1OMTA

Solution structure of ovomucoid (third domain) from domestic turkey (298k, ph 4.1) (nmr, 50 structures) (standard noesy analysis)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
56
structure length
56
Chain Sequence
LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords OVOMUCOID (THIRD DOMAIN)
publication title Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data.
pubmed rcsb
molecule tags Serine proteinase inhibitor
total genus 8
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 1995-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1omtA00
3TJQA 4SGBI 2M5XA 2WCYA 1SGYI 1CHOI 1AN1I 2ERWA 3SGQI 1UVFA 2XRCA 1R0RI 1CT0I 1CSOI 2NU1I 2JXDA 1TUSA 1SGNI 4HGUA 1OMUA 2KMOA 1TBRR 5DAEA 1Z7KB 1CT2I 2SGFI 2KMQA 5JHWC 1CGJI 2ARPF 2KMRA 1OYVI 1SGPI 1N13A 1SGEI 2QQDA 3QTLD 1YU6C 1SGRI 2KCXA 1TIHA 3SEKC 1PJUA 2SGQI 2NU2I 2F3CI 1TGSI 3HH2C 1TBQR 2QQCA 1LR8A 2N17A 2B0UC 1SGQI 1LR9A 2V53A 1IY6A 1CGII 1PCEA 1M8BA 1UUCA 4GI3C 3B4VC 1LR7A 2NU4I 1UVGA 3SGBI 2P6AC 1IY5A 1MT1A 2OVOA 1DS3I 1CE3A 1Y1CA 1TURA 1DS2I 2GKRI 2KMPA 2SGPI 2JZMA 1KMAA 1BUSA 2BUSA 2SGDI 1HDLA 2NU0I 2GKVA 1IW4A 2JYYA 2LEOA 1HPTA 1FYBA 1HJAI 1OVOA 1NUBA 2GKTI 1BMOA 2NU3I 1SGDI 1CT4I 1Y1BA 2N52A 2N71A 2SGEI 1PPFI 1H0ZA 1OMTA 1YTPA 4OVOA 3OVOA 1M8CA
chains in the Genus database with same CATH superfamily
3TJQA 4SGBI 1MJ9A 2M5XA 4UXIA 2WCYA 1SGYI 1VDDA 2ELIA 4UXJA 1HEVA 2OZUA 1CHOI 1WGCA 1AN1I 2ERWA 3QAHA 4E1RA 1XA6A 3SGQI 1UVFA 2XRCA 1Q9BA 1R0RI 2CWFA 2OU2A 1S20A 1CT0I 1KBEA 1R79A 2RIJA 1CSOI 2ENZA 1WTJA 1X4SA 2K9HA 2NU1I 2Y0MA 2JA1A 2JXDA 1TUSA 1SGNI 2L8EA 4WP4A 5FUYA 3UEYA 1FAQA 4HGUA 1OMUA 3TOAA 2KMOA 1K7VA 1TBRR 3QWPA 5DAEA 1Z7KB 1CT2I 2GIVA 3TOBA 3OL0A 2SGFI 2CWGA 2KMQA 1Y8FA 2DKVA 5JHWC 1CGJI 2ARPF 3R5CA 5E3QA 2KMRA 2V1CC 3BJIA 5HI7A 2CWHA 3R5AA 1OYVI 3TO7A 2LB7A 2W0TA 1SGPI 3UGLA 9WGAA 5CCLA 1FARA 1N13A 3FC3A 2QPOA 1SGEI 1P9GA 2QQDA 1ULMA 2ORWA 4FKDA 5E3RA 2PQ8A 1FY7A 3QTLD 1XBTA 4JCVE 3UEJA 1YU6C 1MJBA 1WKXA 5FUVA 1SGRI 3OXLA 2N1AB 3TO9A 3R5BA 2KCXA 1TIHA 3SEKC 1PJUA 2SGQI 1U5KA 2UZ3A 3GOXA 2NU2I 2F3CI 2YQPA 1TGSI 2QQ0A 3FSXA 3HH2C 1TBQR 2QQCA 2J9RA 4AMLA 2J87A 2V1CA 1P9ZA 5J8FA 1LR8A 1X74A 4MPIA 4UXHA 2N17A 3KY9A 1TBOA 2B0UC 1SGQI 1LR9A 2RC4A 3R5DA 2V53A 2X3TA 1W4RA 5EX3A 1V1IA 1IY6A 1CGII 1PCEA 2LUYA 3UGIA 1M8BA 1UUCA 2X52A 4GI3C 3B4VC 3VDPA 1LR7A 5FUXA 2NU4I 3UGDA 2E5RA 1UVGA 2WVJA 2L7XA 2YUUA 2JW6A 2ROWA 3SGBI 2P6AC 4DNCA 3MEKA 1IY5A 1MT1A 2B8TA 2OVOA 5CCMA 3UFFA 1DS3I 1XX6A 3VDUA 2ODDA 1CE3A 1PTRA 1PTQA 1Y1CA 1TURA 1ULNA 3VE5A 2VRWB 1UHAA 1TOTA 1RFHA 5EX0A 1WGTA 2FNFX 2WGCA 3UOEA 2QQEA 1DS2I 2UVOA 2GKRI 1MJAA 2KMPA 3PDNA 3RU0A 4A24A 4B6DA 5J8CA 1TBNA 2SGPI 4E1PA 2JZMA 1KMAA 1BUSA 2ORVA 3D00A 2BUSA 3E2IA 2GVIA 2SGDI 3OXGA 2DIPA 2NU0I 1HDLA 2GKVA 3FSYA 1IW4A 2JYYA 3CXLA 3E59A 3TO6A 2LEOA 5E3PA 1V1HA 1HPTA 1Z2IA 1FYBA 1HJAI 1OVOA 2A20A 1NUBA 2OD1A 7WGAA 5HQ8A 2GKTI 1BMOA 4L9MA 1W3SA 5FUWA 1SGDI 2NU3I 1CT4I 1K7TA 1Y1BA 2ENNA 2N52A 2N71A 2SGEI 3OXFA 1PPFI 1K7UA 1ULKA 1H0ZA 1OMTA 1YTPA 4OVOA 1KBFA 3OVOA 2DB6A 1NXUA 2E73A 2CJSC 1M8CA
chains in the Genus database with same CATH topology
3TJQA 4SGBI 2M5XA 4UXJA 2WCYA 1SGYI 1VDDA 2ELIA 1CHOI 1AN1I 2ERWA 4E1RA 1XA6A 3SGQI 1UVFA 2XRCA 1R0RI 1CT0I 1KBEA 1R79A 1CSOI 2ENZA 1X4SA 2K9HA 4UXIA 2NU1I 3UGDA 2JA1A 2JXDA 1TUSA 1SGNI 2L8EA 5FUYA 3UEYA 1FAQA 4HGUA 1OMUA 2KMOA 1TBRR 5DAEA 3QWPA 1Z7KB 1CT2I 3OL0A 2SGFI 2KMQA 1Y8FA 5JHWC 1CGJI 2ARPF 2KMRA 2V1CC 3BJIA 5HI7A 1OYVI 2W0TA 1SGPI 3UGLA 5CCLA 1FARA 1N13A 3FC3A 2QPOA 1SGEI 2QQDA 4FKDA 2ORWA 4JCVE 3QTLD 1XBTA 3UEJA 1YU6C 5FUVA 1SGRI 3OXLA 2N1AB 2KCXA 1TIHA 3SEKC 1PJUA 2SGQI 1U5KA 2UZ3A 3GOXA 2NU2I 2F3CI 2YQPA 1TGSI 2QQ0A 3HH2C 1TBQR 2QQCA 2J9RA 2J87A 2V1CA 1LR8A 1X74A 4UXHA 2N17A 3KY9A 1TBOA 2B0UC 1SGQI 1LR9A 2V53A 1W4RA 5EX3A 1V1IA 1IY6A 1CGII 1PCEA 2LUYA 3UGIA 1M8BA 1UUCA 4GI3C 3B4VC 3VDPA 1LR7A 5FUXA 2NU4I 2E5RA 1UVGA 2WVJA 2L7XA 2YUUA 2JW6A 2ROWA 3SGBI 2P6AC 3MEKA 1IY5A 1MT1A 2B8TA 2OVOA 5CCMA 3UFFA 1DS3I 1XX6A 3VDUA 2ODDA 1CE3A 1PTRA 1PTQA 1Y1CA 1TURA 3VE5A 2VRWB 1TOTA 1RFHA 5EX0A 2FNFX 4A24A 2QQEA 1DS2I 2GKRI 3PDNA 2KMPA 3RU0A 4B6DA 1TBNA 2SGPI 4E1PA 2JZMA 1KMAA 1BUSA 2ORVA 3D00A 2BUSA 3E2IA 2GVIA 2SGDI 3OXGA 2DIPA 2NU0I 1HDLA 2GKVA 1IW4A 2JYYA 3CXLA 3E59A 2LEOA 1V1HA 1HPTA 1FYBA 1HJAI 1OVOA 2A20A 1NUBA 2OD1A 5HQ8A 2GKTI 1BMOA 4L9MA 1W3SA 5FUWA 1SGDI 2NU3I 1CT4I 3OXFA 1Y1BA 2ENNA 2N52A 2N71A 2SGEI 1PPFI 1H0ZA 1OMTA 1YTPA 4OVOA 1KBFA 3OVOA 2DB6A 2E73A 2CJSC 1M8CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TJQ A;  4SGB I;  2M5X A;  2WCY A;  1SGY I;  1CHO I;  1AN1 I;  2ERW A;  3SGQ I;  1UVF A;  2XRC A;  1R0R I;  1CT0 I;  1CSO I;  2NU1 I;  2JXD A;  1TUS A;  1SGN I;  4HGU A;  1OMU A;  2KMO A;  1TBR R;  5DAE A;  1Z7K B;  1CT2 I;  2SGF I;  2KMQ A;  5JHW C;  1CGJ I;  2ARP F;  2KMR A;  1OYV I;  1SGP I;  1N13 A;  1SGE I;  2QQD A;  3QTL D;  1YU6 C;  1SGR I;  2KCX A;  1TIH A;  3SEK C;  1PJU A;  2SGQ I;  2NU2 I;  2F3C I;  1TGS I;  3HH2 C;  1TBQ R;  2QQC A;  1LR8 A;  2N17 A;  2B0U C;  1SGQ I;  1LR9 A;  2V53 A;  1IY6 A;  1CGI I;  1PCE A;  1M8B A;  1UUC A;  4GI3 C;  3B4V C;  1LR7 A;  2NU4 I;  1UVG A;  3SGB I;  2P6A C;  1IY5 A;  1MT1 A;  2OVO A;  1DS3 I;  1CE3 A;  1Y1C A;  1TUR A;  1DS2 I;  2GKR I;  2KMP A;  2SGP I;  2JZM A;  1KMA A;  1BUS A;  2BUS A;  2SGD I;  1HDL A;  2NU0 I;  2GKV A;  1IW4 A;  2JYY A;  2LEO A;  1HPT A;  1FYB A;  1HJA I;  1OVO A;  1NUB A;  2GKT I;  1BMO A;  2NU3 I;  1SGD I;  1CT4 I;  1Y1B A;  2N52 A;  2N71 A;  2SGE I;  1PPF I;  1H0Z A;  1OMT A;  1YTP A;  4OVO A;  3OVO A;  1M8C A; 
#chains in the Genus database with same CATH topology
 3TJQ A;  4SGB I;  1MJ9 A;  2M5X A;  4UXI A;  2WCY A;  1SGY I;  1VDD A;  2ELI A;  4UXJ A;  1HEV A;  2OZU A;  1CHO I;  1WGC A;  1AN1 I;  2ERW A;  3QAH A;  4E1R A;  1XA6 A;  3SGQ I;  1UVF A;  2XRC A;  1Q9B A;  1R0R I;  2CWF A;  2OU2 A;  1S20 A;  1CT0 I;  1KBE A;  1R79 A;  2RIJ A;  1CSO I;  2ENZ A;  1WTJ A;  1X4S A;  2K9H A;  2NU1 I;  2Y0M A;  2JA1 A;  2JXD A;  1TUS A;  1SGN I;  2L8E A;  4WP4 A;  5FUY A;  3UEY A;  1FAQ A;  4HGU A;  1OMU A;  3TOA A;  2KMO A;  1K7V A;  1TBR R;  3QWP A;  5DAE A;  1Z7K B;  1CT2 I;  2GIV A;  3TOB A;  3OL0 A;  2SGF I;  2CWG A;  2KMQ A;  1Y8F A;  2DKV A;  5JHW C;  1CGJ I;  2ARP F;  3R5C A;  5E3Q A;  2KMR A;  2V1C C;  3BJI A;  5HI7 A;  2CWH A;  3R5A A;  1OYV I;  3TO7 A;  2LB7 A;  2W0T A;  1SGP I;  3UGL A;  9WGA A;  5CCL A;  1FAR A;  1N13 A;  3FC3 A;  2QPO A;  1SGE I;  1P9G A;  2QQD A;  1ULM A;  2ORW A;  4FKD A;  5E3R A;  2PQ8 A;  1FY7 A;  3QTL D;  1XBT A;  4JCV E;  3UEJ A;  1YU6 C;  1MJB A;  1WKX A;  5FUV A;  1SGR I;  3OXL A;  2N1A B;  3TO9 A;  3R5B A;  2KCX A;  1TIH A;  3SEK C;  1PJU A;  2SGQ I;  1U5K A;  2UZ3 A;  3GOX A;  2NU2 I;  2F3C I;  2YQP A;  1TGS I;  2QQ0 A;  3FSX A;  3HH2 C;  1TBQ R;  2QQC A;  2J9R A;  4AML A;  2J87 A;  2V1C A;  1P9Z A;  5J8F A;  1LR8 A;  1X74 A;  4MPI A;  4UXH A;  2N17 A;  3KY9 A;  1TBO A;  2B0U C;  1SGQ I;  1LR9 A;  2RC4 A;  3R5D A;  2V53 A;  2X3T A;  1W4R A;  5EX3 A;  1V1I A;  1IY6 A;  1CGI I;  1PCE A;  2LUY A;  3UGI A;  1M8B A;  1UUC A;  2X52 A;  4GI3 C;  3B4V C;  3VDP A;  1LR7 A;  5FUX A;  2NU4 I;  3UGD A;  2E5R A;  1UVG A;  2WVJ A;  2L7X A;  2YUU A;  2JW6 A;  2ROW A;  3SGB I;  2P6A C;  4DNC A;  3MEK A;  1IY5 A;  1MT1 A;  2B8T A;  2OVO A;  5CCM A;  3UFF A;  1DS3 I;  1XX6 A;  3VDU A;  2ODD A;  1CE3 A;  1PTR A;  1PTQ A;  1Y1C A;  1TUR A;  1ULN A;  3VE5 A;  2VRW B;  1UHA A;  1TOT A;  1RFH A;  5EX0 A;  1WGT A;  2FNF X;  2WGC A;  3UOE A;  2QQE A;  1DS2 I;  2UVO A;  2GKR I;  1MJA A;  2KMP A;  3PDN A;  3RU0 A;  4A24 A;  4B6D A;  5J8C A;  1TBN A;  2SGP I;  4E1P A;  2JZM A;  1KMA A;  1BUS A;  2ORV A;  3D00 A;  2BUS A;  3E2I A;  2GVI A;  2SGD I;  3OXG A;  2DIP A;  2NU0 I;  1HDL A;  2GKV A;  3FSY A;  1IW4 A;  2JYY A;  3CXL A;  3E59 A;  3TO6 A;  2LEO A;  5E3P A;  1V1H A;  1HPT A;  1Z2I A;  1FYB A;  1HJA I;  1OVO A;  2A20 A;  1NUB A;  2OD1 A;  7WGA A;  5HQ8 A;  2GKT I;  1BMO A;  4L9M A;  1W3S A;  5FUW A;  1SGD I;  2NU3 I;  1CT4 I;  1K7T A;  1Y1B A;  2ENN A;  2N52 A;  2N71 A;  2SGE I;  3OXF A;  1PPF I;  1K7U A;  1ULK A;  1H0Z A;  1OMT A;  1YTP A;  4OVO A;  1KBF A;  3OVO A;  2DB6 A;  1NXU A;  2E73 A;  2CJS C;  1M8C A; 
#chains in the Genus database with same CATH homology
 3TJQ A;  4SGB I;  2M5X A;  4UXJ A;  2WCY A;  1SGY I;  1VDD A;  2ELI A;  1CHO I;  1AN1 I;  2ERW A;  4E1R A;  1XA6 A;  3SGQ I;  1UVF A;  2XRC A;  1R0R I;  1CT0 I;  1KBE A;  1R79 A;  1CSO I;  2ENZ A;  1X4S A;  2K9H A;  4UXI A;  2NU1 I;  3UGD A;  2JA1 A;  2JXD A;  1TUS A;  1SGN I;  2L8E A;  5FUY A;  3UEY A;  1FAQ A;  4HGU A;  1OMU A;  2KMO A;  1TBR R;  5DAE A;  3QWP A;  1Z7K B;  1CT2 I;  3OL0 A;  2SGF I;  2KMQ A;  1Y8F A;  5JHW C;  1CGJ I;  2ARP F;  2KMR A;  2V1C C;  3BJI A;  5HI7 A;  1OYV I;  2W0T A;  1SGP I;  3UGL A;  5CCL A;  1FAR A;  1N13 A;  3FC3 A;  2QPO A;  1SGE I;  2QQD A;  4FKD A;  2ORW A;  4JCV E;  3QTL D;  1XBT A;  3UEJ A;  1YU6 C;  5FUV A;  1SGR I;  3OXL A;  2N1A B;  2KCX A;  1TIH A;  3SEK C;  1PJU A;  2SGQ I;  1U5K A;  2UZ3 A;  3GOX A;  2NU2 I;  2F3C I;  2YQP A;  1TGS I;  2QQ0 A;  3HH2 C;  1TBQ R;  2QQC A;  2J9R A;  2J87 A;  2V1C A;  1LR8 A;  1X74 A;  4UXH A;  2N17 A;  3KY9 A;  1TBO A;  2B0U C;  1SGQ I;  1LR9 A;  2V53 A;  1W4R A;  5EX3 A;  1V1I A;  1IY6 A;  1CGI I;  1PCE A;  2LUY A;  3UGI A;  1M8B A;  1UUC A;  4GI3 C;  3B4V C;  3VDP A;  1LR7 A;  5FUX A;  2NU4 I;  2E5R A;  1UVG A;  2WVJ A;  2L7X A;  2YUU A;  2JW6 A;  2ROW A;  3SGB I;  2P6A C;  3MEK A;  1IY5 A;  1MT1 A;  2B8T A;  2OVO A;  5CCM A;  3UFF A;  1DS3 I;  1XX6 A;  3VDU A;  2ODD A;  1CE3 A;  1PTR A;  1PTQ A;  1Y1C A;  1TUR A;  3VE5 A;  2VRW B;  1TOT A;  1RFH A;  5EX0 A;  2FNF X;  4A24 A;  2QQE A;  1DS2 I;  2GKR I;  3PDN A;  2KMP A;  3RU0 A;  4B6D A;  1TBN A;  2SGP I;  4E1P A;  2JZM A;  1KMA A;  1BUS A;  2ORV A;  3D00 A;  2BUS A;  3E2I A;  2GVI A;  2SGD I;  3OXG A;  2DIP A;  2NU0 I;  1HDL A;  2GKV A;  1IW4 A;  2JYY A;  3CXL A;  3E59 A;  2LEO A;  1V1H A;  1HPT A;  1FYB A;  1HJA I;  1OVO A;  2A20 A;  1NUB A;  2OD1 A;  5HQ8 A;  2GKT I;  1BMO A;  4L9M A;  1W3S A;  5FUW A;  1SGD I;  2NU3 I;  1CT4 I;  3OXF A;  1Y1B A;  2ENN A;  2N52 A;  2N71 A;  2SGE I;  1PPF I;  1H0Z A;  1OMT A;  1YTP A;  4OVO A;  1KBF A;  3OVO A;  2DB6 A;  2E73 A;  2CJS C;  1M8C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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