1MT1A

The crystal structure of pyruvoyl-dependent arginine decarboxylase from methanococcus jannaschii
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
46
structure length
46
Chain Sequence
PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Methanocaldococcus jannaschii
publication title Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms
pubmed doi rcsb
molecule keywords PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN
total genus 6
structure length 46
sequence length 46
chains with identical sequence C, E, G, I, K
ec nomenclature ec 4.1.1.19: Arginine decarboxylase.
pdb deposition date 2002-09-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1mt1A00
1PCEA 2NU4I 1Y1BA 2BUSA 1LR9A 1PJUA 3SEKC 2WCYA 4HGUA 1IY5A 1SGEI 1FYBA 1CE3A 2GKTI 1M8CA 2GKVA 1R0RI 2NU1I 2ERWA 2NU3I 1TURA 3HH2C 1OYVI 3OVOA 1Y1CA 1N13A 1OMUA 5DAEA 1DS3I 1SGPI 1TBQR 1CT4I 2QQDA 1CSOI 1BMOA 1CGII 1SGDI 2XRCA 1HPTA 2JYYA 3SGQI 2NU2I 4OVOA 1SGYI 4GI3C 1OVOA 2P6AC 2QQCA 3SGBI 2SGDI 1SGQI 1H0ZA 2SGEI 2N71A 2JZMA 1CGJI 1Z7KB 2KMPA 1CT2I 2SGFI 2KMRA 1SGRI 1YTPA 3B4VC 1OMTA 3TJQA 1HJAI 2OVOA 1TUSA 1TIHA 2ARPF 2JXDA 1CHOI 1UVFA 1IW4A 1UUCA 2N52A 1DS2I 1YU6C 2KCXA 1TBRR 1M8BA 1PPFI 1IY6A 1NUBA 3QTLD 2V53A 2NU0I 1LR7A 1KMAA 2KMQA 1SGNI 1BUSA 2LEOA 1AN1I 1UVGA 2N17A 2M5XA 1CT0I 5JHWC 2KMOA 2SGPI 1HDLA 1MT1A 1LR8A 2GKRI 2B0UC 2F3CI 1TGSI 2SGQI 4SGBI
chains in the Genus database with same CATH superfamily
1KBFA 3E59A 2L8EA 1PCEA 1K7TA 1ULKA 5J8FA 2NU4I 2FNFX 1Y1BA 2UVOA 1K7VA 3QWPA 2DIPA 1XBTA 3VDUA 1MJAA 3UGLA 2BUSA 1LR9A 2LUYA 2JA1A 1PJUA 3SEKC 2WCYA 4HGUA 1WGCA 1Q9BA 3OL0A 3UGDA 2Y0MA 5EX0A 1SGEI 1U5KA 1WGTA 1IY5A 3TO9A 4DNCA 1HEVA 1FYBA 4UXHA 2WGCA 2E73A 1CE3A 5J8CA 2GKTI 2J9RA 2RIJA 5E3RA 3TOBA 2V1CC 3VE5A 2PQ8A 1Y8FA 1M8CA 4L9MA 3FSXA 3E2IA 3UEYA 4A24A 2GKVA 4UXJA 2JW6A 5CCLA 1WTJA 1TOTA 1R0RI 2NU1I 3R5BA 2DB6A 2ERWA 2NU3I 3TOAA 2CWFA 2LB7A 1TURA 3HH2C 1OYVI 2ENZA 3OVOA 3UEJA 1NXUA 1Y1CA 1N13A 1OMUA 4FKDA 5DAEA 3UFFA 1X74A 1DS3I 1SGPI 1TBQR 2WVJA 2ODDA 5FUXA 1CT4I 1KBEA 1CSOI 2QQDA 1BMOA 3D00A 4E1PA 1CGII 2VRWB 2CWGA 1SGDI 1VDDA 2XRCA 1FARA 2B8TA 1P9GA 1R79A 1Z2IA 2A20A 1HPTA 2JYYA 3SGQI 2GVIA 3FSYA 2QQEA 2DKVA 2V1CA 2NU2I 4OVOA 1SGYI 4GI3C 1OVOA 5HQ8A 2P6AC 1MJ9A 1V1HA 2QQCA 2W0TA 5E3QA 2OD1A 2SGDI 3SGBI 1W4RA 1SGQI 1P9ZA 3TO6A 1H0ZA 2GIVA 2SGEI 4WP4A 1MJBA 2JZMA 2N71A 3UGIA 3R5CA 5E3PA 4B6DA 1CGJI 1Z7KB 2KMPA 3QAHA 1CT2I 2SGFI 2OZUA 2E5RA 9WGAA 3OXLA 4AMLA 2KMRA 1TBOA 1SGRI 1X4SA 2J87A 5HI7A 2K9HA 1ULNA 1YTPA 2ROWA 3B4VC 1OMTA 1ULMA 2N1AB 2X3TA 1HJAI 2X52A 3TJQA 1WKXA 1HDLA 2ORWA 2OVOA 2QQ0A 1TUSA 4MPIA 1TIHA 1XX6A 2ARPF 2JXDA 1CHOI 1RFHA 1UVFA 1IW4A 1UUCA 2N52A 1DS2I 1XA6A 1YU6C 3UOEA 2CWHA 2KCXA 1TBRR 1M8BA 3VDPA 1PPFI 2ENNA 4JCVE 3RU0A 1IY6A 3OXGA 1NUBA 2OU2A 5EX3A 3R5DA 3QTLD 3GOXA 3R5AA 1UHAA 2V53A 7WGAA 2NU0I 2L7XA 1LR7A 2YQPA 1KMAA 2UZ3A 1PTRA 1PTQA 3TO7A 2KMQA 1SGNI 4E1RA 5FUVA 1FY7A 3MEKA 1BUSA 2RC4A 2ORVA 2LEOA 1K7UA 1AN1I 1UVGA 1FAQA 2N17A 5CCMA 1TBNA 2ELIA 2M5XA 5FUYA 3OXFA 1CT0I 5JHWC 4UXIA 2KMOA 3CXLA 2QPOA 2SGPI 1MT1A 3PDNA 1S20A 1LR8A 3BJIA 2GKRI 3KY9A 3FC3A 2B0UC 5FUWA 1V1IA 2CJSC 2F3CI 1TGSI 1W3SA 2SGQI 4SGBI 2YUUA
chains in the Genus database with same CATH topology
1KBFA 3E59A 2L8EA 1PCEA 2NU4I 2FNFX 1Y1BA 3QWPA 2DIPA 1XBTA 3VDUA 3UGLA 2BUSA 1LR9A 2LUYA 2JA1A 1PJUA 3SEKC 2WCYA 4HGUA 3OL0A 3UGDA 5EX0A 1SGEI 1U5KA 1IY5A 1FYBA 4UXHA 2E73A 1CE3A 2GKTI 2J9RA 2V1CC 3VE5A 1Y8FA 1M8CA 4L9MA 3E2IA 3UEYA 4A24A 2GKVA 4UXJA 2JW6A 5CCLA 1TOTA 1R0RI 2NU1I 2DB6A 2ERWA 2NU3I 1TURA 3HH2C 1OYVI 2ENZA 3OVOA 3UEJA 1Y1CA 3UFFA 1N13A 1OMUA 4FKDA 5DAEA 1X74A 1DS3I 1SGPI 1TBQR 2WVJA 2ODDA 5FUXA 1CT4I 1KBEA 1CSOI 2QQDA 1BMOA 3D00A 4E1PA 1CGII 2VRWB 1SGDI 1VDDA 2XRCA 1FARA 2B8TA 1R79A 2A20A 1HPTA 2JYYA 3SGQI 2GVIA 2QQEA 2V1CA 2NU2I 4OVOA 1SGYI 4GI3C 1OVOA 5HQ8A 2P6AC 1V1HA 2QQCA 2W0TA 3SGBI 2OD1A 2SGDI 1W4RA 1SGQI 1H0ZA 2SGEI 2N71A 2JZMA 3UGIA 4B6DA 1CGJI 1Z7KB 2KMPA 1CT2I 2SGFI 2E5RA 3OXLA 2KMRA 1TBOA 1SGRI 1X4SA 2J87A 5HI7A 2K9HA 2ROWA 1YTPA 3B4VC 1OMTA 2N1AB 3TJQA 1HJAI 2ORWA 2OVOA 2QQ0A 1TUSA 1TIHA 1XX6A 2ARPF 2JXDA 1CHOI 1RFHA 1UVFA 1IW4A 1UUCA 2N52A 1DS2I 1XA6A 1YU6C 2KCXA 1TBRR 1M8BA 3VDPA 1PPFI 2ENNA 4JCVE 3RU0A 1IY6A 3OXGA 1NUBA 5EX3A 3GOXA 3QTLD 2V53A 2NU0I 2L7XA 1LR7A 2YQPA 1KMAA 2UZ3A 1PTRA 1PTQA 2KMQA 1SGNI 4E1RA 5FUVA 3MEKA 1BUSA 2ORVA 2LEOA 1AN1I 1UVGA 1FAQA 2N17A 5CCMA 1TBNA 2ELIA 2M5XA 5FUYA 3OXFA 1CT0I 5JHWC 4UXIA 2KMOA 3CXLA 2QPOA 2SGPI 1MT1A 3PDNA 3FC3A 1LR8A 3BJIA 2GKRI 3KY9A 1HDLA 2B0UC 5FUWA 1V1IA 2CJSC 2F3CI 1TGSI 1W3SA 2SGQI 4SGBI 2YUUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PCE A;  2NU4 I;  1Y1B A;  2BUS A;  1LR9 A;  1PJU A;  3SEK C;  2WCY A;  4HGU A;  1IY5 A;  1SGE I;  1FYB A;  1CE3 A;  2GKT I;  1M8C A;  2GKV A;  1R0R I;  2NU1 I;  2ERW A;  2NU3 I;  1TUR A;  3HH2 C;  1OYV I;  3OVO A;  1Y1C A;  1N13 A;  1OMU A;  5DAE A;  1DS3 I;  1SGP I;  1TBQ R;  1CT4 I;  2QQD A;  1CSO I;  1BMO A;  1CGI I;  1SGD I;  2XRC A;  1HPT A;  2JYY A;  3SGQ I;  2NU2 I;  4OVO A;  1SGY I;  4GI3 C;  1OVO A;  2P6A C;  2QQC A;  3SGB I;  2SGD I;  1SGQ I;  1H0Z A;  2SGE I;  2N71 A;  2JZM A;  1CGJ I;  1Z7K B;  2KMP A;  1CT2 I;  2SGF I;  2KMR A;  1SGR I;  1YTP A;  3B4V C;  1OMT A;  3TJQ A;  1HJA I;  2OVO A;  1TUS A;  1TIH A;  2ARP F;  2JXD A;  1CHO I;  1UVF A;  1IW4 A;  1UUC A;  2N52 A;  1DS2 I;  1YU6 C;  2KCX A;  1TBR R;  1M8B A;  1PPF I;  1IY6 A;  1NUB A;  3QTL D;  2V53 A;  2NU0 I;  1LR7 A;  1KMA A;  2KMQ A;  1SGN I;  1BUS A;  2LEO A;  1AN1 I;  1UVG A;  2N17 A;  2M5X A;  1CT0 I;  5JHW C;  2KMO A;  2SGP I;  1HDL A;  1MT1 A;  1LR8 A;  2GKR I;  2B0U C;  2F3C I;  1TGS I;  2SGQ I;  4SGB I; 
#chains in the Genus database with same CATH topology
 1KBF A;  3E59 A;  2L8E A;  1PCE A;  1K7T A;  1ULK A;  5J8F A;  2NU4 I;  2FNF X;  1Y1B A;  2UVO A;  1K7V A;  3QWP A;  2DIP A;  1XBT A;  3VDU A;  1MJA A;  3UGL A;  2BUS A;  1LR9 A;  2LUY A;  2JA1 A;  1PJU A;  3SEK C;  2WCY A;  4HGU A;  1WGC A;  1Q9B A;  3OL0 A;  3UGD A;  2Y0M A;  5EX0 A;  1SGE I;  1U5K A;  1WGT A;  1IY5 A;  3TO9 A;  4DNC A;  1HEV A;  1FYB A;  4UXH A;  2WGC A;  2E73 A;  1CE3 A;  5J8C A;  2GKT I;  2J9R A;  2RIJ A;  5E3R A;  3TOB A;  2V1C C;  3VE5 A;  2PQ8 A;  1Y8F A;  1M8C A;  4L9M A;  3FSX A;  3E2I A;  3UEY A;  4A24 A;  2GKV A;  4UXJ A;  2JW6 A;  5CCL A;  1WTJ A;  1TOT A;  1R0R I;  2NU1 I;  3R5B A;  2DB6 A;  2ERW A;  2NU3 I;  3TOA A;  2CWF A;  2LB7 A;  1TUR A;  3HH2 C;  1OYV I;  2ENZ A;  3OVO A;  3UEJ A;  1NXU A;  1Y1C A;  1N13 A;  1OMU A;  4FKD A;  5DAE A;  3UFF A;  1X74 A;  1DS3 I;  1SGP I;  1TBQ R;  2WVJ A;  2ODD A;  5FUX A;  1CT4 I;  1KBE A;  1CSO I;  2QQD A;  1BMO A;  3D00 A;  4E1P A;  1CGI I;  2VRW B;  2CWG A;  1SGD I;  1VDD A;  2XRC A;  1FAR A;  2B8T A;  1P9G A;  1R79 A;  1Z2I A;  2A20 A;  1HPT A;  2JYY A;  3SGQ I;  2GVI A;  3FSY A;  2QQE A;  2DKV A;  2V1C A;  2NU2 I;  4OVO A;  1SGY I;  4GI3 C;  1OVO A;  5HQ8 A;  2P6A C;  1MJ9 A;  1V1H A;  2QQC A;  2W0T A;  5E3Q A;  2OD1 A;  2SGD I;  3SGB I;  1W4R A;  1SGQ I;  1P9Z A;  3TO6 A;  1H0Z A;  2GIV A;  2SGE I;  4WP4 A;  1MJB A;  2JZM A;  2N71 A;  3UGI A;  3R5C A;  5E3P A;  4B6D A;  1CGJ I;  1Z7K B;  2KMP A;  3QAH A;  1CT2 I;  2SGF I;  2OZU A;  2E5R A;  9WGA A;  3OXL A;  4AML A;  2KMR A;  1TBO A;  1SGR I;  1X4S A;  2J87 A;  5HI7 A;  2K9H A;  1ULN A;  1YTP A;  2ROW A;  3B4V C;  1OMT A;  1ULM A;  2N1A B;  2X3T A;  1HJA I;  2X52 A;  3TJQ A;  1WKX A;  1HDL A;  2ORW A;  2OVO A;  2QQ0 A;  1TUS A;  4MPI A;  1TIH A;  1XX6 A;  2ARP F;  2JXD A;  1CHO I;  1RFH A;  1UVF A;  1IW4 A;  1UUC A;  2N52 A;  1DS2 I;  1XA6 A;  1YU6 C;  3UOE A;  2CWH A;  2KCX A;  1TBR R;  1M8B A;  3VDP A;  1PPF I;  2ENN A;  4JCV E;  3RU0 A;  1IY6 A;  3OXG A;  1NUB A;  2OU2 A;  5EX3 A;  3R5D A;  3QTL D;  3GOX A;  3R5A A;  1UHA A;  2V53 A;  7WGA A;  2NU0 I;  2L7X A;  1LR7 A;  2YQP A;  1KMA A;  2UZ3 A;  1PTR A;  1PTQ A;  3TO7 A;  2KMQ A;  1SGN I;  4E1R A;  5FUV A;  1FY7 A;  3MEK A;  1BUS A;  2RC4 A;  2ORV A;  2LEO A;  1K7U A;  1AN1 I;  1UVG A;  1FAQ A;  2N17 A;  5CCM A;  1TBN A;  2ELI A;  2M5X A;  5FUY A;  3OXF A;  1CT0 I;  5JHW C;  4UXI A;  2KMO A;  3CXL A;  2QPO A;  2SGP I;  1MT1 A;  3PDN A;  1S20 A;  1LR8 A;  3BJI A;  2GKR I;  3KY9 A;  3FC3 A;  2B0U C;  5FUW A;  1V1I A;  2CJS C;  2F3C I;  1TGS I;  1W3S A;  2SGQ I;  4SGB I;  2YUU A; 
#chains in the Genus database with same CATH homology
 1KBF A;  3E59 A;  2L8E A;  1PCE A;  2NU4 I;  2FNF X;  1Y1B A;  3QWP A;  2DIP A;  1XBT A;  3VDU A;  3UGL A;  2BUS A;  1LR9 A;  2LUY A;  2JA1 A;  1PJU A;  3SEK C;  2WCY A;  4HGU A;  3OL0 A;  3UGD A;  5EX0 A;  1SGE I;  1U5K A;  1IY5 A;  1FYB A;  4UXH A;  2E73 A;  1CE3 A;  2GKT I;  2J9R A;  2V1C C;  3VE5 A;  1Y8F A;  1M8C A;  4L9M A;  3E2I A;  3UEY A;  4A24 A;  2GKV A;  4UXJ A;  2JW6 A;  5CCL A;  1TOT A;  1R0R I;  2NU1 I;  2DB6 A;  2ERW A;  2NU3 I;  1TUR A;  3HH2 C;  1OYV I;  2ENZ A;  3OVO A;  3UEJ A;  1Y1C A;  3UFF A;  1N13 A;  1OMU A;  4FKD A;  5DAE A;  1X74 A;  1DS3 I;  1SGP I;  1TBQ R;  2WVJ A;  2ODD A;  5FUX A;  1CT4 I;  1KBE A;  1CSO I;  2QQD A;  1BMO A;  3D00 A;  4E1P A;  1CGI I;  2VRW B;  1SGD I;  1VDD A;  2XRC A;  1FAR A;  2B8T A;  1R79 A;  2A20 A;  1HPT A;  2JYY A;  3SGQ I;  2GVI A;  2QQE A;  2V1C A;  2NU2 I;  4OVO A;  1SGY I;  4GI3 C;  1OVO A;  5HQ8 A;  2P6A C;  1V1H A;  2QQC A;  2W0T A;  3SGB I;  2OD1 A;  2SGD I;  1W4R A;  1SGQ I;  1H0Z A;  2SGE I;  2N71 A;  2JZM A;  3UGI A;  4B6D A;  1CGJ I;  1Z7K B;  2KMP A;  1CT2 I;  2SGF I;  2E5R A;  3OXL A;  2KMR A;  1TBO A;  1SGR I;  1X4S A;  2J87 A;  5HI7 A;  2K9H A;  2ROW A;  1YTP A;  3B4V C;  1OMT A;  2N1A B;  3TJQ A;  1HJA I;  2ORW A;  2OVO A;  2QQ0 A;  1TUS A;  1TIH A;  1XX6 A;  2ARP F;  2JXD A;  1CHO I;  1RFH A;  1UVF A;  1IW4 A;  1UUC A;  2N52 A;  1DS2 I;  1XA6 A;  1YU6 C;  2KCX A;  1TBR R;  1M8B A;  3VDP A;  1PPF I;  2ENN A;  4JCV E;  3RU0 A;  1IY6 A;  3OXG A;  1NUB A;  5EX3 A;  3GOX A;  3QTL D;  2V53 A;  2NU0 I;  2L7X A;  1LR7 A;  2YQP A;  1KMA A;  2UZ3 A;  1PTR A;  1PTQ A;  2KMQ A;  1SGN I;  4E1R A;  5FUV A;  3MEK A;  1BUS A;  2ORV A;  2LEO A;  1AN1 I;  1UVG A;  1FAQ A;  2N17 A;  5CCM A;  1TBN A;  2ELI A;  2M5X A;  5FUY A;  3OXF A;  1CT0 I;  5JHW C;  4UXI A;  2KMO A;  3CXL A;  2QPO A;  2SGP I;  1MT1 A;  3PDN A;  3FC3 A;  1LR8 A;  3BJI A;  2GKR I;  3KY9 A;  1HDL A;  2B0U C;  5FUW A;  1V1I A;  2CJS C;  2F3C I;  1TGS I;  1W3S A;  2SGQ I;  4SGB I;  2YUU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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