2JXDA

Nmr structure of human serine protease inhibitor kazal type ii (spink2)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
62
structure length
62
Chain Sequence
PQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Serine protease inhibitor Kazal-type 2
publication title Identification of trypsin-inhibitory site and structure determination of human SPINK2 serine proteinase inhibitor
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase inhibitor
total genus 9
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 2007-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2jxdA00
2NU1I 1CHOI 2V53A 1TURA 1AN1I 1DS2I 2NU4I 2JYYA 1TBRR 1CT2I 1OMTA 3SGQI 1HJAI 4HGUA 2SGQI 1Y1CA 3B4VC 1LR7A 2NU3I 2F3CI 2KMOA 1FYBA 2JXDA 1UVFA 1SGPI 1MT1A 3SGBI 1TIHA 1BUSA 1LR8A 2SGDI 1N13A 2GKVA 2JZMA 1M8CA 2KCXA 1PCEA 1HDLA 1SGEI 3OVOA 2N17A 1CGJI 1IY6A 1HPTA 1LR9A 4OVOA 2KMPA 1CT4I 2KMRA 2GKTI 2M5XA 1SGQI 1M8BA 3QTLD 3TJQA 3HH2C 1CE3A 2ARPF 1SGDI 2ERWA 1OMUA 1PPFI 1UUCA 1TBQR 2BUSA 2LEOA 2QQCA 4SGBI 2XRCA 1BMOA 1IW4A 1Y1BA 1OYVI 1CT0I 1CSOI 2SGPI 1R0RI 1SGRI 4GI3C 2SGFI 2NU0I 1OVOA 1KMAA 1TUSA 1PJUA 1DS3I 1TGSI 2KMQA 2NU2I 1SGNI 2OVOA 5JHWC 2GKRI 1UVGA 1H0ZA 3SEKC 2SGEI 1YU6C 1NUBA 2B0UC 2WCYA 2N71A 2P6AC 1CGII 2N52A 1Z7KB 2QQDA 1YTPA 1IY5A 1SGYI 5DAEA
chains in the Genus database with same CATH superfamily
1P9ZA 1P9GA 2NU1I 5E3QA 3TO6A 1CHOI 3QWPA 2V53A 1TURA 1IY5A 1AN1I 1FAQA 1K7UA 1DS2I 2NU4I 1XBTA 2JYYA 1MJBA 1TBRR 3BJIA 3VDUA 1CT2I 2V1CC 1OMTA 3OXLA 1K7VA 3SGQI 3UGDA 1HJAI 4HGUA 1FY7A 2SGQI 5CCLA 1MJAA 2LUYA 2CWHA 2LB7A 1Y1CA 2ODDA 3B4VC 1LR7A 2NU3I 3E59A 2F3CI 3OXGA 2KMOA 3GOXA 2JXDA 1FYBA 3R5BA 1UVFA 2E73A 1SGPI 2OZUA 2VRWB 2J87A 1MJ9A 3UEJA 4B6DA 1MT1A 5HQ8A 3SGBI 1TIHA 3UFFA 1W3SA 1TBOA 3FC3A 1K7TA 1W4RA 1WKXA 1LR8A 5EX3A 1BUSA 5J8FA 2SGDI 3PDNA 2QPOA 4E1RA 3KY9A 2WVJA 1N13A 4E1PA 2GKVA 1XA6A 2JZMA 3FSYA 3E2IA 1M8CA 2KCXA 1PCEA 1TBNA 2OU2A 9WGAA 1HDLA 1SGEI 3OVOA 3R5AA 2L7XA 2N17A 3TOBA 2J9RA 1CGJI 3UEYA 3VDPA 2ENZA 1X4SA 1IY6A 1VDDA 3QAHA 1HPTA 1LR9A 2UZ3A 4DNCA 4OVOA 2KMPA 2Y0MA 3MEKA 1CT4I 2ELIA 4JCVE 2FNFX 2ENNA 2KMRA 1WGTA 2GKTI 2CWGA 2DB6A 2M5XA 3R5DA 4UXJA 2QQEA 5FUVA 4FKDA 1SGQI 1M8BA 2ORWA 1Q9BA 3QTLD 3VE5A 1X74A 2YQPA 2YUUA 3TJQA 4AMLA 3D00A 3HH2C 5J8CA 2ARPF 2N1AB 3UGLA 1CE3A 3TOAA 3RU0A 1SGDI 2GIVA 1ULKA 1PTRA 1OMUA 2ERWA 1PPFI 2CJSC 2GVIA 4A24A 1UUCA 2CWFA 1TBQR 1PTQA 3CXLA 3OL0A 2BUSA 2WGCA 1KBFA 2ROWA 1V1IA 2LEOA 2QQCA 2V1CA 4SGBI 2XRCA 1BMOA 5HI7A 1IW4A 1S20A 1Y1BA 5FUWA 1OYVI 1CT0I 1TOTA 1V1HA 1CSOI 2SGPI 3UGIA 2RIJA 4L9MA 2X52A 1WTJA 2QQ0A 2X3TA 2A20A 3TO9A 1R0RI 5FUXA 1SGRI 2JA1A 4GI3C 2SGFI 2NU0I 1OVOA 7WGAA 1KMAA 1ULMA 1TUSA 2PQ8A 1ULNA 1PJUA 4MPIA 4WP4A 1DS3I 1UHAA 2B8TA 1TGSI 5E3RA 2KMQA 5FUYA 2NU2I 1FARA 1SGNI 2ORVA 2OVOA 2UVOA 5JHWC 5E3PA 2GKRI 2K9HA 1UVGA 5EX0A 1H0ZA 3TO7A 5CCMA 1HEVA 2W0TA 1Z2IA 1XX6A 3SEKC 2SGEI 2L8EA 1YU6C 1KBEA 1NUBA 1U5KA 2E5RA 3UOEA 2DIPA 2B0UC 1NXUA 2WCYA 2DKVA 2N71A 2OD1A 2P6AC 1CGII 2N52A 4UXIA 1Y8FA 1WGCA 2RC4A 3OXFA 2JW6A 3R5CA 1Z7KB 2QQDA 1YTPA 4UXHA 1SGYI 1RFHA 5DAEA 1R79A 3FSXA
chains in the Genus database with same CATH topology
2NU1I 1CHOI 3QWPA 2V53A 1TURA 1IY5A 1AN1I 1FAQA 1DS2I 2NU4I 1XBTA 2JYYA 1TBRR 3BJIA 3VDUA 1CT2I 2V1CC 1OMTA 3OXLA 3SGQI 3UGDA 1HJAI 4HGUA 5CCLA 2SGQI 2LUYA 2ODDA 1Y1CA 3B4VC 1LR7A 2NU3I 3E59A 2F3CI 3OXGA 2KMOA 3GOXA 2JXDA 1FYBA 1UVFA 2E73A 1SGPI 2VRWB 2J87A 3UEJA 4B6DA 1MT1A 5HQ8A 3SGBI 1TIHA 3UFFA 1W3SA 1TBOA 3FC3A 1W4RA 5EX3A 1LR8A 1BUSA 2SGDI 3PDNA 2QPOA 4E1RA 3KY9A 2WVJA 1N13A 4E1PA 2GKVA 1XA6A 2JZMA 3E2IA 1M8CA 2KCXA 1PCEA 1TBNA 1HDLA 1SGEI 3OVOA 2L7XA 2N17A 2J9RA 1CGJI 3UEYA 3VDPA 2ENZA 1X4SA 1IY6A 1VDDA 1HPTA 1LR9A 2UZ3A 4OVOA 2KMPA 3MEKA 1CT4I 2ELIA 4JCVE 2FNFX 2ENNA 2KMRA 2GKTI 2M5XA 2DB6A 4UXJA 2QQEA 5FUVA 4FKDA 1SGQI 1M8BA 2ORWA 3QTLD 3VE5A 1X74A 2YQPA 2YUUA 3TJQA 3D00A 3HH2C 1CE3A 2ARPF 2N1AB 3UGLA 3RU0A 1SGDI 1PTRA 1OMUA 2ERWA 1PPFI 2CJSC 2GVIA 4A24A 1UUCA 1TBQR 1PTQA 3CXLA 3OL0A 2BUSA 1KBFA 2ROWA 1V1IA 2LEOA 2QQCA 2V1CA 4SGBI 2XRCA 1BMOA 5HI7A 1IW4A 1Y1BA 5FUWA 1OYVI 1CT0I 1TOTA 1V1HA 1CSOI 2SGPI 3UGIA 4L9MA 2QQ0A 2A20A 1R0RI 5FUXA 1SGRI 2JA1A 4GI3C 2SGFI 2NU0I 1OVOA 1KMAA 1TUSA 1PJUA 1DS3I 2B8TA 1TGSI 2KMQA 5FUYA 2NU2I 1FARA 1SGNI 2ORVA 2OVOA 5JHWC 2GKRI 2K9HA 1UVGA 5EX0A 1H0ZA 5CCMA 2W0TA 1XX6A 3SEKC 2SGEI 2L8EA 1YU6C 1KBEA 1NUBA 1U5KA 2E5RA 2DIPA 2B0UC 2WCYA 2N71A 2OD1A 2P6AC 1CGII 2N52A 4UXIA 1Y8FA 3OXFA 2JW6A 1Z7KB 2QQDA 1YTPA 4UXHA 1SGYI 1RFHA 5DAEA 1R79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NU1 I;  1CHO I;  2V53 A;  1TUR A;  1AN1 I;  1DS2 I;  2NU4 I;  2JYY A;  1TBR R;  1CT2 I;  1OMT A;  3SGQ I;  1HJA I;  4HGU A;  2SGQ I;  1Y1C A;  3B4V C;  1LR7 A;  2NU3 I;  2F3C I;  2KMO A;  1FYB A;  2JXD A;  1UVF A;  1SGP I;  1MT1 A;  3SGB I;  1TIH A;  1BUS A;  1LR8 A;  2SGD I;  1N13 A;  2GKV A;  2JZM A;  1M8C A;  2KCX A;  1PCE A;  1HDL A;  1SGE I;  3OVO A;  2N17 A;  1CGJ I;  1IY6 A;  1HPT A;  1LR9 A;  4OVO A;  2KMP A;  1CT4 I;  2KMR A;  2GKT I;  2M5X A;  1SGQ I;  1M8B A;  3QTL D;  3TJQ A;  3HH2 C;  1CE3 A;  2ARP F;  1SGD I;  2ERW A;  1OMU A;  1PPF I;  1UUC A;  1TBQ R;  2BUS A;  2LEO A;  2QQC A;  4SGB I;  2XRC A;  1BMO A;  1IW4 A;  1Y1B A;  1OYV I;  1CT0 I;  1CSO I;  2SGP I;  1R0R I;  1SGR I;  4GI3 C;  2SGF I;  2NU0 I;  1OVO A;  1KMA A;  1TUS A;  1PJU A;  1DS3 I;  1TGS I;  2KMQ A;  2NU2 I;  1SGN I;  2OVO A;  5JHW C;  2GKR I;  1UVG A;  1H0Z A;  3SEK C;  2SGE I;  1YU6 C;  1NUB A;  2B0U C;  2WCY A;  2N71 A;  2P6A C;  1CGI I;  2N52 A;  1Z7K B;  2QQD A;  1YTP A;  1IY5 A;  1SGY I;  5DAE A; 
#chains in the Genus database with same CATH topology
 1P9Z A;  1P9G A;  2NU1 I;  5E3Q A;  3TO6 A;  1CHO I;  3QWP A;  2V53 A;  1TUR A;  1IY5 A;  1AN1 I;  1FAQ A;  1K7U A;  1DS2 I;  2NU4 I;  1XBT A;  2JYY A;  1MJB A;  1TBR R;  3BJI A;  3VDU A;  1CT2 I;  2V1C C;  1OMT A;  3OXL A;  1K7V A;  3SGQ I;  3UGD A;  1HJA I;  4HGU A;  1FY7 A;  2SGQ I;  5CCL A;  1MJA A;  2LUY A;  2CWH A;  2LB7 A;  1Y1C A;  2ODD A;  3B4V C;  1LR7 A;  2NU3 I;  3E59 A;  2F3C I;  3OXG A;  2KMO A;  3GOX A;  2JXD A;  1FYB A;  3R5B A;  1UVF A;  2E73 A;  1SGP I;  2OZU A;  2VRW B;  2J87 A;  1MJ9 A;  3UEJ A;  4B6D A;  1MT1 A;  5HQ8 A;  3SGB I;  1TIH A;  3UFF A;  1W3S A;  1TBO A;  3FC3 A;  1K7T A;  1W4R A;  1WKX A;  1LR8 A;  5EX3 A;  1BUS A;  5J8F A;  2SGD I;  3PDN A;  2QPO A;  4E1R A;  3KY9 A;  2WVJ A;  1N13 A;  4E1P A;  2GKV A;  1XA6 A;  2JZM A;  3FSY A;  3E2I A;  1M8C A;  2KCX A;  1PCE A;  1TBN A;  2OU2 A;  9WGA A;  1HDL A;  1SGE I;  3OVO A;  3R5A A;  2L7X A;  2N17 A;  3TOB A;  2J9R A;  1CGJ I;  3UEY A;  3VDP A;  2ENZ A;  1X4S A;  1IY6 A;  1VDD A;  3QAH A;  1HPT A;  1LR9 A;  2UZ3 A;  4DNC A;  4OVO A;  2KMP A;  2Y0M A;  3MEK A;  1CT4 I;  2ELI A;  4JCV E;  2FNF X;  2ENN A;  2KMR A;  1WGT A;  2GKT I;  2CWG A;  2DB6 A;  2M5X A;  3R5D A;  4UXJ A;  2QQE A;  5FUV A;  4FKD A;  1SGQ I;  1M8B A;  2ORW A;  1Q9B A;  3QTL D;  3VE5 A;  1X74 A;  2YQP A;  2YUU A;  3TJQ A;  4AML A;  3D00 A;  3HH2 C;  5J8C A;  2ARP F;  2N1A B;  3UGL A;  1CE3 A;  3TOA A;  3RU0 A;  1SGD I;  2GIV A;  1ULK A;  1PTR A;  1OMU A;  2ERW A;  1PPF I;  2CJS C;  2GVI A;  4A24 A;  1UUC A;  2CWF A;  1TBQ R;  1PTQ A;  3CXL A;  3OL0 A;  2BUS A;  2WGC A;  1KBF A;  2ROW A;  1V1I A;  2LEO A;  2QQC A;  2V1C A;  4SGB I;  2XRC A;  1BMO A;  5HI7 A;  1IW4 A;  1S20 A;  1Y1B A;  5FUW A;  1OYV I;  1CT0 I;  1TOT A;  1V1H A;  1CSO I;  2SGP I;  3UGI A;  2RIJ A;  4L9M A;  2X52 A;  1WTJ A;  2QQ0 A;  2X3T A;  2A20 A;  3TO9 A;  1R0R I;  5FUX A;  1SGR I;  2JA1 A;  4GI3 C;  2SGF I;  2NU0 I;  1OVO A;  7WGA A;  1KMA A;  1ULM A;  1TUS A;  2PQ8 A;  1ULN A;  1PJU A;  4MPI A;  4WP4 A;  1DS3 I;  1UHA A;  2B8T A;  1TGS I;  5E3R A;  2KMQ A;  5FUY A;  2NU2 I;  1FAR A;  1SGN I;  2ORV A;  2OVO A;  2UVO A;  5JHW C;  5E3P A;  2GKR I;  2K9H A;  1UVG A;  5EX0 A;  1H0Z A;  3TO7 A;  5CCM A;  1HEV A;  2W0T A;  1Z2I A;  1XX6 A;  3SEK C;  2SGE I;  2L8E A;  1YU6 C;  1KBE A;  1NUB A;  1U5K A;  2E5R A;  3UOE A;  2DIP A;  2B0U C;  1NXU A;  2WCY A;  2DKV A;  2N71 A;  2OD1 A;  2P6A C;  1CGI I;  2N52 A;  4UXI A;  1Y8F A;  1WGC A;  2RC4 A;  3OXF A;  2JW6 A;  3R5C A;  1Z7K B;  2QQD A;  1YTP A;  4UXH A;  1SGY I;  1RFH A;  5DAE A;  1R79 A;  3FSX A; 
#chains in the Genus database with same CATH homology
 2NU1 I;  1CHO I;  3QWP A;  2V53 A;  1TUR A;  1IY5 A;  1AN1 I;  1FAQ A;  1DS2 I;  2NU4 I;  1XBT A;  2JYY A;  1TBR R;  3BJI A;  3VDU A;  1CT2 I;  2V1C C;  1OMT A;  3OXL A;  3SGQ I;  3UGD A;  1HJA I;  4HGU A;  5CCL A;  2SGQ I;  2LUY A;  2ODD A;  1Y1C A;  3B4V C;  1LR7 A;  2NU3 I;  3E59 A;  2F3C I;  3OXG A;  2KMO A;  3GOX A;  2JXD A;  1FYB A;  1UVF A;  2E73 A;  1SGP I;  2VRW B;  2J87 A;  3UEJ A;  4B6D A;  1MT1 A;  5HQ8 A;  3SGB I;  1TIH A;  3UFF A;  1W3S A;  1TBO A;  3FC3 A;  1W4R A;  5EX3 A;  1LR8 A;  1BUS A;  2SGD I;  3PDN A;  2QPO A;  4E1R A;  3KY9 A;  2WVJ A;  1N13 A;  4E1P A;  2GKV A;  1XA6 A;  2JZM A;  3E2I A;  1M8C A;  2KCX A;  1PCE A;  1TBN A;  1HDL A;  1SGE I;  3OVO A;  2L7X A;  2N17 A;  2J9R A;  1CGJ I;  3UEY A;  3VDP A;  2ENZ A;  1X4S A;  1IY6 A;  1VDD A;  1HPT A;  1LR9 A;  2UZ3 A;  4OVO A;  2KMP A;  3MEK A;  1CT4 I;  2ELI A;  4JCV E;  2FNF X;  2ENN A;  2KMR A;  2GKT I;  2M5X A;  2DB6 A;  4UXJ A;  2QQE A;  5FUV A;  4FKD A;  1SGQ I;  1M8B A;  2ORW A;  3QTL D;  3VE5 A;  1X74 A;  2YQP A;  2YUU A;  3TJQ A;  3D00 A;  3HH2 C;  1CE3 A;  2ARP F;  2N1A B;  3UGL A;  3RU0 A;  1SGD I;  1PTR A;  1OMU A;  2ERW A;  1PPF I;  2CJS C;  2GVI A;  4A24 A;  1UUC A;  1TBQ R;  1PTQ A;  3CXL A;  3OL0 A;  2BUS A;  1KBF A;  2ROW A;  1V1I A;  2LEO A;  2QQC A;  2V1C A;  4SGB I;  2XRC A;  1BMO A;  5HI7 A;  1IW4 A;  1Y1B A;  5FUW A;  1OYV I;  1CT0 I;  1TOT A;  1V1H A;  1CSO I;  2SGP I;  3UGI A;  4L9M A;  2QQ0 A;  2A20 A;  1R0R I;  5FUX A;  1SGR I;  2JA1 A;  4GI3 C;  2SGF I;  2NU0 I;  1OVO A;  1KMA A;  1TUS A;  1PJU A;  1DS3 I;  2B8T A;  1TGS I;  2KMQ A;  5FUY A;  2NU2 I;  1FAR A;  1SGN I;  2ORV A;  2OVO A;  5JHW C;  2GKR I;  2K9H A;  1UVG A;  5EX0 A;  1H0Z A;  5CCM A;  2W0T A;  1XX6 A;  3SEK C;  2SGE I;  2L8E A;  1YU6 C;  1KBE A;  1NUB A;  1U5K A;  2E5R A;  2DIP A;  2B0U C;  2WCY A;  2N71 A;  2OD1 A;  2P6A C;  1CGI I;  2N52 A;  4UXI A;  1Y8F A;  3OXF A;  2JW6 A;  1Z7K B;  2QQD A;  1YTP A;  4UXH A;  1SGY I;  1RFH A;  5DAE A;  1R79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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