2L8EA

Solution nmr structure of fcs domain of human polyhomeotic homolog 1 (hph1)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
49
structure length
49
Chain Sequence
GTRGVDSPSAELDKKANLLKCEYCGKYAPAEQFRGSKRFCSMTCAKRYN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
molecule keywords Polyhomeotic-like protein 1
publication title 1H, 15N and 13C assigned chemical shifts of FCS domain from human polyhomeotic homolog 1
rcsb
source organism Homo sapiens
total genus 9
structure length 49
sequence length 49
ec nomenclature
pdb deposition date 2011-01-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.160 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2l8eA00
2W0TA 2L8EA
chains in the Genus database with same CATH superfamily
1Z2IA 2NU3I 1H0ZA 2N71A 5HI7A 2JZMA 1K7UA 2ENZA 3BJIA 2ROWA 2QQCA 1OMTA 1PTRA 2A20A 2KMRA 1FAQA 2GIVA 1CE3A 1CT2I 2YUUA 1SGNI 2JW6A 1YU6C 1PCEA 2WCYA 1NUBA 4WP4A 5E3RA 1Y8FA 3SGQI 2L8EA 3R5AA 2UVOA 2JXDA 2E73A 3R5DA 1WKXA 5EX0A 2QQEA 2F3CI 2SGDI 3R5BA 2W0TA 3B4VC 1P9GA 2CWFA 2LEOA 2ELIA 1PPFI 1N13A 1R0RI 3GOXA 2FNFX 1IY5A 2E5RA 2V1CA 2NU1I 3R5CA 3TOBA 2P6AC 3FC3A 1TGSI 2Y0MA 3VDPA 3UGDA 4OVOA 2KCXA 2ENNA 1UVFA 1P9ZA 1DS2I 5EX3A 9WGAA 2PQ8A 3SGBI 2OD1A 1CT4I 2WGCA 2B0UC 1TIHA 1TBRR 1BMOA 3TO7A 3TO6A 3TO9A 2OVOA 2V1CC 1BUSA 2DB6A 1HEVA 1K7VA 1NXUA 1AN1I 1MJBA 1ULMA 1OMUA 3UEJA 1Y1CA 2NU0I 2YQPA 1OVOA 3MEKA 2J87A 2K9HA 2KMQA 2ORVA 4HGUA 2RIJA 1TOTA 4L9MA 2J9RA 2UZ3A 1CGJI 3E59A 5FUWA 3UOEA 2SGQI 3QTLD 2N17A 2QQ0A 2N1AB 3KY9A 2GVIA 5CCLA 1FY7A 1SGDI 2GKTI 3TOAA 1U5KA 1XX6A 3UEYA 2CWHA 3UGLA 4UXJA 3E2IA 4B6DA 2OZUA 5E3QA 4MPIA 2B8TA 1HJAI 1HPTA 1MJ9A 1PJUA 1V1HA 3D00A 1TBNA 7WGAA 1MT1A 1Z7KB 2ERWA 1TUSA 1V1IA 1HDLA 1M8CA 2WVJA 2NU4I 5E3PA 4FKDA 2M5XA 3HH2C 3UGIA 1Y1BA 2N52A 1SGPI 1ULKA 2V53A 3CXLA 1K7TA 4SGBI 1DS3I 4DNCA 1XA6A 2JYYA 4E1RA 2QPOA 2X52A 4A24A 2L7XA 3RU0A 2LUYA 1CHOI 2SGEI 3QAHA 1TBOA 2LB7A 2CJSC 3FSYA 3VDUA 2JA1A 1W4RA 2SGPI 1FARA 2ORWA 2XRCA 1PTQA 1CSOI 3FSXA 4UXIA 3OL0A 1UVGA 1KBEA 3PDNA 5CCMA 2DIPA 5HQ8A 3OXLA 3OVOA 5FUXA 1LR8A 1VDDA 5J8FA 1YTPA 1W3SA 1SGQI 2KMOA 2OU2A 1UHAA 2QQDA 1CGII 2CWGA 2ODDA 4GI3C 1LR9A 2ARPF 5JHWC 1R79A 3UFFA 1SGRI 2GKRI 1UUCA 2GKVA 2KMPA 3VE5A 3OXGA 4E1PA 3OXFA 1CT0I 5J8CA 2BUSA 5FUVA 1LR7A 2X3TA 1MJAA 5DAEA 2DKVA 3TJQA 1RFHA 1TBQR 4AMLA 3QWPA 5FUYA 1M8BA 1OYVI 1S20A 1WTJA 1X74A 2NU2I 2SGFI 1IW4A 1KMAA 2VRWB 1XBTA 4JCVE 1WGTA 1WGCA 4UXHA 1IY6A 1FYBA 1KBFA 1SGYI 1TURA 1X4SA 3SEKC 1ULNA 1SGEI 1Q9BA 2RC4A
chains in the Genus database with same CATH topology
2NU3I 1H0ZA 2N71A 5HI7A 2JZMA 3BJIA 2ENZA 2ROWA 2QQCA 1OMTA 1PTRA 2A20A 2KMRA 1FAQA 1CE3A 1CT2I 2YUUA 1SGNI 2JW6A 1YU6C 1PCEA 2WCYA 1NUBA 3SGQI 1Y8FA 2L8EA 2JXDA 2E73A 5EX0A 2QQEA 2F3CI 2SGDI 2W0TA 3B4VC 2LEOA 2ELIA 1PPFI 1N13A 1R0RI 3GOXA 2FNFX 1IY5A 2E5RA 2V1CA 2NU1I 2P6AC 3FC3A 1TGSI 3VDPA 3UGDA 4OVOA 2KCXA 2ENNA 1UVFA 1DS2I 5EX3A 3SGBI 2OD1A 1CT4I 2B0UC 1TIHA 1TBRR 1BMOA 2OVOA 2V1CC 1BUSA 2DB6A 1AN1I 1OMUA 3UEJA 1Y1CA 2NU0I 2YQPA 1OVOA 3MEKA 2J87A 2KMQA 2ORVA 4HGUA 1TOTA 4L9MA 2J9RA 2UZ3A 1CGJI 3E59A 5FUWA 2SGQI 3QTLD 2N17A 2QQ0A 2N1AB 3KY9A 2GVIA 5CCLA 1SGDI 2GKTI 3UEYA 1U5KA 1XX6A 3UGLA 4UXJA 3E2IA 4B6DA 2B8TA 1HJAI 1HPTA 1V1HA 1PJUA 3D00A 1TBNA 1MT1A 1Z7KB 2ERWA 1TUSA 1V1IA 1HDLA 1M8CA 2WVJA 2NU4I 4FKDA 2M5XA 3HH2C 3UGIA 1Y1BA 2N52A 1SGPI 2V53A 3CXLA 4SGBI 1DS3I 1XA6A 2JYYA 4E1RA 2QPOA 4A24A 2L7XA 3RU0A 2LUYA 1CHOI 2SGEI 1TBOA 2CJSC 3VDUA 2JA1A 1W4RA 2SGPI 1FARA 2ORWA 2XRCA 1PTQA 1CSOI 4UXIA 3OL0A 1UVGA 1KBEA 3PDNA 5CCMA 2DIPA 5HQ8A 3OXLA 3OVOA 1LR8A 1VDDA 1YTPA 1W3SA 1SGQI 2KMOA 5JHWC 2QQDA 1CGII 2ODDA 4GI3C 1LR9A 2ARPF 1R79A 3UFFA 1SGRI 2GKRI 1UUCA 2GKVA 2KMPA 3VE5A 3OXGA 4E1PA 3OXFA 1CT0I 2BUSA 5FUVA 1LR7A 3TJQA 5DAEA 1RFHA 1TBQR 3QWPA 5FUYA 1M8BA 1OYVI 1X74A 2NU2I 2SGFI 1KMAA 1IW4A 2VRWB 1XBTA 4JCVE 4UXHA 1IY6A 1FYBA 1KBFA 1SGYI 1TURA 1X4SA 3SEKC 1SGEI 2K9HA 5FUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W0T A;  2L8E A; 
#chains in the Genus database with same CATH topology
 1Z2I A;  2NU3 I;  1H0Z A;  2N71 A;  5HI7 A;  2JZM A;  1K7U A;  2ENZ A;  3BJI A;  2ROW A;  2QQC A;  1OMT A;  1PTR A;  2A20 A;  2KMR A;  1FAQ A;  2GIV A;  1CE3 A;  1CT2 I;  2YUU A;  1SGN I;  2JW6 A;  1YU6 C;  1PCE A;  2WCY A;  1NUB A;  4WP4 A;  5E3R A;  1Y8F A;  3SGQ I;  2L8E A;  3R5A A;  2UVO A;  2JXD A;  2E73 A;  3R5D A;  1WKX A;  5EX0 A;  2QQE A;  2F3C I;  2SGD I;  3R5B A;  2W0T A;  3B4V C;  1P9G A;  2CWF A;  2LEO A;  2ELI A;  1PPF I;  1N13 A;  1R0R I;  3GOX A;  2FNF X;  1IY5 A;  2E5R A;  2V1C A;  2NU1 I;  3R5C A;  3TOB A;  2P6A C;  3FC3 A;  1TGS I;  2Y0M A;  3VDP A;  3UGD A;  4OVO A;  2KCX A;  2ENN A;  1UVF A;  1P9Z A;  1DS2 I;  5EX3 A;  9WGA A;  2PQ8 A;  3SGB I;  2OD1 A;  1CT4 I;  2WGC A;  2B0U C;  1TIH A;  1TBR R;  1BMO A;  3TO7 A;  3TO6 A;  3TO9 A;  2OVO A;  2V1C C;  1BUS A;  2DB6 A;  1HEV A;  1K7V A;  1NXU A;  1AN1 I;  1MJB A;  1ULM A;  1OMU A;  3UEJ A;  1Y1C A;  2NU0 I;  2YQP A;  1OVO A;  3MEK A;  2J87 A;  2K9H A;  2KMQ A;  2ORV A;  4HGU A;  2RIJ A;  1TOT A;  4L9M A;  2J9R A;  2UZ3 A;  1CGJ I;  3E59 A;  5FUW A;  3UOE A;  2SGQ I;  3QTL D;  2N17 A;  2QQ0 A;  2N1A B;  3KY9 A;  2GVI A;  5CCL A;  1FY7 A;  1SGD I;  2GKT I;  3TOA A;  1U5K A;  1XX6 A;  3UEY A;  2CWH A;  3UGL A;  4UXJ A;  3E2I A;  4B6D A;  2OZU A;  5E3Q A;  4MPI A;  2B8T A;  1HJA I;  1HPT A;  1MJ9 A;  1PJU A;  1V1H A;  3D00 A;  1TBN A;  7WGA A;  1MT1 A;  1Z7K B;  2ERW A;  1TUS A;  1V1I A;  1HDL A;  1M8C A;  2WVJ A;  2NU4 I;  5E3P A;  4FKD A;  2M5X A;  3HH2 C;  3UGI A;  1Y1B A;  2N52 A;  1SGP I;  1ULK A;  2V53 A;  3CXL A;  1K7T A;  4SGB I;  1DS3 I;  4DNC A;  1XA6 A;  2JYY A;  4E1R A;  2QPO A;  2X52 A;  4A24 A;  2L7X A;  3RU0 A;  2LUY A;  1CHO I;  2SGE I;  3QAH A;  1TBO A;  2LB7 A;  2CJS C;  3FSY A;  3VDU A;  2JA1 A;  1W4R A;  2SGP I;  1FAR A;  2ORW A;  2XRC A;  1PTQ A;  1CSO I;  3FSX A;  4UXI A;  3OL0 A;  1UVG A;  1KBE A;  3PDN A;  5CCM A;  2DIP A;  5HQ8 A;  3OXL A;  3OVO A;  5FUX A;  1LR8 A;  1VDD A;  5J8F A;  1YTP A;  1W3S A;  1SGQ I;  2KMO A;  2OU2 A;  1UHA A;  2QQD A;  1CGI I;  2CWG A;  2ODD A;  4GI3 C;  1LR9 A;  2ARP F;  5JHW C;  1R79 A;  3UFF A;  1SGR I;  2GKR I;  1UUC A;  2GKV A;  2KMP A;  3VE5 A;  3OXG A;  4E1P A;  3OXF A;  1CT0 I;  5J8C A;  2BUS A;  5FUV A;  1LR7 A;  2X3T A;  1MJA A;  5DAE A;  2DKV A;  3TJQ A;  1RFH A;  1TBQ R;  4AML A;  3QWP A;  5FUY A;  1M8B A;  1OYV I;  1S20 A;  1WTJ A;  1X74 A;  2NU2 I;  2SGF I;  1IW4 A;  1KMA A;  2VRW B;  1XBT A;  4JCV E;  1WGT A;  1WGC A;  4UXH A;  1IY6 A;  1FYB A;  1KBF A;  1SGY I;  1TUR A;  1X4S A;  3SEK C;  1ULN A;  1SGE I;  1Q9B A;  2RC4 A; 
#chains in the Genus database with same CATH homology
 2NU3 I;  1H0Z A;  2N71 A;  5HI7 A;  2JZM A;  3BJI A;  2ENZ A;  2ROW A;  2QQC A;  1OMT A;  1PTR A;  2A20 A;  2KMR A;  1FAQ A;  1CE3 A;  1CT2 I;  2YUU A;  1SGN I;  2JW6 A;  1YU6 C;  1PCE A;  2WCY A;  1NUB A;  3SGQ I;  1Y8F A;  2L8E A;  2JXD A;  2E73 A;  5EX0 A;  2QQE A;  2F3C I;  2SGD I;  2W0T A;  3B4V C;  2LEO A;  2ELI A;  1PPF I;  1N13 A;  1R0R I;  3GOX A;  2FNF X;  1IY5 A;  2E5R A;  2V1C A;  2NU1 I;  2P6A C;  3FC3 A;  1TGS I;  3VDP A;  3UGD A;  4OVO A;  2KCX A;  2ENN A;  1UVF A;  1DS2 I;  5EX3 A;  3SGB I;  2OD1 A;  1CT4 I;  2B0U C;  1TIH A;  1TBR R;  1BMO A;  2OVO A;  2V1C C;  1BUS A;  2DB6 A;  1AN1 I;  1OMU A;  3UEJ A;  1Y1C A;  2NU0 I;  2YQP A;  1OVO A;  3MEK A;  2J87 A;  2KMQ A;  2ORV A;  4HGU A;  1TOT A;  4L9M A;  2J9R A;  2UZ3 A;  1CGJ I;  3E59 A;  5FUW A;  2SGQ I;  3QTL D;  2N17 A;  2QQ0 A;  2N1A B;  3KY9 A;  2GVI A;  5CCL A;  1SGD I;  2GKT I;  3UEY A;  1U5K A;  1XX6 A;  3UGL A;  4UXJ A;  3E2I A;  4B6D A;  2B8T A;  1HJA I;  1HPT A;  1V1H A;  1PJU A;  3D00 A;  1TBN A;  1MT1 A;  1Z7K B;  2ERW A;  1TUS A;  1V1I A;  1HDL A;  1M8C A;  2WVJ A;  2NU4 I;  4FKD A;  2M5X A;  3HH2 C;  3UGI A;  1Y1B A;  2N52 A;  1SGP I;  2V53 A;  3CXL A;  4SGB I;  1DS3 I;  1XA6 A;  2JYY A;  4E1R A;  2QPO A;  4A24 A;  2L7X A;  3RU0 A;  2LUY A;  1CHO I;  2SGE I;  1TBO A;  2CJS C;  3VDU A;  2JA1 A;  1W4R A;  2SGP I;  1FAR A;  2ORW A;  2XRC A;  1PTQ A;  1CSO I;  4UXI A;  3OL0 A;  1UVG A;  1KBE A;  3PDN A;  5CCM A;  2DIP A;  5HQ8 A;  3OXL A;  3OVO A;  1LR8 A;  1VDD A;  1YTP A;  1W3S A;  1SGQ I;  2KMO A;  5JHW C;  2QQD A;  1CGI I;  2ODD A;  4GI3 C;  1LR9 A;  2ARP F;  1R79 A;  3UFF A;  1SGR I;  2GKR I;  1UUC A;  2GKV A;  2KMP A;  3VE5 A;  3OXG A;  4E1P A;  3OXF A;  1CT0 I;  2BUS A;  5FUV A;  1LR7 A;  3TJQ A;  5DAE A;  1RFH A;  1TBQ R;  3QWP A;  5FUY A;  1M8B A;  1OYV I;  1X74 A;  2NU2 I;  2SGF I;  1KMA A;  1IW4 A;  2VRW B;  1XBT A;  4JCV E;  4UXH A;  1IY6 A;  1FYB A;  1KBF A;  1SGY I;  1TUR A;  1X4S A;  3SEK C;  1SGE I;  2K9H A;  5FUX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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