4S A;  2QQD A;  2NU4 I;  2V1C A;  2OD1 A;  1DS2 I;  3R5B A;  1CT2 I;  1VDD A;  2LEO A;  2YUU A;  1SGN I;  1PTQ A;  3CXL A;  1NUB A;  1UVF A;  1Y1B A;  2XRC A;  3FSY A;  1SGY I;  1M8C A;  2F3C I;  5FUW A;  2SGQ I;  2L8E A;  3BJI A;  4OVO A;  4A24 A;  1NXU A;  1TUR A;  2V1C C;  3E2I A;  3KY9 A;  1BMO A;  2NU1 I;  2QQ0 A;  2V53 A;  3R5D A;  2J9R A;  3HH2 C;  2SGE I;  3SEK C;  1PPF I;  1Y1C A;  2KMQ A;  4GI3 C;  1CT0 I;  2ARP F;  2A20 A;  2GIV A;  2M5X A;  2LUY A;  5JHW C;  2WGC A;  3B4V C;  2ELI A;  4HGU A;  3TOA A;  3UFF A;  4AML A;  1CSO I;  1CHO I;  7WGA A;  1PJU A;  2KMO A;  1RFH A;  5E3R A;  1FAQ A;  2RIJ A;  1TBO A;  2SGF I;  2ORW A;  4MPI A;  2CJS C;  3TOB A;  2JW6 A;  1ULM A;  4E1R A;  1PTR A;  3UOE A;  2N1A B;  2SGP I;  2E73 A;  1Z2I A;  2P6A C;  3SGB I;  2GVI A;  2ERW A;  2J87 A;  9WGA A;  3UGD A;  2ODD A;  2PQ8 A;  1K7V A;  2ORV A;  2X52 A;  3E59 A;  1LR8 A;  1PCE A;  2CWF A;  2B8T A;  2WVJ A;  2QQE A;  1TIH A;  2OZU A;  1MJB A;  1XBT A;  2DB6 A;  1M8B A;  2ENN A;  5FUX A;  3SGQ I;  3VE5 A;  1HEV A;  4B6D A;  1OYV I;  4UXJ A;  1CT4 I;  1V1I A;  3TO6 A;  2RC4 A;  2JYY A;  2NU3 I;  4UXI A;  1P9Z A;  1CE3 A;  1OMU A;  1UUC A;  5CCL A;  1R79 A;  1P9G A;  1W3S A;  3OXF A;  2ROW A;  2CWH A;  1H0Z A;  3UGI A;  2L7X A;  1UVG A;  2DIP A;  5CCM A;  3UEY A;  5FUV A;  1IY6 A;  1TOT A;  5E3P A;  1WKX A;  2SGD I;  1KBF A;  1LR7 A;  1KBE A;  2WCY A;  2X3T A;  1ULN A;  3OXG A;  1SGD I;  3OXL A;  1K7U A;  1Z7K B;  1MJA A;  3PDN A;  3TJQ A;  1R0R I;  3UEJ A;  3QTL D;  1S20 A;  1KMA A;  2NU0 I;  2N17 A;  2E5R A;  5EX0 A;  3FC3 A;  1FYB A;  3FSX A;  1HJA I;  4JCV E;  2UZ3 A;  1WGC A;  3MEK A;  1SGP I;  1HPT A;  1SGQ I;  1TGS I;  1U5K A;  1W4R A;  1X74 A;  2B0U C;  2LB7 A;  2N71 A;  2OU2 A;  1FAR A;  1MT1 A;  2JXD A;  1CGI I;  1Y8F A;  3TO9 A; 
#chains in the Genus database with same CATH homology
 2KMR A;  1XX6 A;  3VDU A;  1IW4 A;  4E1P A;  2FNF X;  5HI7 A;  1OVO A;  1BUS A;  3D00 A;  1SGE I;  2NU2 I;  5DAE A;  2KCX A;  2K9H A;  1YU6 C;  2ENZ A;  3RU0 A;  1DS3 I;  2N52 A;  1LR9 A;  5EX3 A;  2GKR I;  3OVO A;  4FKD A;  1HDL A;  2QPO A;  1TUS A;  1AN1 I;  1N13 A;  1YTP A;  2GKT I;  2VRW B;  2W0T A;  5HQ8 A;  3UGL A;  1CGJ I;  1V1H A;  3QWP A;  3GOX A;  1XA6 A;  4SGB I;  3VDP A;  2OVO A;  2JA1 A;  4L9M A;  2BUS A;  3OL0 A;  2JZM A;  4UXH A;  2QQC A;  2YQP A;  1OMT A;  1TBR R;  1SGR I;  1TBQ R;  1IY5 A;  1TBN A;  5FUY A;  2GKV A;  2KMP A;  1X4S A;  2QQD A;  2NU4 I;  2V1C A;  2OD1 A;  1DS2 I;  1CT2 I;  1VDD A;  2LEO A;  2YUU A;  1SGN I;  1PTQ A;  3CXL A;  1NUB A;  1UVF A;  1Y1B A;  2XRC A;  5FUW A;  1SGY I;  1M8C A;  2F3C I;  2SGQ I;  2L8E A;  3BJI A;  4OVO A;  4A24 A;  2V1C C;  1TUR A;  3E2I A;  3KY9 A;  1BMO A;  2NU1 I;  2QQ0 A;  2V53 A;  2J9R A;  3HH2 C;  2SGE I;  3SEK C;  1PPF I;  1Y1C A;  2KMQ A;  4GI3 C;  1CT0 I;  2ARP F;  2A20 A;  2M5X A;  2LUY A;  5JHW C;  3B4V C;  2ELI A;  4HGU A;  3UFF A;  1CSO I;  1CHO I;  1PJU A;  2KMO A;  1RFH A;  1FAQ A;  1TBO A;  2SGF I;  2ORW A;  2CJS C;  2JW6 A;  4E1R A;  1PTR A;  2N1A B;  2SGP I;  2E73 A;  2P6A C;  3SGB I;  2GVI A;  2ERW A;  2J87 A;  3UGD A;  2ODD A;  2ORV A;  3E59 A;  1LR8 A;  1PCE A;  2B8T A;  2WVJ A;  2QQE A;  1TIH A;  3SGQ I;  1XBT A;  2DB6 A;  1M8B A;  2ENN A;  5FUX A;  3VE5 A;  4B6D A;  1OYV I;  4UXJ A;  1CT4 I;  1V1I A;  2JYY A;  2NU3 I;  4UXI A;  1CE3 A;  1OMU A;  1UUC A;  5CCL A;  1R79 A;  1W3S A;  3OXF A;  2ROW A;  1H0Z A;  3UGI A;  2L7X A;  1UVG A;  2DIP A;  5CCM A;  3UEY A;  5FUV A;  1IY6 A;  1TOT A;  2SGD I;  1KBF A;  1LR7 A;  1KBE A;  2WCY A;  3OXG A;  1SGD I;  3OXL A;  1Z7K B;  3PDN A;  3UEJ A;  3TJQ A;  1R0R I;  3QTL D;  1KMA A;  2NU0 I;  2N17 A;  2E5R A;  5EX0 A;  3FC3 A;  1FYB A;  1HJA I;  4JCV E;  2UZ3 A;  3MEK A;  1SGP I;  1HPT A;  1SGQ I;  1TGS I;  1U5K A;  1W4R A;  1X74 A;  2B0U C;  2N71 A;  1FAR A;  1MT1 A;  2JXD A;  1CGI I;  1Y8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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