1OMTA

Solution structure of ovomucoid (third domain) from domestic turkey (298k, ph 4.1) (nmr, 50 structures) (standard noesy analysis)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
56
structure length
56
Chain Sequence
b'LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords OVOMUCOID (THIRD DOMAIN)
publication title Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data.
pubmed rcsb
molecule tags Serine proteinase inhibitor
total genus 8
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 1995-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1omtA00
2OVOA 2KMRA 4GI3C 1TIHA 1YTPA 1IW4A 1Z7KB 1OVOA 1M8BA 1HPTA 1YU6C 3HH2C 2KCXA 1IY6A 3B4VC 1H0ZA 1Y1BA 2JXDA 2NU3I 2NU0I 3TJQA 1CGII 1SGDI 1PJUA 2NU1I 2NU4I 1KMAA 1SGPI 1BUSA 1IY5A 3SGQI 1DS2I 1UUCA 2ERWA 1CGJI 2JZMA 2N71A 1SGEI 2KMQA 2XRCA 1LR9A 2WCYA 1PCEA 2BUSA 2P6AC 1TURA 2QQCA 1CT4I 4OVOA 1UVFA 5DAEA 1Y1CA 2JYYA 2NU2I 1CHOI 2SGQI 2SGFI 1CT2I 3SEKC 2ARPF 1OMUA 1TBRR 3SGBI 1SGNI 1OMTA 1UVGA 1HDLA 2N52A 1BMOA 1M8CA 1PPFI 1LR8A 2V53A 1DS3I 1TUSA 1LR7A 3OVOA 2SGPI 2GKTI 1CE3A 4HGUA 1SGQI 1SGRI 1OYVI 2GKRI 2QQDA 2KMPA 1TGSI 5JHWC 1CT0I 2M5XA 1MT1A 1R0RI 2GKVA 1SGYI 2N17A 4SGBI 2SGEI 2LEOA 2B0UC 1N13A 1NUBA 1AN1I 2KMOA 3QTLD 2F3CI 2SGDI 1HJAI 1TBQR 1CSOI 1FYBA
chains in the Genus database with same CATH superfamily
1KBEA 2OVOA 2CWHA 2PQ8A 3TOAA 3OL0A 2KMRA 4GI3C 1TIHA 1YTPA 1IW4A 1Z7KB 3KY9A 5EX3A 1OVOA 3FSYA 3UGDA 1M8BA 1Q9BA 1VDDA 1HPTA 4UXJA 3E59A 2ORWA 1WTJA 1YU6C 1XA6A 2CJSC 3HH2C 1Z2IA 3R5CA 1TBOA 2KCXA 4UXIA 2YQPA 1IY6A 5EX0A 2UVOA 3B4VC 3OXGA 1H0ZA 5FUVA 2ENNA 3FSXA 5J8CA 2LUYA 2E5RA 1Y1BA 2JXDA 1MJAA 2NU3I 1PTRA 1R79A 2NU0I 2V1CA 3QAHA 3TJQA 1CGII 1SGDI 2UZ3A 1PJUA 2X52A 2NU1I 2NU4I 2ROWA 3BJIA 1KMAA 3TO7A 1SGPI 2L7XA 2DB6A 1K7UA 2B8TA 3UOEA 1BUSA 2WVJA 2E73A 1TBNA 1NXUA 2V1CC 3SGQI 1IY5A 1DS2I 1UUCA 5FUWA 2RIJA 4A24A 2ERWA 1CGJI 2JZMA 3R5DA 1MJ9A 2N71A 1SGEI 2KMQA 2XRCA 1X74A 2QQ0A 4UXHA 2DIPA 1LR9A 1FARA 2WCYA 1PCEA 5E3QA 2BUSA 2N1AB 2P6AC 3TO6A 3UEJA 1TURA 2QQCA 1CT4I 4DNCA 4OVOA 2DKVA 1K7VA 2OZUA 1UVFA 1FAQA 5DAEA 1PTQA 1Y1CA 2JYYA 1K7TA 1CHOI 2NU2I 2SGQI 3E2IA 3TOBA 2SGFI 2ELIA 3UGLA 5HQ8A 5FUYA 1W4RA 3VDPA 2JA1A 1CT2I 2QPOA 2L8EA 3SEKC 2J9RA 3VDUA 5CCMA 2JW6A 1FY7A 1X4SA 2ARPF 4FKDA 1RFHA 1P9GA 3UGIA 1OMUA 1TBRR 3SGBI 2YUUA 1SGNI 5HI7A 2FNFX 1OMTA 2OD1A 1UVGA 1Y8FA 2A20A 4MPIA 9WGAA 1HDLA 5FUXA 2N52A 3QWPA 2ODDA 1UHAA 1V1HA 2CWGA 4JCVE 4E1RA 4L9MA 1BMOA 5CCLA 1M8CA 1PPFI 1LR8A 2CWFA 1DS3I 2V53A 1WGCA 4B6DA 2X3TA 1U5KA 3TO9A 1P9ZA 1LR7A 1TUSA 3OVOA 2VRWB 3UEYA 3FC3A 1XX6A 2SGPI 2W0TA 2GKTI 1KBFA 4WP4A 1CE3A 1S20A 1SGQI 4HGUA 2OU2A 2WGCA 2QQEA 2K9HA 1SGRI 1OYVI 1ULKA 2GKRI 2QQDA 2KMPA 1W3SA 3RU0A 1TGSI 2J87A 4E1PA 3OXFA 5JHWC 1HEVA 3R5BA 1CT0I 7WGAA 2M5XA 3D00A 3CXLA 3VE5A 1MT1A 3MEKA 3PDNA 1R0RI 2GKVA 2ORVA 3R5AA 1SGYI 1TOTA 3UFFA 4AMLA 2N17A 5J8FA 4SGBI 3GOXA 2SGEI 5E3RA 2GIVA 2LEOA 2B0UC 1N13A 2Y0MA 1ULMA 5E3PA 1XBTA 1NUBA 2ENZA 1AN1I 2KMOA 1V1IA 1WGTA 1WKXA 1MJBA 3QTLD 2F3CI 2GVIA 2LB7A 2SGDI 3OXLA 2RC4A 1HJAI 1TBQR 1ULNA 1CSOI 1FYBA
chains in the Genus database with same CATH topology
1KBEA 2OVOA 3OL0A 2KMRA 4GI3C 1TIHA 1YTPA 1IW4A 1Z7KB 3KY9A 5EX3A 1OVOA 3UGDA 1M8BA 1VDDA 1HPTA 4UXJA 3E59A 2ORWA 1YU6C 1XA6A 2CJSC 3HH2C 1TBOA 2KCXA 4UXIA 2YQPA 1IY6A 5EX0A 3B4VC 3OXGA 1H0ZA 5FUVA 2ENNA 2LUYA 2E5RA 1Y1BA 2JXDA 2NU3I 1PTRA 1R79A 2NU0I 2V1CA 3TJQA 1CGII 1SGDI 2UZ3A 1PJUA 2NU1I 2NU4I 2ROWA 3BJIA 1KMAA 1SGPI 2L7XA 2DB6A 2B8TA 1BUSA 2WVJA 2E73A 1TBNA 2V1CC 3SGQI 1IY5A 1DS2I 1UUCA 5FUWA 4A24A 2ERWA 1CGJI 2JZMA 2N71A 1SGEI 2KMQA 2XRCA 1X74A 2QQ0A 4UXHA 2DIPA 1LR9A 1FARA 2WCYA 1PCEA 3UEJA 2BUSA 2N1AB 2P6AC 1TURA 2QQCA 1CT4I 4OVOA 1UVFA 1FAQA 5DAEA 1PTQA 1Y1CA 2JYYA 2NU2I 1CHOI 3E2IA 2SGQI 2SGFI 2ELIA 3UGLA 5HQ8A 5FUYA 1W4RA 3VDPA 2JA1A 1CT2I 2QPOA 2L8EA 3SEKC 2J9RA 3VDUA 5CCMA 2JW6A 1X4SA 2ARPF 4FKDA 1RFHA 3UGIA 1OMUA 1TBRR 3SGBI 2YUUA 1SGNI 5HI7A 2FNFX 1OMTA 2OD1A 1UVGA 1Y8FA 2A20A 1HDLA 5FUXA 2N52A 3QWPA 2ODDA 1V1HA 4JCVE 4E1RA 4L9MA 1BMOA 5CCLA 1M8CA 1PPFI 1LR8A 2V53A 1DS3I 4B6DA 1U5KA 1TUSA 1LR7A 3OVOA 3UEYA 2VRWB 3FC3A 1KBFA 1XX6A 2SGPI 2W0TA 2GKTI 1CE3A 4HGUA 1SGQI 2QQEA 2K9HA 1SGRI 1OYVI 2GKRI 2QQDA 2KMPA 1W3SA 3RU0A 1TGSI 2J87A 4E1PA 3OXFA 5JHWC 1CT0I 2M5XA 3D00A 3CXLA 3VE5A 1MT1A 3MEKA 3PDNA 1R0RI 2GKVA 2ORVA 1SGYI 1TOTA 3UFFA 2N17A 4SGBI 3GOXA 2SGEI 2LEOA 2B0UC 1N13A 1XBTA 1NUBA 2ENZA 1AN1I 2KMOA 1V1IA 3QTLD 2F3CI 2GVIA 3OXLA 2SGDI 1HJAI 1TBQR 1CSOI 1FYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OVO A;  2KMR A;  4GI3 C;  1TIH A;  1YTP A;  1IW4 A;  1Z7K B;  1OVO A;  1M8B A;  1HPT A;  1YU6 C;  3HH2 C;  2KCX A;  1IY6 A;  3B4V C;  1H0Z A;  1Y1B A;  2JXD A;  2NU3 I;  2NU0 I;  3TJQ A;  1CGI I;  1SGD I;  1PJU A;  2NU1 I;  2NU4 I;  1KMA A;  1SGP I;  1BUS A;  1IY5 A;  3SGQ I;  1DS2 I;  1UUC A;  2ERW A;  1CGJ I;  2JZM A;  2N71 A;  1SGE I;  2KMQ A;  2XRC A;  1LR9 A;  2WCY A;  1PCE A;  2BUS A;  2P6A C;  1TUR A;  2QQC A;  1CT4 I;  4OVO A;  1UVF A;  5DAE A;  1Y1C A;  2JYY A;  2NU2 I;  1CHO I;  2SGQ I;  2SGF I;  1CT2 I;  3SEK C;  2ARP F;  1OMU A;  1TBR R;  3SGB I;  1SGN I;  1OMT A;  1UVG A;  1HDL A;  2N52 A;  1BMO A;  1M8C A;  1PPF I;  1LR8 A;  2V53 A;  1DS3 I;  1TUS A;  1LR7 A;  3OVO A;  2SGP I;  2GKT I;  1CE3 A;  4HGU A;  1SGQ I;  1SGR I;  1OYV I;  2GKR I;  2QQD A;  2KMP A;  1TGS I;  5JHW C;  1CT0 I;  2M5X A;  1MT1 A;  1R0R I;  2GKV A;  1SGY I;  2N17 A;  4SGB I;  2SGE I;  2LEO A;  2B0U C;  1N13 A;  1NUB A;  1AN1 I;  2KMO A;  3QTL D;  2F3C I;  2SGD I;  1HJA I;  1TBQ R;  1CSO I;  1FYB A; 
#chains in the Genus database with same CATH topology
 1KBE A;  2OVO A;  2CWH A;  2PQ8 A;  3TOA A;  3OL0 A;  2KMR A;  4GI3 C;  1TIH A;  1YTP A;  1IW4 A;  1Z7K B;  3KY9 A;  5EX3 A;  1OVO A;  3FSY A;  3UGD A;  1M8B A;  1Q9B A;  1VDD A;  1HPT A;  4UXJ A;  3E59 A;  2ORW A;  1WTJ A;  1YU6 C;  1XA6 A;  2CJS C;  3HH2 C;  1Z2I A;  3R5C A;  1TBO A;  2KCX A;  4UXI A;  2YQP A;  1IY6 A;  5EX0 A;  2UVO A;  3B4V C;  3OXG A;  1H0Z A;  5FUV A;  2ENN A;  3FSX A;  5J8C A;  2LUY A;  2E5R A;  1Y1B A;  2JXD A;  1MJA A;  2NU3 I;  1PTR A;  1R79 A;  2NU0 I;  2V1C A;  3QAH A;  3TJQ A;  1CGI I;  1SGD I;  2UZ3 A;  1PJU A;  2X52 A;  2NU1 I;  2NU4 I;  2ROW A;  3BJI A;  1KMA A;  3TO7 A;  1SGP I;  2L7X A;  2DB6 A;  1K7U A;  2B8T A;  3UOE A;  1BUS A;  2WVJ A;  2E73 A;  1TBN A;  1NXU A;  2V1C C;  3SGQ I;  1IY5 A;  1DS2 I;  1UUC A;  5FUW A;  2RIJ A;  4A24 A;  2ERW A;  1CGJ I;  2JZM A;  3R5D A;  1MJ9 A;  2N71 A;  1SGE I;  2KMQ A;  2XRC A;  1X74 A;  2QQ0 A;  4UXH A;  2DIP A;  1LR9 A;  1FAR A;  2WCY A;  1PCE A;  5E3Q A;  2BUS A;  2N1A B;  2P6A C;  3TO6 A;  3UEJ A;  1TUR A;  2QQC A;  1CT4 I;  4DNC A;  4OVO A;  2DKV A;  1K7V A;  2OZU A;  1UVF A;  1FAQ A;  5DAE A;  1PTQ A;  1Y1C A;  2JYY A;  1K7T A;  1CHO I;  2NU2 I;  2SGQ I;  3E2I A;  3TOB A;  2SGF I;  2ELI A;  3UGL A;  5HQ8 A;  5FUY A;  1W4R A;  3VDP A;  2JA1 A;  1CT2 I;  2QPO A;  2L8E A;  3SEK C;  2J9R A;  3VDU A;  5CCM A;  2JW6 A;  1FY7 A;  1X4S A;  2ARP F;  4FKD A;  1RFH A;  1P9G A;  3UGI A;  1OMU A;  1TBR R;  3SGB I;  2YUU A;  1SGN I;  5HI7 A;  2FNF X;  1OMT A;  2OD1 A;  1UVG A;  1Y8F A;  2A20 A;  4MPI A;  9WGA A;  1HDL A;  5FUX A;  2N52 A;  3QWP A;  2ODD A;  1UHA A;  1V1H A;  2CWG A;  4JCV E;  4E1R A;  4L9M A;  1BMO A;  5CCL A;  1M8C A;  1PPF I;  1LR8 A;  2CWF A;  1DS3 I;  2V53 A;  1WGC A;  4B6D A;  2X3T A;  1U5K A;  3TO9 A;  1P9Z A;  1LR7 A;  1TUS A;  3OVO A;  2VRW B;  3UEY A;  3FC3 A;  1XX6 A;  2SGP I;  2W0T A;  2GKT I;  1KBF A;  4WP4 A;  1CE3 A;  1S20 A;  1SGQ I;  4HGU A;  2OU2 A;  2WGC A;  2QQE A;  2K9H A;  1SGR I;  1OYV I;  1ULK A;  2GKR I;  2QQD A;  2KMP A;  1W3S A;  3RU0 A;  1TGS I;  2J87 A;  4E1P A;  3OXF A;  5JHW C;  1HEV A;  3R5B A;  1CT0 I;  7WGA A;  2M5X A;  3D00 A;  3CXL A;  3VE5 A;  1MT1 A;  3MEK A;  3PDN A;  1R0R I;  2GKV A;  2ORV A;  3R5A A;  1SGY I;  1TOT A;  3UFF A;  4AML A;  2N17 A;  5J8F A;  4SGB I;  3GOX A;  2SGE I;  5E3R A;  2GIV A;  2LEO A;  2B0U C;  1N13 A;  2Y0M A;  1ULM A;  5E3P A;  1XBT A;  1NUB A;  2ENZ A;  1AN1 I;  2KMO A;  1V1I A;  1WGT A;  1WKX A;  1MJB A;  3QTL D;  2F3C I;  2GVI A;  2LB7 A;  2SGD I;  3OXL A;  2RC4 A;  1HJA I;  1TBQ R;  1ULN A;  1CSO I;  1FYB A; 
#chains in the Genus database with same CATH homology
 1KBE A;  2OVO A;  3OL0 A;  2KMR A;  4GI3 C;  1TIH A;  1YTP A;  1IW4 A;  1Z7K B;  3KY9 A;  5EX3 A;  1OVO A;  3UGD A;  1M8B A;  1VDD A;  1HPT A;  4UXJ A;  3E59 A;  2ORW A;  1YU6 C;  1XA6 A;  2CJS C;  3HH2 C;  1TBO A;  2KCX A;  4UXI A;  2YQP A;  1IY6 A;  5EX0 A;  3B4V C;  3OXG A;  1H0Z A;  5FUV A;  2ENN A;  2LUY A;  2E5R A;  1Y1B A;  2JXD A;  2NU3 I;  1PTR A;  1R79 A;  2NU0 I;  2V1C A;  3TJQ A;  1CGI I;  1SGD I;  2UZ3 A;  1PJU A;  2NU1 I;  2NU4 I;  2ROW A;  3BJI A;  1KMA A;  1SGP I;  2L7X A;  2DB6 A;  2B8T A;  1BUS A;  2WVJ A;  2E73 A;  1TBN A;  2V1C C;  3SGQ I;  1IY5 A;  1DS2 I;  1UUC A;  5FUW A;  4A24 A;  2ERW A;  1CGJ I;  2JZM A;  2N71 A;  1SGE I;  2KMQ A;  2XRC A;  1X74 A;  2QQ0 A;  4UXH A;  2DIP A;  1LR9 A;  1FAR A;  2WCY A;  1PCE A;  3UEJ A;  2BUS A;  2N1A B;  2P6A C;  1TUR A;  2QQC A;  1CT4 I;  4OVO A;  1UVF A;  1FAQ A;  5DAE A;  1PTQ A;  1Y1C A;  2JYY A;  2NU2 I;  1CHO I;  3E2I A;  2SGQ I;  2SGF I;  2ELI A;  3UGL A;  5HQ8 A;  5FUY A;  1W4R A;  3VDP A;  2JA1 A;  1CT2 I;  2QPO A;  2L8E A;  3SEK C;  2J9R A;  3VDU A;  5CCM A;  2JW6 A;  1X4S A;  2ARP F;  4FKD A;  1RFH A;  3UGI A;  1OMU A;  1TBR R;  3SGB I;  2YUU A;  1SGN I;  5HI7 A;  2FNF X;  1OMT A;  2OD1 A;  1UVG A;  1Y8F A;  2A20 A;  1HDL A;  5FUX A;  2N52 A;  3QWP A;  2ODD A;  1V1H A;  4JCV E;  4E1R A;  4L9M A;  1BMO A;  5CCL A;  1M8C A;  1PPF I;  1LR8 A;  2V53 A;  1DS3 I;  4B6D A;  1U5K A;  1TUS A;  1LR7 A;  3OVO A;  3UEY A;  2VRW B;  3FC3 A;  1KBF A;  1XX6 A;  2SGP I;  2W0T A;  2GKT I;  1CE3 A;  4HGU A;  1SGQ I;  2QQE A;  2K9H A;  1SGR I;  1OYV I;  2GKR I;  2QQD A;  2KMP A;  1W3S A;  3RU0 A;  1TGS I;  2J87 A;  4E1P A;  3OXF A;  5JHW C;  1CT0 I;  2M5X A;  3D00 A;  3CXL A;  3VE5 A;  1MT1 A;  3MEK A;  3PDN A;  1R0R I;  2GKV A;  2ORV A;  1SGY I;  1TOT A;  3UFF A;  2N17 A;  4SGB I;  3GOX A;  2SGE I;  2LEO A;  2B0U C;  1N13 A;  1XBT A;  1NUB A;  2ENZ A;  1AN1 I;  2KMO A;  1V1I A;  3QTL D;  2F3C I;  2GVI A;  3OXL A;  2SGD I;  1HJA I;  1TBQ R;  1CSO I;  1FYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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