1OMTA

Solution structure of ovomucoid (third domain) from domestic turkey (298k, ph 4.1) (nmr, 50 structures) (standard noesy analysis)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
56
structure length
56
Chain Sequence
LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data.
pubmed rcsb
molecule tags Serine proteinase inhibitor
molecule keywords OVOMUCOID (THIRD DOMAIN)
total genus 8
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 1995-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1omtA00
4HGUA 3SEKC 1TUSA 2LEOA 1IY6A 3B4VC 1SGYI 4OVOA 1SGDI 1TGSI 1YU6C 1SGNI 1LR7A 1LR9A 1R0RI 1Y1BA 1TIHA 2SGDI 2M5XA 1DS3I 1BUSA 1Z7KB 1OMTA 1TBRR 1Y1CA 2P6AC 1CGJI 1FYBA 2KMQA 2SGPI 1SGRI 3TJQA 1M8CA 1SGQI 1KMAA 2KCXA 1M8BA 1PPFI 2GKTI 1MT1A 2N17A 1CSOI 5JHWC 3QTLD 1IW4A 1N13A 2ERWA 1TBQR 1CT0I 2ARPF 1CHOI 2SGEI 1SGEI 2QQCA 1UUCA 2F3CI 2OVOA 1IY5A 2SGQI 3HH2C 1OYVI 1HJAI 2WCYA 2GKVA 1CE3A 1AN1I 3OVOA 1H0ZA 1DS2I 1LR8A 2KMRA 1CT2I 1SGPI 2KMPA 1NUBA 2JXDA 2NU1I 5DAEA 2N52A 1HDLA 1HPTA 1CGII 2B0UC 2NU3I 4GI3C 2GKRI 3SGBI 1UVGA 2V53A 1OVOA 2N71A 1PCEA 2XRCA 1PJUA 1UVFA 2SGFI 2NU4I 1TURA 2QQDA 1BMOA 1CT4I 3SGQI 1YTPA 2JYYA 2NU2I 2JZMA 2BUSA 2KMOA 1OMUA 2NU0I 4SGBI
chains in the Genus database with same CATH superfamily
4HGUA 1WGCA 2ENNA 1W4RA 3R5AA 3SEKC 5J8FA 1TUSA 1TBOA 2LEOA 3UGDA 3D00A 2PQ8A 1P9GA 1S20A 2L7XA 2CJSC 2GVIA 1Z2IA 5FUVA 3VDUA 2RIJA 1MJAA 1SGYI 2GIVA 3B4VC 4OVOA 1IY6A 1PTRA 1SGDI 1KBFA 1TGSI 1YU6C 1SGNI 2OZUA 2QPOA 1LR7A 5E3PA 1LR9A 1K7VA 1R0RI 1Y1BA 1TIHA 5E3RA 3VDPA 2SGDI 1U5KA 5CCLA 2LB7A 2M5XA 5HI7A 5FUWA 3E2IA 3KY9A 2FNFX 1DS3I 3FSYA 4E1RA 2OD1A 1BUSA 1K7UA 2E5RA 4L9MA 2LUYA 4WP4A 2ELIA 1VDDA 1Z7KB 1Y8FA 1OMTA 1TBRR 4MPIA 4UXHA 3FC3A 2DKVA 2OU2A 1WTJA 1Y1CA 4FKDA 1V1HA 2P6AC 4E1PA 1CGJI 3QAHA 1FYBA 2KMQA 5E3QA 2SGPI 1SGRI 4SGBI 3TJQA 1X74A 3VE5A 1RFHA 5J8CA 1M8CA 1SGQI 2A20A 1KMAA 3OL0A 1KBEA 2KCXA 1M8BA 1PPFI 3QWPA 4DNCA 2GKTI 1MT1A 2N17A 1CSOI 3OXFA 2ROWA 5JHWC 2VRWB 3QTLD 1PTQA 2QQEA 2CWHA 3RU0A 1IW4A 1N13A 2ERWA 1UHAA 1TBQR 2ENZA 1CT0I 1MJ9A 1XX6A 2ARPF 2J87A 3E59A 4A24A 2ORVA 2W0TA 3TO6A 2L8EA 3UOEA 3R5DA 7WGAA 1CHOI 2SGEI 1SGEI 2QQCA 4B6DA 1UUCA 2F3CI 3TO9A 3OXGA 2OVOA 1IY5A 1K7TA 1WKXA 2SGQI 2V1CA 1WGTA 1TOTA 1Q9BA 1OYVI 2YQPA 2J9RA 3HH2C 3PDNA 1HJAI 2CWGA 2WCYA 2GKVA 1CE3A 1AN1I 3OVOA 5CCMA 2JA1A 1H0ZA 1W3SA 1DS2I 1LR8A 2ORWA 3FSXA 2KMRA 3TO7A 1CT2I 1SGPI 2DB6A 5FUXA 2KMPA 2QQ0A 1NUBA 2WGCA 2X52A 3MEKA 2JXDA 2RC4A 2NU1I 3UGLA 1NXUA 2DIPA 4UXIA 5DAEA 5FUYA 3TOBA 3UFFA 5HQ8A 2N52A 3GOXA 1ULMA 3R5CA 1HDLA 1MJBA 2E73A 4UXJA 1HEVA 2B8TA 2K9HA 1HPTA 3BJIA 5EX0A 1CGII 2B0UC 2WVJA 2NU3I 4GI3C 1XA6A 2GKRI 3TOAA 3SGBI 1UVGA 1XBTA 2V53A 1FY7A 1OVOA 1ULNA 2N1AB 1V1IA 2N71A 1PCEA 3UGIA 2XRCA 3CXLA 1PJUA 2UVOA 1UVFA 2Y0MA 2YUUA 2UZ3A 1R79A 1TBNA 2JW6A 1X4SA 2NU4I 2ODDA 2SGFI 3UEJA 3R5BA 1TURA 2CWFA 9WGAA 2QQDA 1P9ZA 1BMOA 2X3TA 1CT4I 3SGQI 3UEYA 1YTPA 2JYYA 2NU2I 1FARA 1ULKA 4AMLA 5EX3A 2V1CC 1FAQA 3OXLA 2JZMA 2BUSA 2KMOA 1OMUA 2NU0I 4JCVE
chains in the Genus database with same CATH topology
4HGUA 2ENNA 1W4RA 3SEKC 1TUSA 1TBOA 2LEOA 3UGDA 3D00A 2L7XA 5FUVA 2CJSC 2GVIA 3VDUA 1IY6A 3B4VC 1SGYI 4OVOA 1PTRA 1SGDI 1KBFA 1TGSI 1YU6C 1SGNI 2QPOA 1LR7A 1LR9A 1R0RI 1Y1BA 1TIHA 3VDPA 5CCLA 2SGDI 1U5KA 2M5XA 5HI7A 5FUWA 3E2IA 3KY9A 2FNFX 1DS3I 4E1RA 2OD1A 1BUSA 2E5RA 4L9MA 2LUYA 2ELIA 1VDDA 1Z7KB 1Y8FA 1OMTA 1TBRR 3FC3A 4UXHA 1Y1CA 4FKDA 1V1HA 2P6AC 4E1PA 1CGJI 1FYBA 2KMQA 2SGPI 1SGRI 4SGBI 3TJQA 1X74A 3VE5A 1RFHA 1M8CA 1SGQI 2A20A 1KMAA 3OL0A 1KBEA 2KCXA 1M8BA 1PPFI 3QWPA 2GKTI 1MT1A 2N17A 1CSOI 3OXFA 2ROWA 5JHWC 2VRWB 3QTLD 1PTQA 2QQEA 3RU0A 1IW4A 1N13A 2ERWA 1TBQR 2ENZA 1CT0I 3E59A 1XX6A 2ARPF 2J87A 4A24A 2ORVA 2W0TA 2L8EA 1CHOI 2SGEI 1SGEI 2QQCA 4B6DA 1UUCA 2F3CI 3OXGA 2OVOA 1IY5A 2V1CA 2SGQI 1TOTA 2YQPA 1OYVI 3HH2C 2J9RA 3PDNA 1HJAI 2WCYA 2GKVA 1CE3A 1AN1I 3OVOA 5CCMA 2JA1A 1H0ZA 1W3SA 1DS2I 1LR8A 2ORWA 2KMRA 1CT2I 1SGPI 2DB6A 5FUXA 2KMPA 2QQ0A 1NUBA 3MEKA 2JXDA 2NU1I 3UGLA 2DIPA 4UXIA 5DAEA 5FUYA 3UFFA 5HQ8A 2N52A 3GOXA 1HDLA 2E73A 4UXJA 2B8TA 2K9HA 1HPTA 3BJIA 5EX0A 1CGII 2B0UC 2WVJA 2NU3I 4GI3C 1XA6A 2GKRI 3SGBI 1UVGA 1XBTA 2V53A 1OVOA 2N1AB 1V1IA 2N71A 1PCEA 3UGIA 2XRCA 3CXLA 1PJUA 1UVFA 2YUUA 2UZ3A 1R79A 1TBNA 2JW6A 1X4SA 2NU4I 2ODDA 2SGFI 3UEJA 1TURA 2QQDA 1BMOA 3UEYA 1CT4I 3SGQI 1YTPA 2JYYA 2NU2I 1FARA 5EX3A 2V1CC 1FAQA 3OXLA 2JZMA 2BUSA 2KMOA 1OMUA 2NU0I 4JCVE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HGU A;  3SEK C;  1TUS A;  2LEO A;  1IY6 A;  3B4V C;  1SGY I;  4OVO A;  1SGD I;  1TGS I;  1YU6 C;  1SGN I;  1LR7 A;  1LR9 A;  1R0R I;  1Y1B A;  1TIH A;  2SGD I;  2M5X A;  1DS3 I;  1BUS A;  1Z7K B;  1OMT A;  1TBR R;  1Y1C A;  2P6A C;  1CGJ I;  1FYB A;  2KMQ A;  2SGP I;  1SGR I;  3TJQ A;  1M8C A;  1SGQ I;  1KMA A;  2KCX A;  1M8B A;  1PPF I;  2GKT I;  1MT1 A;  2N17 A;  1CSO I;  5JHW C;  3QTL D;  1IW4 A;  1N13 A;  2ERW A;  1TBQ R;  1CT0 I;  2ARP F;  1CHO I;  2SGE I;  1SGE I;  2QQC A;  1UUC A;  2F3C I;  2OVO A;  1IY5 A;  2SGQ I;  3HH2 C;  1OYV I;  1HJA I;  2WCY A;  2GKV A;  1CE3 A;  1AN1 I;  3OVO A;  1H0Z A;  1DS2 I;  1LR8 A;  2KMR A;  1CT2 I;  1SGP I;  2KMP A;  1NUB A;  2JXD A;  2NU1 I;  5DAE A;  2N52 A;  1HDL A;  1HPT A;  1CGI I;  2B0U C;  2NU3 I;  4GI3 C;  2GKR I;  3SGB I;  1UVG A;  2V53 A;  1OVO A;  2N71 A;  1PCE A;  2XRC A;  1PJU A;  1UVF A;  2SGF I;  2NU4 I;  1TUR A;  2QQD A;  1BMO A;  1CT4 I;  3SGQ I;  1YTP A;  2JYY A;  2NU2 I;  2JZM A;  2BUS A;  2KMO A;  1OMU A;  2NU0 I;  4SGB I; 
#chains in the Genus database with same CATH topology
 4HGU A;  1WGC A;  2ENN A;  1W4R A;  3R5A A;  3SEK C;  5J8F A;  1TUS A;  1TBO A;  2LEO A;  3UGD A;  3D00 A;  2PQ8 A;  1P9G A;  1S20 A;  2L7X A;  2CJS C;  2GVI A;  1Z2I A;  5FUV A;  3VDU A;  2RIJ A;  1MJA A;  1SGY I;  2GIV A;  3B4V C;  4OVO A;  1IY6 A;  1PTR A;  1SGD I;  1KBF A;  1TGS I;  1YU6 C;  1SGN I;  2OZU A;  2QPO A;  1LR7 A;  5E3P A;  1LR9 A;  1K7V A;  1R0R I;  1Y1B A;  1TIH A;  5E3R A;  3VDP A;  2SGD I;  1U5K A;  5CCL A;  2LB7 A;  2M5X A;  5HI7 A;  5FUW A;  3E2I A;  3KY9 A;  2FNF X;  1DS3 I;  3FSY A;  4E1R A;  2OD1 A;  1BUS A;  1K7U A;  2E5R A;  4L9M A;  2LUY A;  4WP4 A;  2ELI A;  1VDD A;  1Z7K B;  1Y8F A;  1OMT A;  1TBR R;  4MPI A;  4UXH A;  3FC3 A;  2DKV A;  2OU2 A;  1WTJ A;  1Y1C A;  4FKD A;  1V1H A;  2P6A C;  4E1P A;  1CGJ I;  3QAH A;  1FYB A;  2KMQ A;  5E3Q A;  2SGP I;  1SGR I;  4SGB I;  3TJQ A;  1X74 A;  3VE5 A;  1RFH A;  5J8C A;  1M8C A;  1SGQ I;  2A20 A;  1KMA A;  3OL0 A;  1KBE A;  2KCX A;  1M8B A;  1PPF I;  3QWP A;  4DNC A;  2GKT I;  1MT1 A;  2N17 A;  1CSO I;  3OXF A;  2ROW A;  5JHW C;  2VRW B;  3QTL D;  1PTQ A;  2QQE A;  2CWH A;  3RU0 A;  1IW4 A;  1N13 A;  2ERW A;  1UHA A;  1TBQ R;  2ENZ A;  1CT0 I;  1MJ9 A;  1XX6 A;  2ARP F;  2J87 A;  3E59 A;  4A24 A;  2ORV A;  2W0T A;  3TO6 A;  2L8E A;  3UOE A;  3R5D A;  7WGA A;  1CHO I;  2SGE I;  1SGE I;  2QQC A;  4B6D A;  1UUC A;  2F3C I;  3TO9 A;  3OXG A;  2OVO A;  1IY5 A;  1K7T A;  1WKX A;  2SGQ I;  2V1C A;  1WGT A;  1TOT A;  1Q9B A;  1OYV I;  2YQP A;  2J9R A;  3HH2 C;  3PDN A;  1HJA I;  2CWG A;  2WCY A;  2GKV A;  1CE3 A;  1AN1 I;  3OVO A;  5CCM A;  2JA1 A;  1H0Z A;  1W3S A;  1DS2 I;  1LR8 A;  2ORW A;  3FSX A;  2KMR A;  3TO7 A;  1CT2 I;  1SGP I;  2DB6 A;  5FUX A;  2KMP A;  2QQ0 A;  1NUB A;  2WGC A;  2X52 A;  3MEK A;  2JXD A;  2RC4 A;  2NU1 I;  3UGL A;  1NXU A;  2DIP A;  4UXI A;  5DAE A;  5FUY A;  3TOB A;  3UFF A;  5HQ8 A;  2N52 A;  3GOX A;  1ULM A;  3R5C A;  1HDL A;  1MJB A;  2E73 A;  4UXJ A;  1HEV A;  2B8T A;  2K9H A;  1HPT A;  3BJI A;  5EX0 A;  1CGI I;  2B0U C;  2WVJ A;  2NU3 I;  4GI3 C;  1XA6 A;  2GKR I;  3TOA A;  3SGB I;  1UVG A;  1XBT A;  2V53 A;  1FY7 A;  1OVO A;  1ULN A;  2N1A B;  1V1I A;  2N71 A;  1PCE A;  3UGI A;  2XRC A;  3CXL A;  1PJU A;  2UVO A;  1UVF A;  2Y0M A;  2YUU A;  2UZ3 A;  1R79 A;  1TBN A;  2JW6 A;  1X4S A;  2NU4 I;  2ODD A;  2SGF I;  3UEJ A;  3R5B A;  1TUR A;  2CWF A;  9WGA A;  2QQD A;  1P9Z A;  1BMO A;  2X3T A;  1CT4 I;  3SGQ I;  3UEY A;  1YTP A;  2JYY A;  2NU2 I;  1FAR A;  1ULK A;  4AML A;  5EX3 A;  2V1C C;  1FAQ A;  3OXL A;  2JZM A;  2BUS A;  2KMO A;  1OMU A;  2NU0 I;  4JCV E; 
#chains in the Genus database with same CATH homology
 4HGU A;  2ENN A;  1W4R A;  3SEK C;  1TUS A;  1TBO A;  2LEO A;  3UGD A;  3D00 A;  2L7X A;  5FUV A;  2CJS C;  2GVI A;  3VDU A;  1IY6 A;  3B4V C;  1SGY I;  4OVO A;  1PTR A;  1SGD I;  1KBF A;  1TGS I;  1YU6 C;  1SGN I;  2QPO A;  1LR7 A;  1LR9 A;  1R0R I;  1Y1B A;  1TIH A;  3VDP A;  5CCL A;  2SGD I;  1U5K A;  2M5X A;  5HI7 A;  5FUW A;  3E2I A;  3KY9 A;  2FNF X;  1DS3 I;  4E1R A;  2OD1 A;  1BUS A;  2E5R A;  4L9M A;  2LUY A;  2ELI A;  1VDD A;  1Z7K B;  1Y8F A;  1OMT A;  1TBR R;  3FC3 A;  4UXH A;  1Y1C A;  4FKD A;  1V1H A;  2P6A C;  4E1P A;  1CGJ I;  1FYB A;  2KMQ A;  2SGP I;  1SGR I;  4SGB I;  3TJQ A;  1X74 A;  3VE5 A;  1RFH A;  1M8C A;  1SGQ I;  2A20 A;  1KMA A;  3OL0 A;  1KBE A;  2KCX A;  1M8B A;  1PPF I;  3QWP A;  2GKT I;  1MT1 A;  2N17 A;  1CSO I;  3OXF A;  2ROW A;  5JHW C;  2VRW B;  3QTL D;  1PTQ A;  2QQE A;  3RU0 A;  1IW4 A;  1N13 A;  2ERW A;  1TBQ R;  2ENZ A;  1CT0 I;  3E59 A;  1XX6 A;  2ARP F;  2J87 A;  4A24 A;  2ORV A;  2W0T A;  2L8E A;  1CHO I;  2SGE I;  1SGE I;  2QQC A;  4B6D A;  1UUC A;  2F3C I;  3OXG A;  2OVO A;  1IY5 A;  2V1C A;  2SGQ I;  1TOT A;  2YQP A;  1OYV I;  3HH2 C;  2J9R A;  3PDN A;  1HJA I;  2WCY A;  2GKV A;  1CE3 A;  1AN1 I;  3OVO A;  5CCM A;  2JA1 A;  1H0Z A;  1W3S A;  1DS2 I;  1LR8 A;  2ORW A;  2KMR A;  1CT2 I;  1SGP I;  2DB6 A;  5FUX A;  2KMP A;  2QQ0 A;  1NUB A;  3MEK A;  2JXD A;  2NU1 I;  3UGL A;  2DIP A;  4UXI A;  5DAE A;  5FUY A;  3UFF A;  5HQ8 A;  2N52 A;  3GOX A;  1HDL A;  2E73 A;  4UXJ A;  2B8T A;  2K9H A;  1HPT A;  3BJI A;  5EX0 A;  1CGI I;  2B0U C;  2WVJ A;  2NU3 I;  4GI3 C;  1XA6 A;  2GKR I;  3SGB I;  1UVG A;  1XBT A;  2V53 A;  1OVO A;  2N1A B;  1V1I A;  2N71 A;  1PCE A;  3UGI A;  2XRC A;  3CXL A;  1PJU A;  1UVF A;  2YUU A;  2UZ3 A;  1R79 A;  1TBN A;  2JW6 A;  1X4S A;  2NU4 I;  2ODD A;  2SGF I;  3UEJ A;  1TUR A;  2QQD A;  1BMO A;  3UEY A;  1CT4 I;  3SGQ I;  1YTP A;  2JYY A;  2NU2 I;  1FAR A;  5EX3 A;  2V1C C;  1FAQ A;  3OXL A;  2JZM A;  2BUS A;  2KMO A;  1OMU A;  2NU0 I;  4JCV E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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