2JXDA

Nmr structure of human serine protease inhibitor kazal type ii (spink2)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
62
structure length
62
Chain Sequence
PQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
source organism Homo sapiens
publication title Identification of trypsin-inhibitory site and structure determination of human SPINK2 serine proteinase inhibitor
pubmed doi rcsb
molecule keywords Serine protease inhibitor Kazal-type 2
total genus 9
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 2007-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2jxdA00
1LR7A 1BMOA 1TURA 2GKTI 3SEKC 1Y1CA 1FYBA 1PPFI 1SGNI 1TBQR 2JXDA 1TGSI 2GKRI 2V53A 2XRCA 1IY6A 2JYYA 2SGPI 1DS3I 1YTPA 1UVGA 1M8CA 1KMAA 3TJQA 2NU2I 1SGRI 2LEOA 1NUBA 1HDLA 3SGBI 1YU6C 2N52A 1CT4I 2QQDA 1OMTA 4OVOA 2KCXA 1R0RI 2OVOA 1CT0I 5JHWC 2KMRA 1N13A 2KMOA 4SGBI 2ERWA 2N71A 2NU3I 1HJAI 1SGYI 3B4VC 1UVFA 2WCYA 1HPTA 4GI3C 1SGDI 1TBRR 2KMPA 1AN1I 2NU4I 1TUSA 1LR9A 1PCEA 2ARPF 1CHOI 1SGQI 2KMQA 2NU0I 2QQCA 1H0ZA 5DAEA 1CSOI 1IY5A 4HGUA 1MT1A 2NU1I 1M8BA 3HH2C 2SGEI 1PJUA 1BUSA 1OYVI 2JZMA 1DS2I 3QTLD 1CGJI 1OVOA 1TIHA 2N17A 1IW4A 2GKVA 2SGDI 2P6AC 1UUCA 2B0UC 1SGPI 1SGEI 3SGQI 1CT2I 1LR8A 1Y1BA 1CE3A 1Z7KB 2SGFI 1CGII 2SGQI 3OVOA 1OMUA 2M5XA 2BUSA 2F3CI
chains in the Genus database with same CATH superfamily
1P9ZA 1RFHA 1LR7A 2OZUA 3TOAA 3UEYA 4E1PA 3UGIA 1BMOA 1TURA 2B8TA 3FSYA 1V1IA 3UFFA 2GKTI 1TBOA 2QQEA 1UHAA 3SEKC 1Y1CA 1KBFA 1FYBA 1PPFI 1Z2IA 5EX0A 3E2IA 9WGAA 1SGNI 1MJAA 1TBQR 1K7VA 1XX6A 5HQ8A 1Y8FA 1TOTA 3UGDA 2JXDA 1TGSI 2GKRI 2V1CA 2ROWA 2V53A 2XRCA 2JYYA 2N1AB 3QAHA 2SGPI 1IY6A 5E3QA 1DS3I 4UXHA 1YTPA 1PTRA 2LUYA 2ORWA 3TO7A 3UEJA 2CWHA 2GVIA 2LB7A 3OXFA 1UVGA 1M8CA 1HEVA 1KMAA 3FSXA 3TJQA 1KBEA 1ULMA 2NU2I 5FUXA 1SGRI 2RIJA 2JA1A 2LEOA 5EX3A 1NUBA 2DKVA 1HDLA 3SGBI 1YU6C 2CWGA 2N52A 2ENNA 1CT4I 1S20A 2QQDA 1OMTA 4OVOA 2E73A 5E3PA 3RU0A 2DIPA 2KCXA 1R0RI 2OVOA 1X74A 2OD1A 4B6DA 3MEKA 3QWPA 1CT0I 4DNCA 2KMRA 1N13A 1Q9BA 2ELIA 2ORVA 3R5CA 2CJSC 5JHWC 2KMOA 4SGBI 2ERWA 2N71A 2NU3I 1HJAI 1SGYI 5FUYA 1W3SA 3B4VC 3OXLA 1WKXA 2PQ8A 3PDNA 5FUWA 2X52A 1WGCA 1UVFA 2L7XA 2UVOA 2W0TA 1HPTA 2K9HA 2WCYA 4E1RA 4GI3C 1SGDI 1TBRR 2KMPA 2VRWB 1K7UA 1AN1I 2RC4A 2NU4I 2ENZA 2Y0MA 3CXLA 4A24A 1TUSA 5HI7A 1FARA 1LR9A 1PCEA 2ARPF 1CHOI 1SGQI 2KMQA 3D00A 2NU0I 2JW6A 1NXUA 3R5BA 1X4SA 1WTJA 2QQCA 1H0ZA 1MJBA 5J8CA 5DAEA 1CSOI 1R79A 1IY5A 4HGUA 2CWFA 2FNFX 3GOXA 1MT1A 1U5KA 2NU1I 4UXIA 3UOEA 1K7TA 1TBNA 2GIVA 2ODDA 1M8BA 5J8FA 2QQ0A 1MJ9A 3R5DA 3HH2C 4UXJA 5E3RA 3VE5A 3TO6A 2SGEI 1PJUA 5CCLA 1BUSA 2E5RA 3TO9A 4L9MA 2L8EA 4JCVE 1ULKA 1OYVI 2V1CC 1PTQA 2YUUA 1XA6A 2DB6A 2JZMA 3E59A 4MPIA 1DS2I 1W4RA 3QTLD 1ULNA 2X3TA 1CGJI 3R5AA 1OVOA 1FAQA 3VDPA 1TIHA 7WGAA 1FY7A 3UGLA 1VDDA 2A20A 2N17A 2YQPA 1IW4A 3KY9A 2GKVA 2SGDI 2P6AC 1V1HA 2J87A 1UUCA 1WGTA 2B0UC 1P9GA 1SGPI 1SGEI 2WVJA 1CT2I 2WGCA 1LR8A 1Y1BA 3SGQI 4AMLA 2OU2A 3TOBA 1Z7KB 2SGFI 1CE3A 1CGII 2SGQI 2J9RA 3OXGA 5FUVA 5CCMA 3OVOA 4WP4A 1OMUA 2QPOA 2M5XA 3FC3A 2BUSA 2F3CI 4FKDA 3BJIA 2UZ3A 3VDUA 3OL0A 1XBTA
chains in the Genus database with same CATH topology
1RFHA 1LR7A 3UEYA 4E1PA 3UGIA 1BMOA 1TURA 2B8TA 1V1IA 3UFFA 2GKTI 1TBOA 2QQEA 3SEKC 1Y1CA 1KBFA 1FYBA 1PPFI 5EX0A 3E2IA 1SGNI 1TBQR 1XX6A 5HQ8A 1Y8FA 1TOTA 3UGDA 2JXDA 1TGSI 2GKRI 2V1CA 2ROWA 2V53A 2XRCA 2JYYA 2N1AB 1IY6A 2SGPI 1DS3I 4UXHA 1YTPA 1PTRA 2LUYA 2ORWA 3UEJA 2GVIA 3OXFA 1UVGA 1M8CA 1KMAA 3TJQA 1KBEA 2NU2I 5FUXA 1SGRI 2JA1A 2LEOA 5EX3A 1NUBA 1HDLA 3SGBI 1YU6C 2N52A 2ENNA 1CT4I 2QQDA 1OMTA 4OVOA 2E73A 3RU0A 2DIPA 2KCXA 1R0RI 2OVOA 1X74A 2OD1A 4B6DA 3MEKA 3QWPA 1CT0I 5JHWC 2KMRA 1N13A 2ELIA 2ORVA 2CJSC 2KMOA 4SGBI 2ERWA 2N71A 2NU3I 1HJAI 1SGYI 5FUYA 1W3SA 3B4VC 3OXLA 3PDNA 5FUWA 1UVFA 2L7XA 2W0TA 2WCYA 1HPTA 2K9HA 4E1RA 4GI3C 1SGDI 1TBRR 2KMPA 2VRWB 3OL0A 1AN1I 3CXLA 2NU4I 2ENZA 4A24A 1TUSA 5HI7A 1LR9A 1FARA 1PCEA 2ARPF 1CHOI 1SGQI 2KMQA 3D00A 2NU0I 2JW6A 1X4SA 2QQCA 1H0ZA 5DAEA 1CSOI 1R79A 1IY5A 4HGUA 2FNFX 1MT1A 1U5KA 2NU1I 4UXIA 3GOXA 1TBNA 2ODDA 1M8BA 2QQ0A 4UXJA 3VE5A 3HH2C 2SGEI 1PJUA 5CCLA 1BUSA 2E5RA 4L9MA 2L8EA 4JCVE 1OYVI 2V1CC 2YUUA 1PTQA 1XA6A 2DB6A 2JZMA 3E59A 1DS2I 1W4RA 3QTLD 1CGJI 1OVOA 1FAQA 3VDPA 1TIHA 3UGLA 1VDDA 2A20A 2N17A 2YQPA 1IW4A 3KY9A 2GKVA 2SGDI 2P6AC 1V1HA 2J87A 1UUCA 2B0UC 1SGPI 2WVJA 1SGEI 3SGQI 1CT2I 1LR8A 1Y1BA 1CE3A 1Z7KB 2SGFI 1CGII 2SGQI 2J9RA 3OXGA 5FUVA 5CCMA 3OVOA 1OMUA 2QPOA 2M5XA 3FC3A 2BUSA 2F3CI 4FKDA 3BJIA 2UZ3A 3VDUA 1XBTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LR7 A;  1BMO A;  1TUR A;  2GKT I;  3SEK C;  1Y1C A;  1FYB A;  1PPF I;  1SGN I;  1TBQ R;  2JXD A;  1TGS I;  2GKR I;  2V53 A;  2XRC A;  1IY6 A;  2JYY A;  2SGP I;  1DS3 I;  1YTP A;  1UVG A;  1M8C A;  1KMA A;  3TJQ A;  2NU2 I;  1SGR I;  2LEO A;  1NUB A;  1HDL A;  3SGB I;  1YU6 C;  2N52 A;  1CT4 I;  2QQD A;  1OMT A;  4OVO A;  2KCX A;  1R0R I;  2OVO A;  1CT0 I;  5JHW C;  2KMR A;  1N13 A;  2KMO A;  4SGB I;  2ERW A;  2N71 A;  2NU3 I;  1HJA I;  1SGY I;  3B4V C;  1UVF A;  2WCY A;  1HPT A;  4GI3 C;  1SGD I;  1TBR R;  2KMP A;  1AN1 I;  2NU4 I;  1TUS A;  1LR9 A;  1PCE A;  2ARP F;  1CHO I;  1SGQ I;  2KMQ A;  2NU0 I;  2QQC A;  1H0Z A;  5DAE A;  1CSO I;  1IY5 A;  4HGU A;  1MT1 A;  2NU1 I;  1M8B A;  3HH2 C;  2SGE I;  1PJU A;  1BUS A;  1OYV I;  2JZM A;  1DS2 I;  3QTL D;  1CGJ I;  1OVO A;  1TIH A;  2N17 A;  1IW4 A;  2GKV A;  2SGD I;  2P6A C;  1UUC A;  2B0U C;  1SGP I;  1SGE I;  3SGQ I;  1CT2 I;  1LR8 A;  1Y1B A;  1CE3 A;  1Z7K B;  2SGF I;  1CGI I;  2SGQ I;  3OVO A;  1OMU A;  2M5X A;  2BUS A;  2F3C I; 
#chains in the Genus database with same CATH topology
 1P9Z A;  1RFH A;  1LR7 A;  2OZU A;  3TOA A;  3UEY A;  4E1P A;  3UGI A;  1BMO A;  1TUR A;  2B8T A;  3FSY A;  1V1I A;  3UFF A;  2GKT I;  1TBO A;  2QQE A;  1UHA A;  3SEK C;  1Y1C A;  1KBF A;  1FYB A;  1PPF I;  1Z2I A;  5EX0 A;  3E2I A;  9WGA A;  1SGN I;  1MJA A;  1TBQ R;  1K7V A;  1XX6 A;  5HQ8 A;  1Y8F A;  1TOT A;  3UGD A;  2JXD A;  1TGS I;  2GKR I;  2V1C A;  2ROW A;  2V53 A;  2XRC A;  2JYY A;  2N1A B;  3QAH A;  2SGP I;  1IY6 A;  5E3Q A;  1DS3 I;  4UXH A;  1YTP A;  1PTR A;  2LUY A;  2ORW A;  3TO7 A;  3UEJ A;  2CWH A;  2GVI A;  2LB7 A;  3OXF A;  1UVG A;  1M8C A;  1HEV A;  1KMA A;  3FSX A;  3TJQ A;  1KBE A;  1ULM A;  2NU2 I;  5FUX A;  1SGR I;  2RIJ A;  2JA1 A;  2LEO A;  5EX3 A;  1NUB A;  2DKV A;  1HDL A;  3SGB I;  1YU6 C;  2CWG A;  2N52 A;  2ENN A;  1CT4 I;  1S20 A;  2QQD A;  1OMT A;  4OVO A;  2E73 A;  5E3P A;  3RU0 A;  2DIP A;  2KCX A;  1R0R I;  2OVO A;  1X74 A;  2OD1 A;  4B6D A;  3MEK A;  3QWP A;  1CT0 I;  4DNC A;  2KMR A;  1N13 A;  1Q9B A;  2ELI A;  2ORV A;  3R5C A;  2CJS C;  5JHW C;  2KMO A;  4SGB I;  2ERW A;  2N71 A;  2NU3 I;  1HJA I;  1SGY I;  5FUY A;  1W3S A;  3B4V C;  3OXL A;  1WKX A;  2PQ8 A;  3PDN A;  5FUW A;  2X52 A;  1WGC A;  1UVF A;  2L7X A;  2UVO A;  2W0T A;  1HPT A;  2K9H A;  2WCY A;  4E1R A;  4GI3 C;  1SGD I;  1TBR R;  2KMP A;  2VRW B;  1K7U A;  1AN1 I;  2RC4 A;  2NU4 I;  2ENZ A;  2Y0M A;  3CXL A;  4A24 A;  1TUS A;  5HI7 A;  1FAR A;  1LR9 A;  1PCE A;  2ARP F;  1CHO I;  1SGQ I;  2KMQ A;  3D00 A;  2NU0 I;  2JW6 A;  1NXU A;  3R5B A;  1X4S A;  1WTJ A;  2QQC A;  1H0Z A;  1MJB A;  5J8C A;  5DAE A;  1CSO I;  1R79 A;  1IY5 A;  4HGU A;  2CWF A;  2FNF X;  3GOX A;  1MT1 A;  1U5K A;  2NU1 I;  4UXI A;  3UOE A;  1K7T A;  1TBN A;  2GIV A;  2ODD A;  1M8B A;  5J8F A;  2QQ0 A;  1MJ9 A;  3R5D A;  3HH2 C;  4UXJ A;  5E3R A;  3VE5 A;  3TO6 A;  2SGE I;  1PJU A;  5CCL A;  1BUS A;  2E5R A;  3TO9 A;  4L9M A;  2L8E A;  4JCV E;  1ULK A;  1OYV I;  2V1C C;  1PTQ A;  2YUU A;  1XA6 A;  2DB6 A;  2JZM A;  3E59 A;  4MPI A;  1DS2 I;  1W4R A;  3QTL D;  1ULN A;  2X3T A;  1CGJ I;  3R5A A;  1OVO A;  1FAQ A;  3VDP A;  1TIH A;  7WGA A;  1FY7 A;  3UGL A;  1VDD A;  2A20 A;  2N17 A;  2YQP A;  1IW4 A;  3KY9 A;  2GKV A;  2SGD I;  2P6A C;  1V1H A;  2J87 A;  1UUC A;  1WGT A;  2B0U C;  1P9G A;  1SGP I;  1SGE I;  2WVJ A;  1CT2 I;  2WGC A;  1LR8 A;  1Y1B A;  3SGQ I;  4AML A;  2OU2 A;  3TOB A;  1Z7K B;  2SGF I;  1CE3 A;  1CGI I;  2SGQ I;  2J9R A;  3OXG A;  5FUV A;  5CCM A;  3OVO A;  4WP4 A;  1OMU A;  2QPO A;  2M5X A;  3FC3 A;  2BUS A;  2F3C I;  4FKD A;  3BJI A;  2UZ3 A;  3VDU A;  3OL0 A;  1XBT A; 
#chains in the Genus database with same CATH homology
 1RFH A;  1LR7 A;  3UEY A;  4E1P A;  3UGI A;  1BMO A;  1TUR A;  2B8T A;  1V1I A;  3UFF A;  2GKT I;  1TBO A;  2QQE A;  3SEK C;  1Y1C A;  1KBF A;  1FYB A;  1PPF I;  5EX0 A;  3E2I A;  1SGN I;  1TBQ R;  1XX6 A;  5HQ8 A;  1Y8F A;  1TOT A;  3UGD A;  2JXD A;  1TGS I;  2GKR I;  2V1C A;  2ROW A;  2V53 A;  2XRC A;  2JYY A;  2N1A B;  1IY6 A;  2SGP I;  1DS3 I;  4UXH A;  1YTP A;  1PTR A;  2LUY A;  2ORW A;  3UEJ A;  2GVI A;  3OXF A;  1UVG A;  1M8C A;  1KMA A;  3TJQ A;  1KBE A;  2NU2 I;  5FUX A;  1SGR I;  2JA1 A;  2LEO A;  5EX3 A;  1NUB A;  1HDL A;  3SGB I;  1YU6 C;  2N52 A;  2ENN A;  1CT4 I;  2QQD A;  1OMT A;  4OVO A;  2E73 A;  3RU0 A;  2DIP A;  2KCX A;  1R0R I;  2OVO A;  1X74 A;  2OD1 A;  4B6D A;  3MEK A;  3QWP A;  1CT0 I;  5JHW C;  2KMR A;  1N13 A;  2ELI A;  2ORV A;  2CJS C;  2KMO A;  4SGB I;  2ERW A;  2N71 A;  2NU3 I;  1HJA I;  1SGY I;  5FUY A;  1W3S A;  3B4V C;  3OXL A;  3PDN A;  5FUW A;  1UVF A;  2L7X A;  2W0T A;  2WCY A;  1HPT A;  2K9H A;  4E1R A;  4GI3 C;  1SGD I;  1TBR R;  2KMP A;  2VRW B;  3OL0 A;  1AN1 I;  3CXL A;  2NU4 I;  2ENZ A;  4A24 A;  1TUS A;  5HI7 A;  1LR9 A;  1FAR A;  1PCE A;  2ARP F;  1CHO I;  1SGQ I;  2KMQ A;  3D00 A;  2NU0 I;  2JW6 A;  1X4S A;  2QQC A;  1H0Z A;  5DAE A;  1CSO I;  1R79 A;  1IY5 A;  4HGU A;  2FNF X;  1MT1 A;  1U5K A;  2NU1 I;  4UXI A;  3GOX A;  1TBN A;  2ODD A;  1M8B A;  2QQ0 A;  4UXJ A;  3VE5 A;  3HH2 C;  2SGE I;  1PJU A;  5CCL A;  1BUS A;  2E5R A;  4L9M A;  2L8E A;  4JCV E;  1OYV I;  2V1C C;  2YUU A;  1PTQ A;  1XA6 A;  2DB6 A;  2JZM A;  3E59 A;  1DS2 I;  1W4R A;  3QTL D;  1CGJ I;  1OVO A;  1FAQ A;  3VDP A;  1TIH A;  3UGL A;  1VDD A;  2A20 A;  2N17 A;  2YQP A;  1IW4 A;  3KY9 A;  2GKV A;  2SGD I;  2P6A C;  1V1H A;  2J87 A;  1UUC A;  2B0U C;  1SGP I;  2WVJ A;  1SGE I;  3SGQ I;  1CT2 I;  1LR8 A;  1Y1B A;  1CE3 A;  1Z7K B;  2SGF I;  1CGI I;  2SGQ I;  2J9R A;  3OXG A;  5FUV A;  5CCM A;  3OVO A;  1OMU A;  2QPO A;  2M5X A;  3FC3 A;  2BUS A;  2F3C I;  4FKD A;  3BJI A;  2UZ3 A;  3VDU A;  1XBT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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