1OMTA

Solution structure of ovomucoid (third domain) from domestic turkey (298k, ph 4.1) (nmr, 50 structures) (standard noesy analysis)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
56
structure length
56
Chain Sequence
LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Serine proteinase inhibitor
molecule keywords OVOMUCOID (THIRD DOMAIN)
publication title Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data.
pubmed rcsb
total genus 8
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 1995-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1omtA00
1TBRR 1IW4A 2WCYA 1YTPA 1PCEA 2NU3I 2ARPF 2OVOA 2B0UC 1SGYI 2XRCA 2SGDI 1CE3A 1UVGA 4GI3C 1NUBA 2BUSA 1CGJI 1UVFA 2ERWA 2NU0I 1IY6A 2SGQI 1OMTA 1UUCA 2QQCA 1PPFI 1H0ZA 1SGDI 2F3CI 2KCXA 1CT4I 1Y1CA 2LEOA 2SGFI 2KMQA 4SGBI 1CSOI 2N52A 2NU2I 1DS2I 2GKRI 1OYVI 2NU4I 3HH2C 2KMOA 3OVOA 4HGUA 2SGEI 1BUSA 2N17A 1BMOA 1SGPI 2SGPI 1Z7KB 3QTLD 1Y1BA 1TGSI 2JXDA 1SGEI 2N71A 2QQDA 2JYYA 2GKTI 1CHOI 2GKVA 2P6AC 1TUSA 1SGRI 1SGQI 1HJAI 3B4VC 1KMAA 3SGQI 1AN1I 1LR9A 1CGII 1FYBA 2KMPA 5DAEA 3SEKC 1PJUA 1IY5A 1MT1A 5JHWC 1TURA 1CT0I 1M8BA 1N13A 1R0RI 2KMRA 1LR7A 1DS3I 2M5XA 2JZMA 1HDLA 1OVOA 1M8CA 1TBQR 1TIHA 2NU1I 3SGBI 4OVOA 3TJQA 1YU6C 1CT2I 1HPTA 1OMUA 1SGNI 1LR8A 2V53A
chains in the Genus database with same CATH superfamily
1PTQA 1TBRR 1IW4A 2WCYA 1YTPA 1ULKA 2Y0MA 1PCEA 2OD1A 5CCMA 3VDPA 2QPOA 5FUYA 1WGCA 2W0TA 3VDUA 2NU3I 1FAQA 2ARPF 2OVOA 4MPIA 2YQPA 2V1CC 2CWHA 1X74A 2B0UC 2FNFX 2ORVA 2QQEA 1SGYI 2XRCA 1TBOA 4UXJA 5HI7A 2SGDI 2WVJA 3FSYA 5EX0A 3TOBA 4A24A 1CE3A 1UVGA 3RU0A 4GI3C 4L9MA 2ENZA 2B8TA 2L8EA 1NUBA 2BUSA 3R5DA 2CJSC 1CGJI 1K7UA 1NXUA 1UVFA 1V1HA 2LUYA 2RC4A 2ERWA 2JW6A 2ELIA 2NU0I 2LB7A 4E1PA 5E3PA 1H0ZA 2DKVA 1IY6A 2SGQI 1OMTA 1UUCA 1XX6A 1PPFI 2QQCA 1TOTA 1SGDI 2F3CI 1R79A 2KCXA 3QWPA 4JCVE 1CT4I 5FUXA 1Y1CA 2LEOA 2SGFI 2KMQA 1P9GA 1P9ZA 1WGTA 3UFFA 4SGBI 1K7VA 2ROWA 1XA6A 1CSOI 2N52A 2NU2I 2GIVA 1DS2I 2OZUA 2GKRI 5J8FA 2CWFA 1OYVI 2NU4I 3HH2C 2RIJA 2KMOA 3OVOA 3QAHA 3R5AA 1MJ9A 1ULNA 2ODDA 4HGUA 2DIPA 1FARA 2J9RA 5E3RA 3TO6A 2SGEI 2L7XA 1BUSA 2N17A 1BMOA 1SGPI 3OXGA 1UHAA 2ENNA 2SGPI 1W4RA 1Z7KB 2OU2A 3QTLD 1VDDA 2K9HA 2E5RA 1K7TA 1PTRA 3BJIA 1Y1BA 1TGSI 2JXDA 3TO7A 1S20A 1SGEI 2N71A 1U5KA 2QQDA 1X4SA 1WKXA 5FUVA 2GVIA 2UZ3A 4UXHA 7WGAA 3GOXA 2JYYA 2GKTI 3TO9A 1CHOI 2GKVA 1FY7A 2P6AC 1TUSA 2QQ0A 3KY9A 2V1CA 3PDNA 3MEKA 3UGLA 5FUWA 3R5CA 1SGRI 2A20A 1SGQI 3D00A 1HJAI 3B4VC 4WP4A 5CCLA 1KMAA 2N1AB 3SGQI 2E73A 1AN1I 1XBTA 1LR9A 1CGII 2WGCA 2X3TA 2X52A 2KMPA 3CXLA 3OL0A 4B6DA 5J8CA 1FYBA 4FKDA 2JA1A 4E1RA 4AMLA 5DAEA 1MJAA 3R5BA 3SEKC 1Y8FA 1WTJA 1Q9BA 3UOEA 1PJUA 4UXIA 3FC3A 1IY5A 1MT1A 5JHWC 1TBNA 4DNCA 2DB6A 3UGDA 5HQ8A 1TURA 1Z2IA 2VRWB 1CT0I 1M8BA 1N13A 1R0RI 3VE5A 3UEYA 2KMRA 1LR7A 1KBFA 1MJBA 2ORWA 3E2IA 1DS3I 3UGIA 2M5XA 2JZMA 2YUUA 1HDLA 1OVOA 1M8CA 2J87A 3FSXA 3OXFA 1TBQR 3E59A 1TIHA 1KBEA 1W3SA 1ULMA 2NU1I 2UVOA 3SGBI 1V1IA 4OVOA 3TOAA 5EX3A 3OXLA 9WGAA 3TJQA 3UEJA 1YU6C 1CT2I 5E3QA 1HEVA 1RFHA 1HPTA 1OMUA 1SGNI 1LR8A 2PQ8A 2CWGA 2V53A
chains in the Genus database with same CATH topology
1PTQA 1TBRR 1IW4A 2WCYA 1YTPA 1PCEA 2OD1A 5CCMA 3VDPA 2QPOA 5FUYA 2W0TA 3VDUA 2NU3I 1FAQA 2ARPF 2OVOA 2YQPA 2V1CC 1X74A 2B0UC 2FNFX 2ORVA 2QQEA 1SGYI 2XRCA 1TBOA 4UXJA 5HI7A 2SGDI 2WVJA 5EX0A 4A24A 1CE3A 1UVGA 3RU0A 4GI3C 4L9MA 2ENZA 2B8TA 2L8EA 1NUBA 2BUSA 2CJSC 1CGJI 1UVFA 1V1HA 2LUYA 2ERWA 2JW6A 2ELIA 2NU0I 4E1PA 1H0ZA 1IY6A 2SGQI 1OMTA 1UUCA 1XX6A 1PPFI 2QQCA 1TOTA 1SGDI 2F3CI 1R79A 2KCXA 3QWPA 4JCVE 1CT4I 5FUXA 1Y1CA 2LEOA 2SGFI 2KMQA 3UFFA 4SGBI 2ROWA 1XA6A 1CSOI 2N52A 2NU2I 1DS2I 2GKRI 1OYVI 2NU4I 3HH2C 2KMOA 3OVOA 2ODDA 4HGUA 2DIPA 1FARA 2J9RA 2SGEI 2L7XA 1BUSA 2N17A 1BMOA 1SGPI 3OXGA 2ENNA 2SGPI 1W4RA 1Z7KB 3QTLD 1VDDA 2K9HA 2E5RA 1PTRA 3BJIA 1Y1BA 1TGSI 2JXDA 1SGEI 2N71A 1U5KA 2QQDA 1X4SA 5FUVA 3GOXA 2GVIA 2UZ3A 4UXHA 2JYYA 2GKTI 1CHOI 2GKVA 2P6AC 2QQ0A 1TUSA 3KY9A 3PDNA 2V1CA 3UGLA 3MEKA 5FUWA 1SGRI 2A20A 1SGQI 3D00A 1HJAI 3B4VC 5CCLA 1KMAA 2N1AB 3SGQI 2E73A 1AN1I 1XBTA 1LR9A 1CGII 1FYBA 3OL0A 2KMPA 3CXLA 4B6DA 4FKDA 2JA1A 4E1RA 5DAEA 3SEKC 1Y8FA 1PJUA 4UXIA 3FC3A 1IY5A 1MT1A 5JHWC 1TBNA 2DB6A 3UGDA 5HQ8A 1TURA 2VRWB 1CT0I 1M8BA 1N13A 1R0RI 3VE5A 3UEYA 2KMRA 1LR7A 1KBFA 2ORWA 3E2IA 1DS3I 3UGIA 2M5XA 2JZMA 2YUUA 1HDLA 1OVOA 1M8CA 2J87A 3OXFA 1TBQR 3E59A 1TIHA 1KBEA 1W3SA 2NU1I 3SGBI 1V1IA 4OVOA 5EX3A 3OXLA 3TJQA 3UEJA 1YU6C 1CT2I 1RFHA 1HPTA 1OMUA 1SGNI 1LR8A 2V53A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TBR R;  1IW4 A;  2WCY A;  1YTP A;  1PCE A;  2NU3 I;  2ARP F;  2OVO A;  2B0U C;  1SGY I;  2XRC A;  2SGD I;  1CE3 A;  1UVG A;  4GI3 C;  1NUB A;  2BUS A;  1CGJ I;  1UVF A;  2ERW A;  2NU0 I;  1IY6 A;  2SGQ I;  1OMT A;  1UUC A;  2QQC A;  1PPF I;  1H0Z A;  1SGD I;  2F3C I;  2KCX A;  1CT4 I;  1Y1C A;  2LEO A;  2SGF I;  2KMQ A;  4SGB I;  1CSO I;  2N52 A;  2NU2 I;  1DS2 I;  2GKR I;  1OYV I;  2NU4 I;  3HH2 C;  2KMO A;  3OVO A;  4HGU A;  2SGE I;  1BUS A;  2N17 A;  1BMO A;  1SGP I;  2SGP I;  1Z7K B;  3QTL D;  1Y1B A;  1TGS I;  2JXD A;  1SGE I;  2N71 A;  2QQD A;  2JYY A;  2GKT I;  1CHO I;  2GKV A;  2P6A C;  1TUS A;  1SGR I;  1SGQ I;  1HJA I;  3B4V C;  1KMA A;  3SGQ I;  1AN1 I;  1LR9 A;  1CGI I;  1FYB A;  2KMP A;  5DAE A;  3SEK C;  1PJU A;  1IY5 A;  1MT1 A;  5JHW C;  1TUR A;  1CT0 I;  1M8B A;  1N13 A;  1R0R I;  2KMR A;  1LR7 A;  1DS3 I;  2M5X A;  2JZM A;  1HDL A;  1OVO A;  1M8C A;  1TBQ R;  1TIH A;  2NU1 I;  3SGB I;  4OVO A;  3TJQ A;  1YU6 C;  1CT2 I;  1HPT A;  1OMU A;  1SGN I;  1LR8 A;  2V53 A; 
#chains in the Genus database with same CATH topology
 1PTQ A;  1TBR R;  1IW4 A;  2WCY A;  1YTP A;  1ULK A;  2Y0M A;  1PCE A;  2OD1 A;  5CCM A;  3VDP A;  2QPO A;  5FUY A;  1WGC A;  2W0T A;  3VDU A;  2NU3 I;  1FAQ A;  2ARP F;  2OVO A;  4MPI A;  2YQP A;  2V1C C;  2CWH A;  1X74 A;  2B0U C;  2FNF X;  2ORV A;  2QQE A;  1SGY I;  2XRC A;  1TBO A;  4UXJ A;  5HI7 A;  2SGD I;  2WVJ A;  3FSY A;  5EX0 A;  3TOB A;  4A24 A;  1CE3 A;  1UVG A;  3RU0 A;  4GI3 C;  4L9M A;  2ENZ A;  2B8T A;  2L8E A;  1NUB A;  2BUS A;  3R5D A;  2CJS C;  1CGJ I;  1K7U A;  1NXU A;  1UVF A;  1V1H A;  2LUY A;  2RC4 A;  2ERW A;  2JW6 A;  2ELI A;  2NU0 I;  2LB7 A;  4E1P A;  5E3P A;  1H0Z A;  2DKV A;  1IY6 A;  2SGQ I;  1OMT A;  1UUC A;  1XX6 A;  1PPF I;  2QQC A;  1TOT A;  1SGD I;  2F3C I;  1R79 A;  2KCX A;  3QWP A;  4JCV E;  1CT4 I;  5FUX A;  1Y1C A;  2LEO A;  2SGF I;  2KMQ A;  1P9G A;  1P9Z A;  1WGT A;  3UFF A;  4SGB I;  1K7V A;  2ROW A;  1XA6 A;  1CSO I;  2N52 A;  2NU2 I;  2GIV A;  1DS2 I;  2OZU A;  2GKR I;  5J8F A;  2CWF A;  1OYV I;  2NU4 I;  3HH2 C;  2RIJ A;  2KMO A;  3OVO A;  3QAH A;  3R5A A;  1MJ9 A;  1ULN A;  2ODD A;  4HGU A;  2DIP A;  1FAR A;  2J9R A;  5E3R A;  3TO6 A;  2SGE I;  2L7X A;  1BUS A;  2N17 A;  1BMO A;  1SGP I;  3OXG A;  1UHA A;  2ENN A;  2SGP I;  1W4R A;  1Z7K B;  2OU2 A;  3QTL D;  1VDD A;  2K9H A;  2E5R A;  1K7T A;  1PTR A;  3BJI A;  1Y1B A;  1TGS I;  2JXD A;  3TO7 A;  1S20 A;  1SGE I;  2N71 A;  1U5K A;  2QQD A;  1X4S A;  1WKX A;  5FUV A;  2GVI A;  2UZ3 A;  4UXH A;  7WGA A;  3GOX A;  2JYY A;  2GKT I;  3TO9 A;  1CHO I;  2GKV A;  1FY7 A;  2P6A C;  1TUS A;  2QQ0 A;  3KY9 A;  2V1C A;  3PDN A;  3MEK A;  3UGL A;  5FUW A;  3R5C A;  1SGR I;  2A20 A;  1SGQ I;  3D00 A;  1HJA I;  3B4V C;  4WP4 A;  5CCL A;  1KMA A;  2N1A B;  3SGQ I;  2E73 A;  1AN1 I;  1XBT A;  1LR9 A;  1CGI I;  2WGC A;  2X3T A;  2X52 A;  2KMP A;  3CXL A;  3OL0 A;  4B6D A;  5J8C A;  1FYB A;  4FKD A;  2JA1 A;  4E1R A;  4AML A;  5DAE A;  1MJA A;  3R5B A;  3SEK C;  1Y8F A;  1WTJ A;  1Q9B A;  3UOE A;  1PJU A;  4UXI A;  3FC3 A;  1IY5 A;  1MT1 A;  5JHW C;  1TBN A;  4DNC A;  2DB6 A;  3UGD A;  5HQ8 A;  1TUR A;  1Z2I A;  2VRW B;  1CT0 I;  1M8B A;  1N13 A;  1R0R I;  3VE5 A;  3UEY A;  2KMR A;  1LR7 A;  1KBF A;  1MJB A;  2ORW A;  3E2I A;  1DS3 I;  3UGI A;  2M5X A;  2JZM A;  2YUU A;  1HDL A;  1OVO A;  1M8C A;  2J87 A;  3FSX A;  3OXF A;  1TBQ R;  3E59 A;  1TIH A;  1KBE A;  1W3S A;  1ULM A;  2NU1 I;  2UVO A;  3SGB I;  1V1I A;  4OVO A;  3TOA A;  5EX3 A;  3OXL A;  9WGA A;  3TJQ A;  3UEJ A;  1YU6 C;  1CT2 I;  5E3Q A;  1HEV A;  1RFH A;  1HPT A;  1OMU A;  1SGN I;  1LR8 A;  2PQ8 A;  2CWG A;  2V53 A; 
#chains in the Genus database with same CATH homology
 1PTQ A;  1TBR R;  1IW4 A;  2WCY A;  1YTP A;  1PCE A;  2OD1 A;  5CCM A;  3VDP A;  2QPO A;  5FUY A;  2W0T A;  3VDU A;  2NU3 I;  1FAQ A;  2ARP F;  2OVO A;  2YQP A;  2V1C C;  1X74 A;  2B0U C;  2FNF X;  2ORV A;  2QQE A;  1SGY I;  2XRC A;  1TBO A;  4UXJ A;  5HI7 A;  2SGD I;  2WVJ A;  5EX0 A;  4A24 A;  1CE3 A;  1UVG A;  3RU0 A;  4GI3 C;  4L9M A;  2ENZ A;  2B8T A;  2L8E A;  1NUB A;  2BUS A;  2CJS C;  1CGJ I;  1UVF A;  1V1H A;  2LUY A;  2ERW A;  2JW6 A;  2ELI A;  2NU0 I;  4E1P A;  1H0Z A;  1IY6 A;  2SGQ I;  1OMT A;  1UUC A;  1XX6 A;  1PPF I;  2QQC A;  1TOT A;  1SGD I;  2F3C I;  1R79 A;  2KCX A;  3QWP A;  4JCV E;  1CT4 I;  5FUX A;  1Y1C A;  2LEO A;  2SGF I;  2KMQ A;  3UFF A;  4SGB I;  2ROW A;  1XA6 A;  1CSO I;  2N52 A;  2NU2 I;  1DS2 I;  2GKR I;  1OYV I;  2NU4 I;  3HH2 C;  2KMO A;  3OVO A;  2ODD A;  4HGU A;  2DIP A;  1FAR A;  2J9R A;  2SGE I;  2L7X A;  1BUS A;  2N17 A;  1BMO A;  1SGP I;  3OXG A;  2ENN A;  2SGP I;  1W4R A;  1Z7K B;  3QTL D;  1VDD A;  2K9H A;  2E5R A;  1PTR A;  3BJI A;  1Y1B A;  1TGS I;  2JXD A;  1SGE I;  2N71 A;  1U5K A;  2QQD A;  1X4S A;  5FUV A;  3GOX A;  2GVI A;  2UZ3 A;  4UXH A;  2JYY A;  2GKT I;  1CHO I;  2GKV A;  2P6A C;  2QQ0 A;  1TUS A;  3KY9 A;  3PDN A;  2V1C A;  3UGL A;  3MEK A;  5FUW A;  1SGR I;  2A20 A;  1SGQ I;  3D00 A;  1HJA I;  3B4V C;  5CCL A;  1KMA A;  2N1A B;  3SGQ I;  2E73 A;  1AN1 I;  1XBT A;  1LR9 A;  1CGI I;  1FYB A;  3OL0 A;  2KMP A;  3CXL A;  4B6D A;  4FKD A;  2JA1 A;  4E1R A;  5DAE A;  3SEK C;  1Y8F A;  1PJU A;  4UXI A;  3FC3 A;  1IY5 A;  1MT1 A;  5JHW C;  1TBN A;  2DB6 A;  3UGD A;  5HQ8 A;  1TUR A;  2VRW B;  1CT0 I;  1M8B A;  1N13 A;  1R0R I;  3VE5 A;  3UEY A;  2KMR A;  1LR7 A;  1KBF A;  2ORW A;  3E2I A;  1DS3 I;  3UGI A;  2M5X A;  2JZM A;  2YUU A;  1HDL A;  1OVO A;  1M8C A;  2J87 A;  3OXF A;  1TBQ R;  3E59 A;  1TIH A;  1KBE A;  1W3S A;  2NU1 I;  3SGB I;  1V1I A;  4OVO A;  5EX3 A;  3OXL A;  3TJQ A;  3UEJ A;  1YU6 C;  1CT2 I;  1RFH A;  1HPT A;  1OMU A;  1SGN I;  1LR8 A;  2V53 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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