1SGEI

Glu 18 variant of turkey ovomucoid inhibitor third domain complexed with streptomyces griseus proteinase b at ph 6.5
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTEEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptogrisin B
publication title Recruitment of a Buried K+ Ion to Stabilize the Negative Charge of Ionized P1 in the Hydrophobic Pocket: Crystal Structures of Glu18, Gln18, Asp18 and Asn18 Variants of Turkey Ovomucoid Inhibitor Third Domain Complexed with Streptomyces griseus Protease B at Various pHs
rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase/hydrolase inhibitor
total genus 13
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1999-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1sgeI00
1DS2I 2GKVA 1HPTA 2KMRA 1Z7KB 4GI3C 1M8BA 2B0UC 2NU3I 3B4VC 2N71A 1BMOA 2LEOA 1SGYI 1DS3I 2SGEI 1TUSA 1PPFI 1TURA 1Y1CA 2JXDA 4OVOA 1SGNI 1UVGA 2JZMA 1CT4I 1LR8A 1CE3A 1PCEA 1M8CA 1LR7A 1CSOI 3OVOA 2ERWA 2N17A 1OYVI 3SGQI 1IW4A 2OVOA 1SGPI 2BUSA 1BUSA 1YTPA 1UVFA 2KMQA 2SGPI 2NU4I 1SGQI 2NU0I 2ARPF 1KMAA 1MT1A 2KCXA 1OVOA 2V53A 1OMUA 2F3CI 1N13A 3SEKC 3TJQA 2KMOA 2JYYA 1AN1I 5DAEA 2NU2I 3QTLD 1TGSI 3HH2C 1CGJI 2KMPA 2SGFI 4HGUA 1YU6C 2SGQI 2N52A 1TIHA 1SGDI 2GKTI 1TBQR 1HJAI 1IY6A 2M5XA 2QQCA 2QQDA 1FYBA 1H0ZA 1CGII 2XRCA 2SGDI 1IY5A 2P6AC 2NU1I 1UUCA 1SGEI 1CT0I 2GKRI 3SGBI 1NUBA 1PJUA 1CHOI 1Y1BA 5JHWC 1LR9A 1R0RI 1TBRR 1HDLA 1OMTA 2WCYA 4SGBI 1CT2I 1SGRI
chains in the Genus database with same CATH superfamily
2LB7A 1DS2I 1Q9BA 3GOXA 2WVJA 2GKVA 2LUYA 1HPTA 2GVIA 1W3SA 2KMRA 2OZUA 1Z7KB 4E1PA 4GI3C 1M8BA 2B0UC 2NU3I 3B4VC 2N71A 1ULMA 1BMOA 1TBOA 2Y0MA 2LEOA 2CWFA 1SGYI 1DS3I 4MPIA 5CCLA 2SGEI 1TUSA 1PPFI 2V1CC 1P9ZA 1TURA 1Y1CA 1WKXA 2PQ8A 1NXUA 2JXDA 4OVOA 1SGNI 1UVGA 2ENZA 2GIVA 2JZMA 3R5DA 1WGTA 1CT4I 1KBEA 1LR8A 2DB6A 1CE3A 2ODDA 2QQ0A 1PCEA 1M8CA 5E3PA 1U5KA 1X4SA 1LR7A 4FKDA 1V1HA 4UXIA 1CSOI 1K7TA 1Z2IA 3R5AA 4L9MA 3OVOA 4WP4A 2OU2A 3TJQA 2ERWA 7WGAA 2CWGA 2ROWA 3VDUA 1VDDA 2N17A 3TOAA 1OYVI 3OXLA 3SGQI 1IW4A 2OVOA 5FUXA 1W4RA 1SGPI 4DNCA 2BUSA 3UFFA 2YUUA 1WTJA 3E2IA 1BUSA 3VDPA 2E5RA 1WGCA 1YTPA 3RU0A 5FUVA 3PDNA 1MJAA 1UVFA 5FUYA 2KMQA 3OXGA 3E59A 2SGPI 3D00A 2NU4I 2W0TA 3R5BA 3FC3A 1SGQI 2NU0I 5E3QA 2ARPF 1KMAA 3OXFA 1MT1A 2KCXA 2WGCA 1K7VA 5J8FA 1OVOA 2J9RA 2V53A 2VRWB 4A24A 4UXJA 1TBNA 1OMUA 2OD1A 2K9HA 5EX0A 3UOEA 2X52A 3QAHA 5FUWA 2F3CI 3MEKA 1N13A 4E1RA 1FY7A 2L8EA 2KMOA 2JYYA 1AN1I 2E73A 3R5CA 3SEKC 5DAEA 2NU2I 3OL0A 2A20A 3QTLD 1TOTA 1FARA 2DIPA 2QPOA 4AMLA 1KBFA 1TGSI 3HH2C 1CGJI 1Y8FA 5HQ8A 1XA6A 2KMPA 2L7XA 2ORVA 2SGFI 1ULKA 3UGLA 4HGUA 1YU6C 3UGDA 2SGQI 3FSYA 1PTRA 3KY9A 2V1CA 2N52A 9WGAA 2ELIA 2RC4A 2YQPA 2ORWA 3QWPA 4UXHA 1PTQA 3CXLA 1TIHA 1SGDI 2GKTI 3TO9A 2UVOA 4B6DA 3TOBA 1TBQR 1HJAI 5EX3A 1UHAA 1FAQA 1IY6A 2RIJA 1K7UA 2M5XA 5CCMA 2ENNA 2QQCA 2QQDA 2N1AB 1FYBA 5J8CA 1H0ZA 5E3RA 1CGII 3TO6A 2XRCA 3VE5A 2SGDI 2CJSC 4JCVE 1S20A 1IY5A 2P6AC 2NU1I 1HEVA 2B8TA 1UUCA 2FNFX 1SGEI 2QQEA 1RFHA 1CT0I 2GKRI 3BJIA 3SGBI 1NUBA 1PJUA 2CWHA 1CHOI 5HI7A 1XX6A 3UEJA 2JW6A 1V1IA 2JA1A 1Y1BA 5JHWC 1LR9A 1R0RI 1ULNA 3FSXA 1TBRR 1X74A 2UZ3A 3TO7A 1HDLA 1OMTA 2X3TA 2WCYA 4SGBI 2DKVA 3UEYA 2J87A 1MJBA 1R79A 1XBTA 1P9GA 1MJ9A 1CT2I 1SGRI 3UGIA
chains in the Genus database with same CATH topology
1DS2I 3GOXA 2WVJA 2GKVA 2LUYA 1HPTA 2GVIA 1W3SA 2KMRA 1Z7KB 4GI3C 1M8BA 2B0UC 2NU3I 3B4VC 2N71A 1BMOA 1TBOA 2LEOA 1SGYI 1DS3I 5CCLA 2SGEI 1TUSA 1PPFI 1TURA 1Y1CA 2JXDA 4OVOA 1SGNI 1UVGA 2ENZA 2JZMA 1CT4I 1KBEA 1LR8A 2DB6A 1CE3A 2ODDA 2QQ0A 1PCEA 1M8CA 1U5KA 1X4SA 1LR7A 4FKDA 1V1HA 4UXIA 1CSOI 4L9MA 3OVOA 2ERWA 2ROWA 3VDUA 1VDDA 2N17A 1OYVI 3OXLA 3SGQI 1IW4A 2OVOA 5FUXA 1W4RA 1SGPI 2BUSA 3UFFA 2YUUA 3E2IA 1BUSA 3VDPA 2E5RA 1YTPA 3RU0A 5FUVA 3PDNA 1UVFA 5FUYA 2KMQA 3OXGA 3E59A 2SGPI 3D00A 2NU4I 2W0TA 3FC3A 1SGQI 2NU0I 2ARPF 1KMAA 3OXFA 1MT1A 2KCXA 1OVOA 2J9RA 2V53A 2VRWB 4A24A 4UXJA 1TBNA 1OMUA 2OD1A 2K9HA 5EX0A 5FUWA 2F3CI 3MEKA 1N13A 4E1RA 3SEKC 2L8EA 2KMOA 2JYYA 1AN1I 2E73A 3TJQA 4E1PA 5DAEA 2NU2I 3OL0A 2A20A 3QTLD 1TOTA 1FARA 2DIPA 2QPOA 1KBFA 1TGSI 3HH2C 1CGJI 1Y8FA 5HQ8A 1XA6A 2KMPA 2L7XA 2ORVA 2SGFI 3UGLA 3UGDA 4HGUA 1YU6C 2SGQI 3KY9A 1PTRA 2V1CA 2N52A 2ELIA 2YQPA 3QWPA 2ORWA 4UXHA 1PTQA 3CXLA 1TIHA 1SGDI 2GKTI 4B6DA 1TBQR 1HJAI 5EX3A 1FAQA 1IY6A 2M5XA 5CCMA 2QQCA 2QQDA 2N1AB 1FYBA 1H0ZA 1CGII 2XRCA 3VE5A 2SGDI 2CJSC 4JCVE 1IY5A 2P6AC 2NU1I 2B8TA 1UUCA 2FNFX 1SGEI 2QQEA 1RFHA 1CT0I 2GKRI 3BJIA 3SGBI 1NUBA 1PJUA 5HI7A 1CHOI 1XX6A 3UEJA 2JW6A 1V1IA 2JA1A 1Y1BA 5JHWC 1LR9A 1R0RI 1TBRR 1X74A 2UZ3A 1HDLA 1OMTA 2WCYA 4SGBI 3UEYA 2J87A 1XBTA 1R79A 2V1CC 2ENNA 1CT2I 1SGRI 3UGIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DS2 I;  2GKV A;  1HPT A;  2KMR A;  1Z7K B;  4GI3 C;  1M8B A;  2B0U C;  2NU3 I;  3B4V C;  2N71 A;  1BMO A;  2LEO A;  1SGY I;  1DS3 I;  2SGE I;  1TUS A;  1PPF I;  1TUR A;  1Y1C A;  2JXD A;  4OVO A;  1SGN I;  1UVG A;  2JZM A;  1CT4 I;  1LR8 A;  1CE3 A;  1PCE A;  1M8C A;  1LR7 A;  1CSO I;  3OVO A;  2ERW A;  2N17 A;  1OYV I;  3SGQ I;  1IW4 A;  2OVO A;  1SGP I;  2BUS A;  1BUS A;  1YTP A;  1UVF A;  2KMQ A;  2SGP I;  2NU4 I;  1SGQ I;  2NU0 I;  2ARP F;  1KMA A;  1MT1 A;  2KCX A;  1OVO A;  2V53 A;  1OMU A;  2F3C I;  1N13 A;  3SEK C;  3TJQ A;  2KMO A;  2JYY A;  1AN1 I;  5DAE A;  2NU2 I;  3QTL D;  1TGS I;  3HH2 C;  1CGJ I;  2KMP A;  2SGF I;  4HGU A;  1YU6 C;  2SGQ I;  2N52 A;  1TIH A;  1SGD I;  2GKT I;  1TBQ R;  1HJA I;  1IY6 A;  2M5X A;  2QQC A;  2QQD A;  1FYB A;  1H0Z A;  1CGI I;  2XRC A;  2SGD I;  1IY5 A;  2P6A C;  2NU1 I;  1UUC A;  1SGE I;  1CT0 I;  2GKR I;  3SGB I;  1NUB A;  1PJU A;  1CHO I;  1Y1B A;  5JHW C;  1LR9 A;  1R0R I;  1TBR R;  1HDL A;  1OMT A;  2WCY A;  4SGB I;  1CT2 I;  1SGR I; 
#chains in the Genus database with same CATH topology
 2LB7 A;  1DS2 I;  1Q9B A;  3GOX A;  2WVJ A;  2GKV A;  2LUY A;  1HPT A;  2GVI A;  1W3S A;  2KMR A;  2OZU A;  1Z7K B;  4E1P A;  4GI3 C;  1M8B A;  2B0U C;  2NU3 I;  3B4V C;  2N71 A;  1ULM A;  1BMO A;  1TBO A;  2Y0M A;  2LEO A;  2CWF A;  1SGY I;  1DS3 I;  4MPI A;  5CCL A;  2SGE I;  1TUS A;  1PPF I;  2V1C C;  1P9Z A;  1TUR A;  1Y1C A;  1WKX A;  2PQ8 A;  1NXU A;  2JXD A;  4OVO A;  1SGN I;  1UVG A;  2ENZ A;  2GIV A;  2JZM A;  3R5D A;  1WGT A;  1CT4 I;  1KBE A;  1LR8 A;  2DB6 A;  1CE3 A;  2ODD A;  2QQ0 A;  1PCE A;  1M8C A;  5E3P A;  1U5K A;  1X4S A;  1LR7 A;  4FKD A;  1V1H A;  4UXI A;  1CSO I;  1K7T A;  1Z2I A;  3R5A A;  4L9M A;  3OVO A;  4WP4 A;  2OU2 A;  3TJQ A;  2ERW A;  7WGA A;  2CWG A;  2ROW A;  3VDU A;  1VDD A;  2N17 A;  3TOA A;  1OYV I;  3OXL A;  3SGQ I;  1IW4 A;  2OVO A;  5FUX A;  1W4R A;  1SGP I;  4DNC A;  2BUS A;  3UFF A;  2YUU A;  1WTJ A;  3E2I A;  1BUS A;  3VDP A;  2E5R A;  1WGC A;  1YTP A;  3RU0 A;  5FUV A;  3PDN A;  1MJA A;  1UVF A;  5FUY A;  2KMQ A;  3OXG A;  3E59 A;  2SGP I;  3D00 A;  2NU4 I;  2W0T A;  3R5B A;  3FC3 A;  1SGQ I;  2NU0 I;  5E3Q A;  2ARP F;  1KMA A;  3OXF A;  1MT1 A;  2KCX A;  2WGC A;  1K7V A;  5J8F A;  1OVO A;  2J9R A;  2V53 A;  2VRW B;  4A24 A;  4UXJ A;  1TBN A;  1OMU A;  2OD1 A;  2K9H A;  5EX0 A;  3UOE A;  2X52 A;  3QAH A;  5FUW A;  2F3C I;  3MEK A;  1N13 A;  4E1R A;  1FY7 A;  2L8E A;  2KMO A;  2JYY A;  1AN1 I;  2E73 A;  3R5C A;  3SEK C;  5DAE A;  2NU2 I;  3OL0 A;  2A20 A;  3QTL D;  1TOT A;  1FAR A;  2DIP A;  2QPO A;  4AML A;  1KBF A;  1TGS I;  3HH2 C;  1CGJ I;  1Y8F A;  5HQ8 A;  1XA6 A;  2KMP A;  2L7X A;  2ORV A;  2SGF I;  1ULK A;  3UGL A;  4HGU A;  1YU6 C;  3UGD A;  2SGQ I;  3FSY A;  1PTR A;  3KY9 A;  2V1C A;  2N52 A;  9WGA A;  2ELI A;  2RC4 A;  2YQP A;  2ORW A;  3QWP A;  4UXH A;  1PTQ A;  3CXL A;  1TIH A;  1SGD I;  2GKT I;  3TO9 A;  2UVO A;  4B6D A;  3TOB A;  1TBQ R;  1HJA I;  5EX3 A;  1UHA A;  1FAQ A;  1IY6 A;  2RIJ A;  1K7U A;  2M5X A;  5CCM A;  2ENN A;  2QQC A;  2QQD A;  2N1A B;  1FYB A;  5J8C A;  1H0Z A;  5E3R A;  1CGI I;  3TO6 A;  2XRC A;  3VE5 A;  2SGD I;  2CJS C;  4JCV E;  1S20 A;  1IY5 A;  2P6A C;  2NU1 I;  1HEV A;  2B8T A;  1UUC A;  2FNF X;  1SGE I;  2QQE A;  1RFH A;  1CT0 I;  2GKR I;  3BJI A;  3SGB I;  1NUB A;  1PJU A;  2CWH A;  1CHO I;  5HI7 A;  1XX6 A;  3UEJ A;  2JW6 A;  1V1I A;  2JA1 A;  1Y1B A;  5JHW C;  1LR9 A;  1R0R I;  1ULN A;  3FSX A;  1TBR R;  1X74 A;  2UZ3 A;  3TO7 A;  1HDL A;  1OMT A;  2X3T A;  2WCY A;  4SGB I;  2DKV A;  3UEY A;  2J87 A;  1MJB A;  1R79 A;  1XBT A;  1P9G A;  1MJ9 A;  1CT2 I;  1SGR I;  3UGI A; 
#chains in the Genus database with same CATH homology
 1DS2 I;  3GOX A;  2WVJ A;  2GKV A;  2LUY A;  1HPT A;  2GVI A;  1W3S A;  2KMR A;  1Z7K B;  4GI3 C;  1M8B A;  2B0U C;  2NU3 I;  3B4V C;  2N71 A;  1BMO A;  1TBO A;  2LEO A;  1SGY I;  1DS3 I;  5CCL A;  2SGE I;  1TUS A;  1PPF I;  1TUR A;  1Y1C A;  2JXD A;  4OVO A;  1SGN I;  1UVG A;  2ENZ A;  2JZM A;  1CT4 I;  1KBE A;  1LR8 A;  2DB6 A;  1CE3 A;  2ODD A;  2QQ0 A;  1PCE A;  1M8C A;  1U5K A;  1X4S A;  1LR7 A;  4FKD A;  1V1H A;  4UXI A;  1CSO I;  4L9M A;  3OVO A;  2ERW A;  2ROW A;  3VDU A;  1VDD A;  2N17 A;  1OYV I;  3OXL A;  3SGQ I;  1IW4 A;  2OVO A;  5FUX A;  1W4R A;  1SGP I;  2BUS A;  3UFF A;  2YUU A;  3E2I A;  1BUS A;  3VDP A;  2E5R A;  1YTP A;  3RU0 A;  5FUV A;  3PDN A;  1UVF A;  5FUY A;  2KMQ A;  3OXG A;  3E59 A;  2SGP I;  3D00 A;  2NU4 I;  2W0T A;  3FC3 A;  1SGQ I;  2NU0 I;  2ARP F;  1KMA A;  3OXF A;  1MT1 A;  2KCX A;  1OVO A;  2J9R A;  2V53 A;  2VRW B;  4A24 A;  4UXJ A;  1TBN A;  1OMU A;  2OD1 A;  2K9H A;  5EX0 A;  5FUW A;  2F3C I;  3MEK A;  1N13 A;  4E1R A;  3SEK C;  2L8E A;  2KMO A;  2JYY A;  1AN1 I;  2E73 A;  3TJQ A;  4E1P A;  5DAE A;  2NU2 I;  3OL0 A;  2A20 A;  3QTL D;  1TOT A;  1FAR A;  2DIP A;  2QPO A;  1KBF A;  1TGS I;  3HH2 C;  1CGJ I;  1Y8F A;  5HQ8 A;  1XA6 A;  2KMP A;  2L7X A;  2ORV A;  2SGF I;  3UGL A;  3UGD A;  4HGU A;  1YU6 C;  2SGQ I;  3KY9 A;  1PTR A;  2V1C A;  2N52 A;  2ELI A;  2YQP A;  3QWP A;  2ORW A;  4UXH A;  1PTQ A;  3CXL A;  1TIH A;  1SGD I;  2GKT I;  4B6D A;  1TBQ R;  1HJA I;  5EX3 A;  1FAQ A;  1IY6 A;  2M5X A;  5CCM A;  2QQC A;  2QQD A;  2N1A B;  1FYB A;  1H0Z A;  1CGI I;  2XRC A;  3VE5 A;  2SGD I;  2CJS C;  4JCV E;  1IY5 A;  2P6A C;  2NU1 I;  2B8T A;  1UUC A;  2FNF X;  1SGE I;  2QQE A;  1RFH A;  1CT0 I;  2GKR I;  3BJI A;  3SGB I;  1NUB A;  1PJU A;  5HI7 A;  1CHO I;  1XX6 A;  3UEJ A;  2JW6 A;  1V1I A;  2JA1 A;  1Y1B A;  5JHW C;  1LR9 A;  1R0R I;  1TBR R;  1X74 A;  2UZ3 A;  1HDL A;  1OMT A;  2WCY A;  4SGB I;  3UEY A;  2J87 A;  1XBT A;  1R79 A;  2V1C C;  2ENN A;  1CT2 I;  1SGR I;  3UGI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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